BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12130.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 1978 0.0
Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 1040 0.0
> Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231
Length=1413
Score = 1978 bits (1071), Expect = 0.0
Identities = 1309/1423 (92%), Gaps = 20/1423 (1%)
Strand=Plus/Plus
Query 1 ATGACACCACCGCCTAATTCAATCAGCTCACGTAACGTGGCCGTGATCGGAGCCGGAGCC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACACCACCGCCTAACTCAATCAGCTCACGTAACGTGGCCGTGATCGGAGCCGGAGCT 60
Query 61 GCCGGGCTTGTTGCGGCTCGAGAGCTTCGTCGTGAAGGTCACACCGTCACCATCTTTGAG 120
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 61 GCCGGGCTTGTGGCGGCTCGAGAGCTTCGTCGTGAAGGGCACACCGTCACCGCCTTTGAG 120
Query 121 CGTCAGAAACAAGTAGGAGGACTTTGGGTTTGCACTCCAAACGTTGAGCCAGACTTACT- 179
||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 121 CGTCAGAAACAAGTAGGAGGACTTTGGGTTTACACTCCAAATGTCGAGCCAGACTCACTG 180
Query 180 AAGCATCGACCCTGATCGAACCGTCGTCCACTCGAGCGTCTACCAATCCCTCCGCACCAA 239
|| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 181 AA-CATCGACCCGGATCGAACCATCGTCCACTCGAGCATCTACCAATCCCTCCGCACCAA 239
Query 240 TCTTCCACGAGAGTGTATGGGTTACAGTGACTTCCCGTTCGTGACCCGTCCCGATGATGA 299
|| ||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 240 CCTCCCACGAGAGTGTATGGGTTACAGTGACTTCCCGTTTGTGACCCAACCCGACGACGA 299
Query 300 GTCCAGGGACCCGAGACGGTACCCGGATCACAGAGAAGTCATGAGGTATCTTCAAGACTT 359
| |||||||||||||||||||||||||||| || ||||||||||||||||| || |||||
Sbjct 300 GACCAGGGACCCGAGACGGTACCCGGATCAGAGGGAAGTCATGAGGTATCTGCAGGACTT 359
Query 360 CGCCAAAGAGTTCAAGATCGAA-GAGATGATCCGATTCGAGACGGAGGTTTTTCGTGTGG 418
|||||||||||| | || || |||||||||||||||||||| |||||||| |||||||
Sbjct 360 CGCCAAAGAGTTTGATAT-TAACGAGATGATCCGATTCGAGACAGAGGTTTTGCGTGTGG 418
Query 419 AGCCGACGGCGGAGAATAGTTGTAAATGGAGAGTTCAATTTAGGAGCTCAAGTGGTGTCT 478
||||| |||||||||| ||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 419 AGCCGGCGGCGGAGAACAGTCGTGAATGGAGAGTTCAATTTAGGAGCTCAAATGGTGTCT 478
Query 479 CCGGCGAAGATATATTCGACGCAGTCGTCA-TTTGCAATGGTCACTTCACTGAGCCTCGT 537
||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 479 CCGGCGAAGATATCTTCGATGCAGTCGT-AGTTTGCAATGGTCACTTCACTGAGCCTCGT 537
Query 538 CTTGCTCATATTCCTGGAATAGAGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTAT 597
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTGCCCATATTCCTGTTCTCTTGTCATGGCCAGGAAAGCAAATCCATAGCCACAATTAT 597
Query 598 CGTGTTTCAGATCCATTCAAAGGTCAAGTGGTGATAGTGATAGGATATCAATCCAGTGGA 657
