BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12140.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072 2228 0.0
Ahg910979 jgi|Araly1|910979|Al_scaffold_0001_1233 739 0.0
Ahg920054 jgi|Araly1|920054|scaffold_101335.1 364 1e-99
Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1 206 7e-52
Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1 202 9e-51
> Ahg334507 jgi|Araly1|334507|fgenesh1_pg.C_scaffold_1001072
Length=1380
Score = 2228 bits (1206), Expect = 0.0
Identities = 1324/1382 (96%), Gaps = 4/1382 (0%)
Strand=Plus/Plus
Query 18 ATGGCACCAGCACGAACCCGAGTCAACTCACTCAACGTGGCAGTGATCGGAGCCGGAGCC 77
|||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCACCGGCACGAAGACGAGTCAACTCACTCCACGTGGCAGTGATCGGAGCCGGAGCC 60
Query 78 GCCGGACTCGTAGCTGCAAGAGAGCTCCGCCGCGAGAATCACACCGTCGTCGTTTTCGAA 137
|| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||
Sbjct 61 GCAGGACTCGTAGCTGCACGAGAGCTACGCCGCGAGAATCACTCCGTCGTCGTTTTCGAA 120
Query 138 CGTGACTCAAAAGTCGGAGGTCTCTGGGTATACACACCTAACAGCGAACCAGACCCGCTT 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CGTGACTCAAAAGTCGGAGGTCTCTGGGTATACACACCTAACAGCGAACCAGACCCACTT 180
Query 198 AGCCTCGATCCAAACCGAACCATCGTCCATTCAAGCGTCTATGATTCTCTCCGAACCAAT 257
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 181 AGTCTCGATCCAAACCGAACCATCGTCCACTCAAGCGTCTACGATTCTCTTCGAACCAAT 240
Query 258 CTCCCACGAGAGTGCATGGGTTACAGAGACTTCCCCTTCGTGCCTCGACCTGAAGATGAC 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCCACGAGAGTGCATGGGTTACAGAGACTTCCCCTTCGTGCCTCGACCTGAAGATGAC 300
Query 318 GAATCAAGAGACTC-GAGAAGGTACCCTAGTCACAGAGAAGTTCTTGCTTACCTTGAAGA 376
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAATCAAGAGAC-CAGAGAAGGTACCCTAGTCACAGAGAAGTTCTTGCTTACCTTGAAGA 359
Query 377 CTTCGCTAGAGAATTCAAACTTGTGGAGATGGTTCGATTTAAGACCGAAGTAGTTCTTGT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 CTTCGCTAGAGAATTCAAACTTGTGGAGATGGTTCGATTTAAGACCGAAGTAGTTGTTGT 419
Query 437 CGAGCCTGAAGAT-AAGAAATGGAGGGTTCAATCCAAAAATTCAGATGGGATCTCCAAAG 495
|||||||||| | || ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 420 TGAGCCTGAAGGTCAA-AAATGGAAGGTTCAATCCAAAAATTCAGATGGGATCTCTAAAG 478
Query 496 ATGAGATCTTTGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGCTC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGAGATCTTTGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGCTC 538
Query 556 ATGTTCCTGGTATAGATTCATGGCCAGGGAAGCAGATTCATAGCCACAATTACCGTGTTC 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTTCCTGGTATAGATTCATGGCCAGGGAAGCAGATTCATAGCCACAATTACCGTGTTC 598
Query 616 CTGATCAATTCAAAGACCAGGTGGTGGTAGTGATAGGAAATTTTGCGAGTGGAGCTGATA 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTGATCAATTCAAAGACCAGGTGGTGGTAGTGATAGGAAATTTTGCGAGTGGAGCTGATA 658
