BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12130.1 Length=1413 Score E Sequences producing significant alignments: (Bits) Value Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 1978 0.0 Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 1040 0.0 > Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 Length=1413 Score = 1978 bits (1071), Expect = 0.0 Identities = 1309/1423 (92%), Gaps = 20/1423 (1%) Strand=Plus/Plus Query 1 ATGACACCACCGCCTAATTCAATCAGCTCACGTAACGTGGCCGTGATCGGAGCCGGAGCC 60 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACACCACCGCCTAACTCAATCAGCTCACGTAACGTGGCCGTGATCGGAGCCGGAGCT 60 Query 61 GCCGGGCTTGTTGCGGCTCGAGAGCTTCGTCGTGAAGGTCACACCGTCACCATCTTTGAG 120 ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 61 GCCGGGCTTGTGGCGGCTCGAGAGCTTCGTCGTGAAGGGCACACCGTCACCGCCTTTGAG 120 Query 121 CGTCAGAAACAAGTAGGAGGACTTTGGGTTTGCACTCCAAACGTTGAGCCAGACTTACT- 179 ||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||| Sbjct 121 CGTCAGAAACAAGTAGGAGGACTTTGGGTTTACACTCCAAATGTCGAGCCAGACTCACTG 180 Query 180 AAGCATCGACCCTGATCGAACCGTCGTCCACTCGAGCGTCTACCAATCCCTCCGCACCAA 239 || ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 181 AA-CATCGACCCGGATCGAACCATCGTCCACTCGAGCATCTACCAATCCCTCCGCACCAA 239 Query 240 TCTTCCACGAGAGTGTATGGGTTACAGTGACTTCCCGTTCGTGACCCGTCCCGATGATGA 299 || ||||||||||||||||||||||||||||||||||| ||||||| ||||| || || Sbjct 240 CCTCCCACGAGAGTGTATGGGTTACAGTGACTTCCCGTTTGTGACCCAACCCGACGACGA 299 Query 300 GTCCAGGGACCCGAGACGGTACCCGGATCACAGAGAAGTCATGAGGTATCTTCAAGACTT 359 | |||||||||||||||||||||||||||| || ||||||||||||||||| || ||||| Sbjct 300 GACCAGGGACCCGAGACGGTACCCGGATCAGAGGGAAGTCATGAGGTATCTGCAGGACTT 359 Query 360 CGCCAAAGAGTTCAAGATCGAA-GAGATGATCCGATTCGAGACGGAGGTTTTTCGTGTGG 418 |||||||||||| | || || |||||||||||||||||||| |||||||| ||||||| Sbjct 360 CGCCAAAGAGTTTGATAT-TAACGAGATGATCCGATTCGAGACAGAGGTTTTGCGTGTGG 418 Query 419 AGCCGACGGCGGAGAATAGTTGTAAATGGAGAGTTCAATTTAGGAGCTCAAGTGGTGTCT 478 ||||| |||||||||| ||| || ||||||||||||||||||||||||||| |||||||| Sbjct 419 AGCCGGCGGCGGAGAACAGTCGTGAATGGAGAGTTCAATTTAGGAGCTCAAATGGTGTCT 478 Query 479 CCGGCGAAGATATATTCGACGCAGTCGTCA-TTTGCAATGGTCACTTCACTGAGCCTCGT 537 ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||| Sbjct 479 CCGGCGAAGATATCTTCGATGCAGTCGT-AGTTTGCAATGGTCACTTCACTGAGCCTCGT 537 Query 538 CTTGCTCATATTCCTGGAATAGAGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTAT 597 ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 538 CTTGCCCATATTCCTGTTCTCTTGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTAT 597 Query 598 CGTGTTTCAGATCCATTCAAAGGTCAAGTGGTGATAGTGATAGGATATCAATCCAGTGGA 