|||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 598 CGTGTTCCAGATCCATTCAAAGATCAAGTGGTGATAGTGATAGGAAACCAATCCAGTGGA 657
Query 658 AGTGATATTAGTAGGGACATAGCAATCC-TAGCAAAAGAAGTCCATATTGCAGCTAAATC 716
||||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 658 AGTGATATTAGCAGGGACATAGCAA-CCTTGGCAAAAGAAGTCCATATTGCAGCTAAATC 716
Query 717 TGATGCATACGCAAAGGAAAGTTCGATTTATAGCAATCTACATTTTCATCCGACGATTGA 776
||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 717 TGATGCATACGAAAAGGAAAGTTCCATTTATAGCAATCTACATATTCATCCGACGATTGA 776
Query 777 CCGAGTGTATGAGGATGGTTCGGTTGTTTTCCAAGACGGGAAACTGATATTTGCGGATGC 836
||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 777 CCGCGTGTATGCGGATGGTTCGGTTGTTTTCCAAGACGGGAAAGTGGTATTTGCGGATGC 836
Query 837 CATAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACAAAGGGTTATGT 896
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 837 CATAGTACATTGCACCGGCTACAAGTATTGCTTCCCATTTCTTGAAACTAATGGTTATGT 896
Query 897 GAACGTCGAAGATAACCGTGTTGGACCATTATACAAGCATGTGTTTCCACCGGCGCTTGC 956
|| ||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 897 GACCGTTGAAGATAACCGTGTTGGACCATTATACAAGCATGTCTTTCCGCCAGCGCTTGC 956
Query 957 TCCTGGCCTCTCCTTTATCGGTTTACCTTCCATGGCATTGCAATTCTTTATGTTTGAAAT 1016
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 957 CCCTGGCCTCTCCTTTATCGGTTTACCTTCAATGGCGTTGCAATTCTTTATGTTTGAAAT 1016
Query 1017 CCAAAGCAGGTGGGTCGCTTCAGTTTTATCGGGTCGGGTTAAACTTCCCTCGGAGGAGCA 1076
|||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||||| ||
Sbjct 1017 CCAAAGCAAATGGGTCGCTTCGGTTTTATCGGGTCGTGTTAAGCTTCCGTCGGAGGA-CA 1075
Query 1077 AA-TGATGGAAGATGTTATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGA 1135
|| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AAATGATGGAAGATATCATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGA 1135
Query 1136 GATTTACTCATTTTCTAACTGATCCGCAATGGACTCCAATGTTCGAAAAGCTTAAGCCAC 1195
||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 1136 GATTTACGCATTTTCTAACTAATCCTCAATGGACTCCGATGTTCGAAAAGCTTAAGCCAC 1195
Query 1196 ATGAAGCAGTTTTGATCTCACAAAGTGAGTATTTCAACTGGATTGCGGAACAATGTGGTT 1255
||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 1196 ATGAAGCAGTTTTGATCTCGCAAACTGAGTATTTCAACTGGATTGCGGAACAGTGTGGTA 1255
Query 1256 GCTCGTCCATCGAACGTTGGAGAGAGGAACAGTATAACATAGCCATCAAAAAAGATGATG 1315
|| |||||||||||||||||||||||||||| || || |||||||| |||||||||||||
Sbjct 1256 GCCCGTCCATCGAACGTTGGAGAGAGGAACAATACAATATAGCCATAAAAAAAGATGATG 1315
Query 1316 ACAA-TTTTCGTGATGAATGGGATGATGATGATCAAATTATAC-AAGAAGCGTACCGAGA 1373
| || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| ||