Query 676 TCAGCAGGGACATAACGGGAGTGGCTAAAGAAGTCCATATCGCGTCTAGATCGAATCCAT 735
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 659 TAAGCAGGGACATAACGGGAGTGGCGAAAGAAGTCCATATTGCGTCTAGATCGAATCCAT 718
Query 736 CTAAGACATACTCAAAACTTCCCGGGTCAAACAATCTATGGCTTCACTCTATGATAGAAA 795
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 719 CTAAGACATACTCAAAACTTCCCGGGTCCAGTAATCTATGGCTTCACTCTATGATAGAAA 778
Query 796 GTGTACACGAAGATGGGACGATTGTTTTTCAGAACGGTAAGGTTGTACAAGCTGATACCA 855
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCGTACACGAAGATGGGTCGATTGTTTTTCAGAACGGTAAGGTTGTACAAGCTGATACCA 838
Query 856 TTGTGCATTGCACTGGTTACAAATATCACTTCCCATTTCTCAACACCAATGGCTATATTA 915
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 839 TTGTGCATTGCACTGGTTACAAATACCACTTCCCATTTCTCAACACAAATGGTTATATTA 898
Query 916 CTGTTGAGGATAACTGTGTTGGACCGCTTTACGAACATGTCTTTCCGCCTGCGCTTGCTC 975
|||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 899 CTGTCGAGGATAACTGTGTTGGACCGCTTTACAAACACGTGTTTCCGCCTGCGCTTGCTC 958
Query 976 CCGGGCTTTCCTTCATCGGTTTACCCTGGATGACACTGCAATTCTTTATGTTTGAGCTCC 1035
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCGGCCTTTCCTTCATCGGTTTACCCTGGATGACACTGCAATTCTTTATGTTTGAGCTCC 1018
Query 1036 AAAGCAAGTGGGTGGCTGCAGCTTTGTCTGGCCGGGTCACACTTCCTTCAGAAGAGAAAA 1095
|||| ||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 1019 AAAGTAAGTGGGTGGCTGCAGCTTTGTCCGGTCGTGTCACACTTCCTTCAGAAGACAAAA 1078
Query 1096 TGATGGAAGACGTTACCGCCTACTATGCAAAGCGTGAGGCTTTCGGGCAACCTAAGAGAT 1155
|||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||
Sbjct 1079 TGATGGAAGACGTTACCGCCTACTATGCAAAGCGTGAGTCCTACGGGCAACCCAAGAGAT 1138
Query 1156 ACACACATCGACTTGGTGGAGGTCAGGTTGATTACCTTAATTGGATAGCAGAGCAAATTG 1215
||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||
Sbjct 1139 ACACACATCGACTTGGTGGCGGTCAGGTTGAATACCTCAACTGGATAGCCGAGCAAATTG 1198
Query 1216 GTGCACCGCCCGGTGAACAATGGAGATATCAGGAAATAAATGGCGGATACTACAGACTTG 1275
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1199 GCGCACCGCCCGGTGAACAATGGAGGTATCAGGAAATAGATGGCGGATACTACAGACTTG 1258
Query 1276 CTACACAATCAGACACTTTCCGTGATAAGTGGGACGATGATCATCTCATAGTTGAGGCTT 1335
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 CTACACAATCAGACACTTTCCGTGATAAATGGGACGATGATCATCTCATAGTTGAGGCTT 1318
Query 1336 ATGAGGATTTCTTGAGACAGAAGCTGATTAGTAGTCTTCCTTCTCAGTTATTGGAATCTT 1395
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 ATGAGGATTTCTTGAGGCAGAAGCTGATTAGTAGTCTTCCTTCTCAGTTATTGGAATCCT 1378
Query 1396 GA 1397
||
Sbjct 1379 GA 1380
> Ahg910979 jgi|Araly1|910979|Al_scaffold_0001_1233
Length=1647
Score = 739 bits (400), Expect = 0.0
Identities = 436/454 (96%), Gaps = 0/454 (0%)
Strand=Plus/Minus