657 |||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||| Sbjct 598 CGTGTTCCAGATCCATTCAAAGATCAAGTGGTGATAGTGATAGGAAACCAATCCAGTGGA 657 Query 658 AGTGATATTAGTAGGGACATAGCAATCC-TAGCAAAAGAAGTCCATATTGCAGCTAAATC 716 ||||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct 658 AGTGATATTAGCAGGGACATAGCAA-CCTTGGCAAAAGAAGTCCATATTGCAGCTAAATC 716 Query 717 TGATGCATACGCAAAGGAAAGTTCGATTTATAGCAATCTACATTTTCATCCGACGATTGA 776 ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 717 TGATGCATACGAAAAGGAAAGTTCCATTTATAGCAATCTACATATTCATCCGACGATTGA 776 Query 777 CCGAGTGTATGAGGATGGTTCGGTTGTTTTCCAAGACGGGAAACTGATATTTGCGGATGC 836 ||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 777 CCGCGTGTATGCGGATGGTTCGGTTGTTTTCCAAGACGGGAAAGTGGTATTTGCGGATGC 836 Query 837 CATAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACAAAGGGTTATGT 896 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 837 CATAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACTAATGGTTATGT 896 Query 897 GAACGTCGAAGATAACCGTGTTGGACCATTATACAAGCATGTGTTTCCACCGGCGCTTGC 956 || ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 897 GACCGTTGAAGATAACCGTGTTGGACCATTATACAAGCATGTCTTTCCGCCAGCGCTTGC 956 Query 957 TCCTGGCCTCTCCTTTATCGGTTTACCTTCCATGGCATTGCAATTCTTTATGTTTGAAAT 1016 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 957 CCCTGGCCTCTCCTTTATCGGTTTACCTTCAATGGCGTTGCAATTCTTTATGTTTGAAAT 1016 Query 1017 CCAAAGCAGGTGGGTCGCTTCAGTTTTATCGGGTCGGGTTAAACTTCCCTCGGAGGAGCA 1076 |||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||| || Sbjct 1017 CCAAAGCAAATGGGTCGCTTCGGTTTTATCGGGTCGTGTTAAGCTTCCGTCGGAGGA-CA 1075 Query 1077 AA-TGATGGAAGATGTTATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGA 1135 || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 AAATGATGGAAGATATCATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGA 1135 Query 1136 GATTTACTCATTTTCTAACTGATCCGCAATGGACTCCAATGTTCGAAAAGCTTAAGCCAC 1195 ||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct 1136 GATTTACGCATTTTCTAACTAATCCTCAATGGACTCCGATGTTCGAAAAGCTTAAGCCAC 1195 Query 1196 ATGAAGCAGTTTTGATCTCACAAAGTGAGTATTTCAACTGGATTGCGGAACAATGTGGTT 1255 ||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| Sbjct 1196 ATGAAGCAGTTTTGATCTCGCAAACTGAGTATTTCAACTGGATTGCGGAACAGTGTGGTA 1255 Query 1256 GCTCGTCCATCGAACGTTGGAGAGAGGAACAGTATAACATAGCCATCAAAAAAGATGATG 1315 || |||||||||||||||||||||||||||| || || |||||||| ||||||||||||| Sbjct 1256 GCCCGTCCATCGAACGTTGGAGAGAGGAACAATACAATATAGCCATAAAAAAAGATGATG 1315 Query 1316 ACAA-TTTTCGTGATGAATGGGATGATGATGATCAAATTATAC-AAGAAGCGTACCGAGA 1373 | || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| || Sbjct 1316 A-AACTTTTCGTGACGAATGGGATGATGATGATC---TTAT-CGAAGAAGCCTACCGGGA 1370 Query 1374 TTTTGCTAAATTCAAACCGAGCAAAGTTTG--G-TCTACATAA 1413 |||||||||| ||||||||| ||||||||| | ||||||||| Sbjct 1371 TTTTGCTAAAATCAAACCGACCAAAGTTTGTTGCTCTACATAA 1413 > Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 Length=1482 Score = 1040 bits (563), Expect = 0.0 Identities = 1068/1305 (82%), Gaps = 62/1305 (5%) Strand=Plus/Plus Query 31 CGTAACGTGGCCGTGATCGGAGC-CGGAGCCGCCGGGCTTGTTGCGGCTCGAGAGCTTCG 89 ||| ||||||||||||||||| | ||||||||||||||| || |||| |||||||||||| Sbjct 30 CGTCACGTGGCCGTGATCGGA-CTCGGAGCCGCCGGGCTCGTGGCGGTTCGAGAGCTTCG 88 Query 90 TCGTGAAGGTCACACCGTCA-CCATCTTTGAGCGTCAGAAACAAGTAGGAGGACTTTGGG 148 |||||||||||||||||||| | | || |||||| ||||||| || || ||||| |||| Sbjct 89 TCGTGAAGGTCACACCGTCATCGGT-TTCGAGCGTGAGAAACATGTTGGTGGACTCTGGG 147 Query 149 TTTGCACTCCAAAC--GTTGAGCCAGACTTACTAAGCATCGACCCTGATCGAACCGTCGT 206 ||| |||| | | || || ||||||| ||| ||| | ||||| ||||||||| |||| Sbjct 148 TTTACACT--GATCGAGTCGAACCAGACTCACTTAGCGTTGACCCGGATCGAACCATCGT 205 Query 207 CCACTCGAGCGTCTACCAATCCCTCCGCACCAATCTTCCACGAGAGTGTATGGGTTACAG 266 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 206 ACACTCGAGCGTCTACCAATCCCTCCGCACAAATCTACCACGAGAGTGTATGGGTTACAG 265 Query 267 TGAC-TTCCCGTTCGTGACCCG-TCCCGATGATGAGTCCAGG-GACCCGAGACGGTACCC 323 |||| ||||| ||||| ||||| | ||| | |||| || ||||||||||||||||| Sbjct 266 TGACTTTCCC-TTCGTAACCCGAT-CCG--G-TGAG----GGCGACCCGAGACGGTACCC 316 Query 324 GGATCACAGAGAAGTCATGAGGTATCTTCAAGACTTCGCCAAAGAGTTCAAGATCGAAGA 383 |||||| || |||||| ||| ||| |||||||| |||||||||||||||||||||||||| Sbjct 317 GGATCATAGGGAAGTCTTGATGTACCTTCAAGATTTCGCCAAAGAGTTCAAGATCGAAGA 376 Query 384 GATGATCCGATTCGAGACGGAGGTTTT-TCGTGTGGAGCCGACGGCGGAGAATAGTTGTA 442 |||||||||||||| || |||||||| | |||||||||||||| ||||||||| ||| Sbjct 377 AATGATCCGATTCGATACAGAGGTTTTGT-GTGTGGAGCCGACGCCGGAGAATAACCGTA 435 Query 443 AATGGAGAGTTCAATTTAGGAGCTCAAGTGGTGTCTCCGGCGAAGATATATTCGACGCAG 502 | ||||| |||||||||| |||||||||||||||||||||||||| || || ||||| | Sbjct 436 ATTGGAGTGTTCAATTTAAAAGCTCAAGTGGTGTCTCCGGCGAAGAAATCTTTGACGCTG 495 Query 503 TCGTCA-TTTGCAATGGTCACTTCACTGAGCCTCGTCTTGCTCATATTCCTGGAATAGAG 561 |||| | |||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 496 TCGT-AGTTTGTAATGGTCACTTCACTGAGCCTCGTCTTGCTCACATTCCTGGGATAGAG 554 Query 562 TCATGGCCAGGAAAGCAAATCCATAGCCACAATTATCGTGTTTC-AGATCCATTCAAAGG 620 ||||||||||||||||| |||||||||||||||||||| | ||| |||| |||||||| Sbjct 555 TCATGGCCAGGAAAGCAGATCCATAGCCACAATTATCG-GATTCCAGATTTATTCAAAGA 613 Query 621 TCAAGTGGTGATAGTGATAGGATA-TCAATCCAGTGGAAGTGATATTAGTAGGGACATAG 