Sbjct 1316 A-AACTTTTCGTGACGAATGGGATGATGATGATC---TTAT-CGAAGAAGCCTACCGGGA 1370
Query 1374 TTTTGCTAAATTCAAACCGAGCAAAGTTTG--G-TCTACATAA 1413
|||||||||| ||||||||| ||||||||| | |||||||||
Sbjct 1371 TTTTGCTAAAATCAAACCGACCAAAGTTTGTTGCTCTACATAA 1413
> Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1
Length=1482
Score = 1040 bits (563), Expect = 0.0
Identities = 1068/1305 (82%), Gaps = 62/1305 (5%)
Strand=Plus/Plus
Query 31 CGTAACGTGGCCGTGATCGGAGC-CGGAGCCGCCGGGCTTGTTGCGGCTCGAGAGCTTCG 89
||| ||||||||||||||||| | ||||||||||||||| || |||| ||||||||||||
Sbjct 30 CGTCACGTGGCCGTGATCGGA-CTCGGAGCCGCCGGGCTCGTGGCGGTTCGAGAGCTTCG 88
Query 90 TCGTGAAGGTCACACCGTCA-CCATCTTTGAGCGTCAGAAACAAGTAGGAGGACTTTGGG 148
|||||||||||||||||||| | | || |||||| ||||||| || || ||||| ||||
Sbjct 89 TCGTGAAGGTCACACCGTCATCGGT-TTCGAGCGTGAGAAACATGTTGGTGGACTCTGGG 147
Query 149 TTTGCACTCCAAAC--GTTGAGCCAGACTTACTAAGCATCGACCCTGATCGAACCGTCGT 206
||| |||| | | || || ||||||| ||| ||| | ||||| ||||||||| ||||
Sbjct 148 TTTACACT--GATCGAGTCGAACCAGACTCACTTAGCGTTGACCCGGATCGAACCATCGT 205
Query 207 CCACTCGAGCGTCTACCAATCCCTCCGCACCAATCTTCCACGAGAGTGTATGGGTTACAG 266
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 206 ACACTCGAGCGTCTACCAATCCCTCCGCACAAATCTACCACGAGAGTGTATGGGTTACAG 265
Query 267 TGAC-TTCCCGTTCGTGACCCG-TCCCGATGATGAGTCCAGG-GACCCGAGACGGTACCC 323
|||| ||||| ||||| ||||| | ||| | |||| || |||||||||||||||||
Sbjct 266 TGACTTTCCC-TTCGTAACCCGAT-CCG--G-TGAG----GGCGACCCGAGACGGTACCC 316
Query 324 GGATCACAGAGAAGTCATGAGGTATCTTCAAGACTTCGCCAAAGAGTTCAAGATCGAAGA 383
|||||| || |||||| ||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 317 GGATCATAGGGAAGTCTTGATGTACCTTCAAGATTTCGCCAAAGAGTTCAAGATCGAAGA 376
Query 384 GATGATCCGATTCGAGACGGAGGTTTT-TCGTGTGGAGCCGACGGCGGAGAATAGTTGTA 442
|||||||||||||| || |||||||| | |||||||||||||| ||||||||| |||
Sbjct 377 AATGATCCGATTCGATACAGAGGTTTTGT-GTGTGGAGCCGACGCCGGAGAATAACCGTA 435
Query 443 AATGGAGAGTTCAATTTAGGAGCTCAAGTGGTGTCTCCGGCGAAGATATATTCGACGCAG 502
| ||||| |||||||||| |||||||||||||||||||||||||| || || ||||| |
Sbjct 436 ATTGGAGTGTTCAATTTAAAAGCTCAAGTGGTGTCTCCGGCGAAGAAATCTTTGACGCTG 495
Query 503 TCGTCA-TTTGCAATGGTCACTTCACTGAGCCTCGTCTTGCTCATATTCCTGGAATAGAG 561
|||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 496 TCGT-AGTTTGTAATGGTCACTTCACTGAGCCTCGTCTTGCTCACATTCCTGGGATAGAG 554
Query 562 TCATGGCCAGGAAAGCAAATCCATAGCCACAATTATCGTGTTTC-AGATCCATTCAAAGG 620
||||||||||||||||| |||||||||||||||||||| | ||| |||| ||||||||
Sbjct 555 TCATGGCCAGGAAAGCAGATCCATAGCCACAATTATCG-GATTCCAGATTTATTCAAAGA 613