Query 1693 CAGCTCTTCGCGTTCTCTTCTCAAGTCTTCTAGTTCCATCCTGAGAGAATTCACCAAACT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1035 CAGCTCTTCGCGTTCTCTTCTCAAGTCTTCTAGTTCCATCCTGAGAGAATTCACCAAGCT 976
Query 1753 TCGGAGAGAGCATTCGTCATCAGCAGCTTCTTGTAGCCTCATCGTTGCTTCATTAAGCTC 1812
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 975 ACGGAGAGAGCATTCGTCATCCGCAGCCTCCTGTAGCCTCATCGTTGCTTCATTAAGCTC 916
Query 1813 ATTTGTAATGATCTTAACCGTGTTCATCTCTGATTCATGAGCTTTCTTCATCTCTTCCCG 1872
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTTTGTAATGATTTTAACCGTGTTCATCTCTGATTCATGAGCTTTCTTCATCTCTTCCCG 856
Query 1873 TAAAACCTCAATCTCTGAAGTTGTCTCTAACAGCTTGGCTTCAAGAGTTCTTGAGAGCTC 1932
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 855 TAAAACCTCAATCTCCGAAGTTGTCTCTATCAGCTTGGCTTCAAGAGTTCTTGAGAGCTC 796
Query 1933 AGGCTCATATTCTTTCCTCAACACTAGCAGTTTCTTCTCTGCCTCTTCAACAGCAGTTCT 1992
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 AGGCTCATATTCTTTCCTCAACACTAGCAGTTTCTTCTCTGCCTCCTCAACAGCAGTTCT 736
Query 1993 ATAACATTCTCGTAAATCGTCTTTTTCCTTAACAATATTAGCGTGCTCCTGCAGATTCTG 2052
||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 735 GTAACACTCTCGTAAATCGTCTTTTTCCTTCACAATATTGGCGTGCTCCTGCAGATTCTG 676
Query 2053 AGCAGCCGCTAGCTTGAGCTGATGAATCGCATCTTTCATATCCGAAATCTCCTTAGAAAG 2112
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 675 AGCAGCCGCTAGCTTGAGCTGATGAATCGCGTCTTTCATATCCGATATCTCCTTGGAAAG 616
Query 2113 CTCGTTAACTTTGGCGGAGTTGACTTGGAGTGCA 2146
|||||||||||| |||||||||||||||||||||
Sbjct 615 CTCGTTAACTTTCGCGGAGTTGACTTGGAGTGCA 582
Score = 243 bits (131), Expect = 6e-63
Identities = 133/134 (99%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1562 TAAGCAAGTTGTACATTTTCTTGTTGACGCCATCTCTGCAACTCACTTTCCACCATTCTC 1621
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 TAAGCATGTTGTACATTTTCTTGTTGACGCCATCTCTGCAACTCACTTTCCACCATTCTC 1587
Query 1622 TTTGCAGCTTCTGCAGATTCTGCTGACTTCTGAGCCAATTCCGTTGCTTGCTTCATCTCC 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TTTGCAGCTTCTGCAGATTCTGCTGACTTCTGAGCCAATTCCGTTGCTTGCTTCATCTCC 1527
Query 1682 TCTATCGCTTTCAG 1695
||||||||||||||
Sbjct 1526 TCTATCGCTTTCAG 1513
> Ahg920054 jgi|Araly1|920054|scaffold_101335.1
Length=1438
Score = 364 bits (197), Expect = 1e-99
Identities = 829/1117 (74%), Gaps = 112/1117 (10%)
Strand=Plus/Plus
Query 52 ACGTGGCAGTGATCGGAGCCGGAGCCGCCGGACTCGTAGCTGCAAGAGAGCTCCGCCGCG 111
|||||||||| ||||||||||||||||| || | || ||||| | ||||| || || |
Sbjct 58 ACGTGGCAGTAATCGGAGCCGGAGCCGCTGGGTTAGTGGCTGCTCGTGAGCTACGTCGTG 117
Query 112 -AGAATCACACCGTCGTCGTTTTCGA--ACGTGACTCAAAAGTCGGAGGTC-TCTGGG-T 166
|| ||| | || ||||| || || || || | ||| ||||||| | | |||| |
Sbjct 118 AAG-GCCACTCAGTTGTCGTCTTAGAGCGCGGGA-GCCAAA-TCGGAGG-CGTGTGGGCT 173
