BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12120.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471361 jgi|Araly1|471361|fgenesh2_kg.1__1315__AT1G12120.1 2196 0.0
> Ahg471361 jgi|Araly1|471361|fgenesh2_kg.1__1315__AT1G12120.1
Length=1942
Score = 2196 bits (1189), Expect = 0.0
Identities = 1376/1468 (94%), Gaps = 6/1468 (0%)
Strand=Plus/Plus
Query 479 CTCACCTAAGCTTCTGAAGAAAGATATCGATCTTAGGCTTCCTGCAGATCACTACGCTTA 538
|||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 478 CTCACCTAAGCTGCTGGCGAAAGATATCGATCTTCGGCTTCCTGCAGATCACTACGCTTA 537
Query 539 TACTAACTTTCATGAGACACTTGGTTCTGAGAAATTTTACAGCAATGGTAGTTCCCGAGA 598
||||||||||||||||||||||||||||| |||||||||| ||| |||| ||| ||||||
Sbjct 538 TACTAACTTTCATGAGACACTTGGTTCTGGGAAATTTTACGGCACTGGTGGTTACCGAGA 597
Query 599 TACCGTAGAGATGAGATTTCATCCGGGGCACGAAGCTAATAATGTGAAGGAAGTATCAGC 658
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 598 TACCGTAGAGATGAGATTTCATTCGGGGCACGATGCTAATAATGTGAAGGAAGCATCAGC 657
Query 659 CACAAGTTGGACTGGCAAGAGAAATCCAAGAATTGTTATTGATCTTGAAGAACCTCCTCC 718
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CACAAATTGGAGTGGCAAGAGAAATCCAAGAATTGTTATTGATCTTGAAGAACCTCCTCC 717
Query 719 CACAT-GGGTCTCCCATAGAGAGACTACAGAGCATGCT-CAGGCTTCTGTTAGCTATGTT 776
||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 718 CAC-TGGGGTCTCCCATAGAGAGACTACAGAGCATGCTGC-GGCTTCTGTTAGCTATGTT 775
Query 777 ACTGTGAGAAATCCTGACACAAAACCGTCGTTCTTTGATCGGATCAGCTCAAACATTCTG 836
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 ACTGTGAGAAATCCTGAAACAAAACCGTCATTCTTTGATCGGATCAGCTCAAACATTCTG 835
Query 837 ATGGAT-GTAGACCAATCACTCGTTGAGGATGATAGTGATAAGACAACTAGTAAGGAGTC 895
| || | || || ||||| ||||||||| ||||||||||||| || ||||| |||||| |
Sbjct 836 AAGG-TGGTGGATCAATCTCTCGTTGAGTATGATAGTGATAAAACGACTAGCAAGGAGCC 894
Query 896 AAGTTTACTGGATCTTAATAGCACACCGGTTGATGAGTCTGTTTCCGAGCCTCGTTACTC 955
||||||||||||||||||||| || ||||||||||||||||||||||| |||| ||| |
Sbjct 895 AAGTTTACTGGATCTTAATAGTACCCCGGTTGATGAGTCTGTTTCCGAACCTCATTATTG 954
Query 956 TCTCTTACAAGATCTGAACTGTGCATACATCGAGGAGGAGACAGAAACGAGCTACGAGAA 1015
| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 955 TTTTTTACAAGATCTGAACTGTCCATACATCGAGGAGGAGACAGAAACGAGCTGTGAGAA 1014
Query 1016 GAGTGGAATAGATGATGGTTCTACACCGCTTTGCTCTCCTCAATGCCAAAATGTCCATGA 1075
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1015 GAGTGGAATAGATGATGGTCCTACACCGCTTTGCTCTCCTCAATGCCAAAATGTTCATGA 1074
Query 1076 AAAAGACGGCACAGCATCTCCAGCTTCGGATACTTCTTGCTGCACCACTGAAAACAACTC 1135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1075 AAAAGACGGCACAGCATCTCCAGCTTCGTATACTTCTTGCTGCACCACTGAAAACAACTC 1134
Query 1136 GAGGATTGAGTCAAGAAGAAGTTCTTCTCCTCGAGCACTGCAGCCTTCTTGCCGTACCCG 1195
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1135 GAGGACAGAGTCAAGAAGAAGTTCTTCTCCTCGAGCACTGGAGCCTTCTTGCCGTACCCG 1194
Query 1196 GCTTGAGTTTACCAACACAGAAGACTTACTGGAGGAGAATGGATGTTGTAACGAGGAGGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GCTTGAGTTTACCAACACAGAAGACTTACTGGAGGAGAATGGATGTTGTAACGAGGAGGA 1254
Query 1256 TGATTCGTCTGAAGTGATTCAAATGGCAGCTGAGTCATTAGTCCACATATCGGAGATATC 1315
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1255 AGATTCGTCTGAAGTGATTCAAATGGCAGCTGAATCATTAGTCCACATATCGGAGATTTC 1314
Query 1316 GTATCAAAACCAAGACTTGCAATCAAAGCTTGTGTTAAGAACCAACAGCTCATCTGAAGA 1375
|||||||| ||||||||||||||||||||||||| || || ||||||||||||| ||||
Sbjct 1315 ATATCAAAATCAAGACTTGCAATCAAAGCTTGTGTCAAAAATCAACAGCTCATCTCAAGA 1374
Query 1376 TCAAGATTTTCCAGATAAACCGGAGATGGGTAAAGCGAAACCGGGATGTTCCTACGATTC 1435
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1375 TCAAGACTTTCCAGATAAACCCGAGATGGGTAAAGCGGAACCGGGATGTTCCTGCGATTC 1434