Query 621 TCAAGTGGTGATAGTGATAGGATA-TCAATCCAGTGGAAGTGATATTAGTAGGGACATAG 679
||| ||||||||||| |||||| | |||| ||||||||| || ||||||| |||||||
Sbjct 614 TCAGGTGGTGATAGTTATAGGA-AGTCAAGCCAGTGGAAACGACATTAGTAAAGACATAG 672
Query 680 CAATCC-TAGCAAAAGAAGTCCATAT-TGCAG-CTAAATCTGATGCATACGCAAAGGAAA 736
||| || | ||||||||||| ||||| | | | ||||| | | ||||| || | | |
Sbjct 673 CAA-CCATTGCAAAAGAAGTTCATATCT-C-GTCTAAAGCGGTTGCATCCG-ATTC-ATA 727
Query 737 -GT-TCGATTTAT-AGCAATCTACATTTTCATCCGACGAT-TGACCGAGTGTATGAGGAT 792
| | | || | | ||| |||| |||| || ||||| | |||| | ||||||
Sbjct 728 CGGCT-G-TT-ACGA-CAACCTACGGATTCACCCTACGATAT-ACCGCGCCCGCGAGGAT 782
Query 793 GGTTCGGTTGTTTTCC-AAGACGGGAAACTGATATTTGCGGATGCCATAGTACATTGCAC 851
||||| || || |||| || |||||||| || | ||||| ||||| ||||| ||||||||
Sbjct 783 GGTTCCGTGGTATTCCGAA-ACGGGAAAGTGGTTTTTGCTGATGCTATAGTTCATTGCAC 841
Query 852 CGGCTACAAGTATTGCTTCCCATTTCTTGAAA-CAAAGGGTTATGTGAAC-GTCGAAGAT 909
||| ||||||||| ||||| |||||| ||| ||| || ||| || | | || ||||||
Sbjct 842 CGGTTACAAGTATCATTTCCCGTTTCTTAAAAACAACGG-TTACGTTA-CTGTAGAAGAT 899
Query 910 AACCGTGTTGGACCATTATACAAGCATGTGTTTCC-ACCGGCGCTTGCTCCTGGCCTCTC 968
|||||||||||||| | ||||||||||| ||||| ||| || |||| ||||| ||||
Sbjct 900 AACCGTGTTGGACCGCTCTACAAGCATGT-TTTCCCACCCGCATTTGCGCCTGGGATCTC 958
Query 969 CTTTATCGGTTTACCTTCCATGG--CATTGCAATTCTTTATGTTTGAAATCCAAAGCAGG 1026
|||||| |||||||||| ||||| | || || ||||||||||||||||| || |||| |
Sbjct 959 CTTTATTGGTTTACCTTTCATGGGGC-TT-CAGTTCTTTATGTTTGAAATACAGAGCAAG 1016
Query 1027 TGGGTCGCTTCAGTTTTATCGGGTCGGGTTAAACTTCCCTCGGAGGAGCAA-ATGATGGA 1085
||||| ||||| ||||| |||||||||||||| |||||| | ||||| || ||||||||
Sbjct 1017 TGGGTTGCTTCGGTTTTGTCGGGTCGGGTTAAGCTTCCCACAGAGGAT-AAGATGATGGA 1075
Query 1086 AGATGTTATAGCTTTCTATGCAAAGCTTAAATCTTTGGGTATTCCCAAGAGATTTACTCA 1145
||| | |||||||||||| | |||||| || |||||| ||||| ||||||| ||| ||
Sbjct 1076 AGAGGCTATAGCTTTCTACACGAAGCTTGAAGATTTGGGGATTCCTAAGAGATATACACA 1135
Query 1146 TTTTCTAACTGATCCGCAATGGACTCCAATGTTCGAAAAGCTTAAGCCACATGAAGCAGT 1205
||||||||| ||||| | | ||| ||||||| ||| | | |||| || | || |||||
Sbjct 1136 TTTTCTAACCGATCCTCGAGGGAATCCAATGCTCGGGACGTTTAAACCGGAGGATGCAGT 1195
Query 1206 TTTGATCTCACAAAGTGAGTATTTCAACTGGATTGCGGAACAATGTGGTTGCTCGTCCAT 1265
| ||||||| ||||| || || ||||||||||| || |||| ||| ||||| ||| |||
Sbjct 1196 TGTGATCTCTCAAAGCGATTACTTCAACTGGATCGCAAAACAGTGTCGTTGCACGTACAT 1255
Query 1266 CGAACGTTGGAGAGAG-GAACAGTATAACATAGCCATCAA-AAAA 1308
||||||||||||||| || | || || | |||||||| ||||
Sbjct 1256 AGAACGTTGGAGAGAGCGAGTA-TACAATGTTGCCATCAAGAAAA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5