Query 167 ATACACAC-CTAACAG-CGAACCAGACCCGCTTAGCCTCGATCCAAACCGAACCATCGTC 224
||||| | || | || |||||| ||||||||||||||||| || | |||| || |||||
Sbjct 174 -TACAC-CTCTGA-AGTCGAACCTGACCCGCTTAGCCTCGACCCGACCCGACCCGTCGTC 230
Query 225 CATTCAAGCGTCTA-TGATTCTCTCCGAACC-A-ATCTCCCACGAGAGTGCATGGGTTAC 281
|| || ||| |||| ||| || | || ||| | ||| |||| |||| |||||||||| |
Sbjct 231 CACTCGAGCCTCTACAGATCCT-TACGTACCAACATC-CCCA-GAGAATGCATGGGTTTC 287
Query 282 AGAGACTTCCCCTTCGTG-CCTCGACCTGAAGATGACGAATCAAGAGACT-CGAGAAGGT 339
| |||||||| || | | || ||||| | | |||| || || || | |||||||
Sbjct 288 ACCGACTTCCCTTTTGCGACC-CGACC---ACACGACGGGTCGAGGGA-TCCGAGAAGAC 342
Query 340 ACCCTAG-TCACAGAGAAGTTCTTGCTTACCTTG-AAGACTTCGCTAGAGAATTC-AAAC 396
| || || ||| | || ||||||||||||| || |||||| |||| ||||||| | |
Sbjct 343 ATCC-AGCTCATACTGAGGTTCTTGCTTACC-TGCGAGACTTTGCTAAAGAATTCGATA- 399
Query 397 TTGTGGAGATGGTTCGATTTAAGACCGAAGTAGTT-----CTTGTC-GA--GC--CTGAA 446
| | ||||||||| | || ||| || || ||| | | | || || | |||
Sbjct 400 TCGAGGAGATGGTAAGGTTCGGGACGGAGGTTGTTAAGGCCGAG-CAGATGGCGGCGGAA 458
Query 447 ---GA-TA-AGA----AATGGAGGGTTCAATCCAAAAATTCAGATGG-GATCT-CCAAAG 495
|| | ||| | ||||||||| |||| | || || ||||| | | | || |
Sbjct 459 GGGGAGGAGAGAGGGGAGTGGAGGGTTGAATCGAGAAGCTCCGATGGTG-T-TGCC--A- 513
Query 496 ATGAGATCTTTGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTAGAGTTGCTC 555
| ||||| | || || ||||| |||||||| ||||| |||||||| ||| | |||||
Sbjct 514 ACGAGATATACGACGCCGTTGTGGTTTGTAACGGACACTATACAGAGCCTCGTCATGCTC 573
Query 556 ATGT-TC-CTGGTATAGATTCATGGCCAGGGAAGCAGATTCATAGCCACAATTACCGTGT 613
| | || |||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 574 -T-TATCACTGGCATAGATTCATGGCCAGGCAAGCAAATTCACAGCCACAATTACCGTGT 631
Query 614 TCCTGATCAATTCAAAGACCAGGTGGTGGTAGTGATAGGAAATTTTGCGAGTGGAGCTGA 673
|||||||||||||||||| ||||||||| ||||||| |||| | |||||||||| |||
Sbjct 632 TCCTGATCAATTCAAAGATCAGGTGGTGATAGTGATCGGAAGCTCAGCGAGTGGAGTTGA 691
Query 674 TATCA-GCAGGGACATAACGGGAG-TGGCTAAAGAAGTCCA--TATCGCGTCTAGATCGA 729
||| | |||| || ||| || || | || ||||||||||| |||| |||||||| |
Sbjct 692 TAT-ATGCAGAGATATAGCGC-AGGTCGCGAAAGAAGTCCACGTATCA--TCTAGATC-A 746
Query 730 A-TCCATCTAAGACATACT-CAA-AA-CTTCCCGGGT-CAAACAATCTATGGCTTCACTC 784
| | || | | |||| || | | || |||||||| | | | ||||||||||||||||||
Sbjct 747 ACTTCACC-A-GACAC-CTACGAGAAGCTTCCCGGTTACGA-CAATCTATGGCTTCACTC 802
Query 785 TATGATAGAAAGTGTACACGAAGATGGGACGATTGTTTTTC-AGAACGGTAAG---GTTG 840
| ||| |||| || | |||||| || || | ||||| | ||||| | ||| |||
Sbjct 803 AACGATTGAAATTGCCCGCGAAGACGGTTCGGTGGTTTT-CGAGAACAGAAAGACAGTT- 860
Query 841 TACAAGCTGATACCATTGTGCATTGCACTGGTTACAAATATCACTTCCCATTTCTCAACA 900
||| || ||||||||| ||||||| || || ||||| ||| ||||||| ||||| |||