Query 1436 ATATGAGCGACACACGTTAGGAATAAGCGAAACCAACACTGAAGAAGACTTCTGTGTGTC 1495
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1435 ATATGAGCGACACACATTAGGAATAAGAGAAACTAACACTGAAGAAGACTTTTGTGTGTC 1494
Query 1496 ATCAATGGCTCTAGATGAACTTAATAACATCACAAGAGATAATAACAAAGAGATTGGACT 1555
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1495 ATCAATGGCTCGAGATGAGCTGAATAACATCACAAGAGATAACAACAAAGAGATTGGACT 1554
Query 1556 CAAGCTGAGAAGAGGGAGAAGAATGAAGAACTTCCAAAAAGAGATACTCCCGAGCTTAAC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAGCTGAGAAGAGGGAGAAGAATGAAGAACTTCCAAAAAGAGATACTCCCGAGCTTAAC 1614
Query 1616 GTCGCTTTCTAGACATGAGATCCGGGAAGACATGAACATCTTGGAAGCAGTTTTGAGATC 1675
|||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1615 GTCGCTCTCTAGACACGAGATCCGAGAAGACATTAACATCTTGGAAGCAGTTTTGAGATC 1674
Query 1676 AAGAGAGTACAAGAAGATGCAGGGAAAGACGAAAGATGTCAAATTCAAAGCAAACCCAAG 1735
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1675 AAGAGAGTACAAGAAGTTGCAGGGAAAGACGAAAGATGTCAAATTCAGAGCAAACCCAAG 1734
Query 1736 AAACAAACGTTCACCACCACAAAGATGCGTTGGTAAAAGAAGGCGAAAAACCGAATGATA 1795
||||||||||||| | || || || |||||||||||||||| ||||||| |||| |||||
Sbjct 1735 AAACAAACGTTCAGCGCCGCAGAGGTGCGTTGGTAAAAGAAAGCGAAAATCCGAGTGATA 1794
Query 1796 TCGATACCTTGCCGGTTTCTGATTCTTTCATACATTTGCTTCATCATGTAATCTTGTAAC 1855
|||||||||| |||| ||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1795 TCGATACCTTCCCGGATTCAGATTCTTTCATACAATTGCTTCATCATGTAATCTTATAAC 1854
Query 1856 AGTCTTTGTTTTCGATTTATTTGTTTTAACTTATGACATTGATTATGATAAGAGGAAAGG 1915
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1855 AGTCTTTGTTTTCGATTTATTTGTTTTAACCTATGACATTGATTATGATAAGAGGAAAGG 1914
Query 1916 CTAGTGAGACGATTATAATCATTTTCTC 1943
||||||||||||| | | ||||||||||
Sbjct 1915 CTAGTGAGACGATGACATTCATTTTCTC 1942
Score = 592 bits (320), Expect = 4e-168
Identities = 422/466 (91%), Gaps = 28/466 (6%)
Strand=Plus/Plus
Query 25 tttctgagatttgagagagtctcctctctct-tctctctctATATCGCTCCTCATGATCC 83
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 1 TTTCTGAGATTTGAGAGAGTCTCCTCTCTCTCTCTCTCGCTCTATCGCTCCTCATGATCC 60
Query 84 GATTTTTTATATAATTTATAAAAAATTTATGTGATAATTACAGATACACGTTATTTGTGT 143
|| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GA--TTTT-TAT-ATTTATAAAAAATTTATGTGATAATTACAGATACACGTTATTTGTGT 116
Query 144 GTATATTGATAGAGACAATAACCATTGGAATCTGACCATGGATCTCTTTTCTTCTTGAGA 203
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTATATTGATGGAGACAATAACCATTGGAATCTGACCATGGATCTCTTTTCTTCTTGAGA 176
Query 204 TATTTTTCATTTCTTTCTCCTGTTCTCGTCTCCC--AGATCTGTTCGTCAATCTTACCAT 261
||||||| ||| | |||||||||||||||||| |||||||||| | || | ||
Sbjct 177 TATTTTT--TTT-T--CTCCTGTTCTCGTCTCCCCCAGATCTGTTC--C--TC---C-AT 223
Query 262 TGGAAAGCTTCAAGCTTCCtttttttCTCTATCTG--GGGACGGGACCGTTGTATAAAAG 319
||||||||||||||||| |||| |||||| ||| ||||||||||| |||||||||||
Sbjct 224 TGGAAAGCTTCAAGCTT--TTTTATTCTCTCTCTATAGGGACGGGACCATTGTATAAAAG 281
Query 320 AGTTAG--A--CCAGACGACGGCACAATGTATTTCTTCGGTTTGTCCAAAGAAGAAGTGT 375
|||||| | ||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 282 AGTTAGTTAGACCAGACGGCCGCACGATGTATTTCTTCGGTTTGTCCAAAGAAGAAGTGT 341
Query 376 TGTCACAGAAACATGTTGTATCATATAAAGAGACTTCTAAGCAGAACCCAATCAATATGG 435
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 342 TGTCACAGAAACATGTTGTATCATATAAAGAGACGTCTAAGCAGAATCCATTCAATATGG 401
Query 436 TCACTCTGTTTGGCAGACAGGTGTATCAGGTAAAAAGTGAGAGCTC 481
||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 402 TCACTCTGTTTGGGAGACAGGTGTATCAGGTGAAAAGCGAGAGCTC 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5