679 ||| ||||||||||| |||||| | |||| ||||||||| || ||||||| ||||||| Sbjct 614 TCAGGTGGTGATAGTTATAGGA-AGTCAAGCCAGTGGAAACGACATTAGTAAAGACATAG 672 Query 680 CAATCC-TAGCAAAAGAAGTCCATAT-TGCAG-CTAAATCTGATGCATACGCAAAGGAAA 736 ||| || | ||||||||||| ||||| | | | ||||| | | ||||| || | | | Sbjct 673 CAA-CCATTGCAAAAGAAGTTCATATCT-C-GTCTAAAGCGGTTGCATCCG-ATTC-ATA 727 Query 737 -GT-TCGATTTAT-AGCAATCTACATTTTCATCCGACGAT-TGACCGAGTGTATGAGGAT 792 | | | || | | ||| |||| |||| || ||||| | |||| | |||||| Sbjct 728 CGGCT-G-TT-ACGA-CAACCTACGGATTCACCCTACGATAT-ACCGCGCCCGCGAGGAT 782 Query 793 GGTTCGGTTGTTTTCC-AAGACGGGAAACTGATATTTGCGGATGCCATAGTACATTGCAC 851 ||||| || || |||| || |||||||| || | ||||| ||||| ||||| |||||||| Sbjct 783 GGTTCCGTGGTATTCCGAA-ACGGGAAAGTGGTTTTTGCTGATGCTATAGTTCATTGCAC 841 Query 852 CGGCTACAAGTATTGCTTCCCATTTCTTGAAA-CAAAGGGTTATGTGAAC-GTCGAAGAT 909 ||| ||||||||| ||||| |||||| ||| ||| || ||| || | | || |||||| Sbjct 842 CGGTTACAAGTATCATTTCCCGTTTCTTAAAAACAACGG-TTACGTTA-CTGTAGAAGAT 899 Query 910 AACCGTGTTGGACCATTATACAAGCATGTGTTTCC-ACCGGCGCTTGCTCCTGGCCTCTC 968 |||||||||||||| | ||||||||||| ||||| ||| || |||| ||||| |||| Sbjct 900 AACCGTGTTGGACCGCTCTACAAGCATGT-TTTCCCACCCGCATTTGCGCCTGGGATCTC 958 Query 969 CTTTATCGGTTTACCTTCCATGG--CATTGCAATTCTTTATGTTTGAAATCCAAAGCAGG 1026 |||||| |||||||||| ||||| | || || ||||||||||||||||| || |||| | Sbjct 959 CTTTATTGGTTTACCTTTCATGGGGC-TT-CAGTTCTTTATGTTTGAAATACAGAGCAAG 1016 Query 1027 TGGGTCGCTTCAGTTTTATCGGGTCGGGTTAAACTTCCCTCGGAGGAGCAA-ATGATGGA 1085 ||||| ||||| ||||| |||||||||||||| |||||| | ||||| || |||||||| Sbjct 1017 TGGGTTGCTTCGGTTTTGTCGGGTCGGGTTAAGCTTCCCACAGAGGAT-AAGATGATGGA 1075 Query 1086 AGATGTTATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGAGATTTACTCA 1145 ||| | |||||||||||| | |||||| || |||||| ||||| ||||||| ||| || Sbjct 1076 AGAGGCTATAGCTTTCTACACGAAGCTTGAAGATTTGGGGATTCCTAAGAGATATACACA 1135 Query 1146 TTTTCTAACTGATCCGCAATGGACTCCAATGTTCGAAAAGCTTAAGCCACATGAAGCAGT 1205 ||||||||| ||||| | | ||| ||||||| ||| | | |||| || | || ||||| Sbjct 1136 TTTTCTAACCGATCCTCGAGGGAATCCAATGCTCGGGACGTTTAAACCGGAGGATGCAGT 1195 Query 1206 TTTGATCTCACAAAGTGAGTATTTCAACTGGATTGCGGAACAATGTGGTTGCTCGTCCAT 1265 | ||||||| ||||| || || ||||||||||| || |||| ||| ||||| ||| ||| Sbjct 1196 TGTGATCTCTCAAAGCGATTACTTCAACTGGATCGCAAAACAGTGTCGTTGCACGTACAT 1255 Query 1266 CGAACGTTGGAGAGAG-GAACAGTATAACATAGCCATCAA-AAAA 1308 ||||||||||||||| || | || || | |||||||| |||| Sbjct 1256 AGAACGTTGGAGAGAGCGAGTA-TACAATGTTGCCATCAAGAAAA 1299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52831169815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5