Sbjct 861 TAC--GCGGATACCATTATGCATTGTACCGGGTACAAGTATTACTTCCCGTTTCTTGACA 918
Query 901 CCAATGGCT-ATATT-ACTGTTGAGGATAA-CTGTGTTGGACCGCTT-TACGAA-CATGT 955
| || || | | | | ||||| || ||||| | ||||||||||| || || || |||||
Sbjct 919 CGAAAGG-TGA-AGTGACTGTCGACGATAATC-GTGTTGGACCG-TTGTAT-AAGCATGT 973
Query 956 CTTTCCGCCTGCGCTTGCTCCCGGGC-TTTCCTTCATCGGTTTACCCTGG-ATGA-CACT 1012
||||| || || ||||| |||| || |||| || ||||| ||||| ||| | || ||||
Sbjct 974 ATTTCCTCCAGCTCTTGC-CCCGAGCCTTTCGTTTATCGGCTTACCATGGCA-GATCACT 1031
Query 1013 GCAATTCTTTATGTTTGAGCTCCAAAGCAAGTGGGTGGCTGCAGCTTTGTCTGGCCGGGT 1072
|| ||| ||||||||||| |||||||||||||| || |||| |||||| ||||||||
Sbjct 1032 CCA-TTCCCGATGTTTGAGCTTCAAAGCAAGTGGGTCGCAGCAGTTTTGTCCGGCCGGGT 1090
Query 1073 CA-CACTTCCTTCAG-AAGA-GAAAATGATGGAAGAC 1106
| | || || || | |||| || | ||| |||||||
Sbjct 1091 -ATCTCTCCCATC-GCAAGACGAGA-TGAGGGAAGAC 1124
> Ahg475088 jgi|Araly1|475088|fgenesh2_kg.2__218__AT1G62600.1
Length=1398
Score = 206 bits (111), Expect = 7e-52
Identities = 792/1109 (71%), Gaps = 93/1109 (8%)
Strand=Plus/Plus
Query 45 TCACTCAACGTGGCAGTGATCGGAGCCGGAGCCGCCGGACTCGTAGCTGCAAGAGAGCTC 104
|||| | |||||||||| ||||| |||||||| |||||| | || || || |||||||
Sbjct 61 TCACACCACGTGGCAGTTATCGGCGCCGGAGCTGCCGGATTAGTCGCGGCGCGAGAGCTT 120
Query 105 CGCCGCGAGAA--TCACACCGTCGTCGTTTTCGAACGTGACTCAA--AAGTCGGAGG-TC 159
|| || | ||| ||| | || ||||| |||| | | ||| || |||||||||| |
Sbjct 121 CGACG-G-GAAGGTCATTCGGTGGTCGTCTTCG-A-GAGACAAAAGCAAGTCGGAGGAAC 176
Query 160 TCTGGGTATACACAC-CTAACAGCGAACCAGACCCGCTT-AGCCTCGATCCAAACCGAAC 217
| ||| | || || | | | | |||||| || || || ||| | ||||| | |||| |
Sbjct 177 T-TGGATTTATAC-CGATCATATCGAACCCGATCC-ATTAAGCGTTGATCCGACCCGATC 233
Query 218 CATCGTCCATTCAAGCGTCTATGATTCTCTCCGAACCAATCTCCCACGAGAGTGCATGGG 277
| | || ||||| |||||||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 234 CGTTGTTCATTCGAGCGTCTATGGCTCTCTCCGAACTAATCTCCCTCGTGAGTGTATGGG 293
Query 278 TTACAGAGACTTCCCCTTCGTGCCT-CGACCTGAAGATG-A-C-GAATCAAGAGACT-CG 332
|||||||| || || ||| | | || ||| | || | | ||||| ||||| | ||
Sbjct 294 ATACAGAGATTTTCCGTTCACG-ATCCGTTCTG--G-TGTATCGGAATCTAGAGA-TCCG 348
Query 333 AGAAGGTACCCTAGTCACAGAGAAGTTCTT-GCTTACCTTG-AAGACTTCGCT-A-GAGA 388
|| |||| || ||||| || |||||| || || || ||| |||| |||||| | |||
Sbjct 349 AGGAGGTTTCCGAGTCATAGTGAAGTT-TTGGCGTA-TTTGCAAGATTTCGCTAAGGAG- 405
Query 389 ATT-CAAACTTGTGGAGATGGTTCGATTTAAGAC--C-GAAGT--A-GTT-CT-TGTC-G 438
|| | | ||| ||||||| |||| ||| |||| | | || | ||| || | | |
Sbjct 406 TTTGC-GA-TTGAGGAGATGATTCGGTTTGAGACTGCGGTTGTGAAGGTTGCTCCGGCGG 463
Query 439 -AGCCTGAA-G-AT-AAGAAATGGAGGGTTCAATCCA---A-AAATTCAGATG-G-GATC 488
| | || | || ||||||||| || |||| | | ||| ||| | | | ||
Sbjct 464 CGGAC-AAAGGAATCGGGAAATGGAGAATTGAATCTATGGAGAAA--GAGAAGAGAGTTC 520
Query 489 -TCCAAAGATGAGATCTT-TGATGCTGTTGTTGTTTGTAATGGACATTATACAGAACCTA 546
| | |||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 521 GT-C-GTGATGAGAT-TTATGATGCTGTTGTTGTTTGTAATGGACATTATATTGAACCTC 577
Query 547 GAGTTGCTCATGTTCCTGGTATA-GATTCATGGCCAGGGAAGCAGATTCATAGCCACAAT 605
| | ||| | ||||||| ||| | ||| |||||||||||| |||| ||||| || |||
Sbjct 578 GTCTCGCTGAAATTCCTGGGATAAG-TTCTTGGCCAGGGAAGGAGATGCATAGTCATAAT 636
Query 606 TACCGTGTTCCTGATCAATTCAAAGACCAGGTGGTGGTAG-TGATAGGAAATTTTGCGAG 664
|| ||| | || || | || | ||| ||||| || || | | ||||| || | ||| ||
Sbjct 637 TATCGTATACCGGAACCGTTTAGAGATCAGGTTGTTGT-GCTTATAGGGAACTCTGCTAG 695
Query 665 TGGAGCTGATATCAGCAGGGACATAACGGGAGTGGCTAAAGAAGTCCATATCGCGTCTAG 724
|| | |||||| || ||||| || | |||| || ||||| || ||| | || | |||
Sbjct 696 TGCTGATGATATAAGTAGGGATATTGCTAGAGTTGCCAAAGAGGTTCATGTGGCTTGTAG 755
Query 725 ATCGAATCCAT-CTAAGACAT--ACTCAAAACTTCCCGGGT-CAAACAATCTATGGCTTC 780
|| ||| || || | || | | || | | ||||| | || ||||||||| | |
Sbjct 756 GTCAAATG-ATGCTGATACGTTTA-TCGAG-CGGCCCGGTTACAGT-AATCTATGGATGC 811
Query 781 ACTCTATGATAGAAAGTGTACACGAAGATGGGAC-GATTGTTTTTCAGAACGGTAAG--G 837
| || ||||| || |||| || || ||||| | | | |||||||||||||| || |
Sbjct 812 ATTCAATGATTGAGCGTGTCCATGAGGATGGTTCTG-TGGTTTTTCAGAACGGGAAAACG 870
Query 838 -TTGTACAAGCTGATACCATTGTGCATTGCACTGGTTACAAATATCACTTCCCATTTCTC 896
|| | | | |||| ||| ||||||||||||| || || ||||||||||| |||||
Sbjct 871 ATT-T-CG-GTTGATGTAATTATGCATTGCACTGGGTATAAGTATCACTTCCCGTTTCTT 927
Query 897 -AACACCAATGGCTATATTACTGTTGAGGATAACTGTGTTGGACCGCTT-TACGAACATG 954
|| |||||||| || ||||||| || |||||| |||| || || || ||| || | |
Sbjct 928 GAA-ACCAATGGAAATGTTACTGTAGATGATAACCGTGTCGGGCCA-TTGTACAAAGACG 985
Query 955 TCTTTCCGCCTGCGCTT-GCTCCCGGGCTTTCCTTCATCGGTTTACCCTGGATGACACTG 1013
|||| || || || ||| || || |||| |||||||| || |||| |||| | |
Sbjct 986 TCTTCCCTCCAGC-CTTTGCACCATGGCTCTCCTTCATTGGGATACCATGGAAGGTTGTA 1044
Query 1014 CAATT-CTTTATGTTTGAGCTCCAAAGCAAGTGGGTGGCTGCAGCTTTGTCTGGCCGGGT 1072
| || | | ||||||||||| || ||||||||| | || | | |||||| || ||| |
Sbjct 1045 CCTTTTCCT-ATGTTTGAGCTGCAGAGCAAGTGGATTGCGGGTGTTTTGTCAGGTCGGAT 1103
Query 1073 CACACTTCCTTCAGAAGAGAA-A-ATGAT 1099
| |||| |||||| ||| ||| | |||||
Sbjct 1104 CCCACTGCCTTCA-AAG-GAAGATATGAT 1130
> Ahg475086 jgi|Araly1|475086|fgenesh2_kg.2__216__AT1G62620.1
Length=1406
Score = 202 bits (109), Expect = 9e-51
Identities = 763/1063 (72%), Gaps = 107/1063 (10%)
Strand=Plus/Plus
Query 45 TCACTCAACGTGGCAGTGATCGGAGCCGGAGCCGCCGGACTCGTAGCTGCAAGAGAGCTC 104
|||| | |||||||||| ||||| || ||| ||||||| || || || || |||||||
Sbjct 30 TCACACCACGTGGCAGTTATCGGTGCTGGACCCGCCGGTCTAGTGGCGGCGCGAGAGCTT 89
Query 105 CGCCGCGAGAA--TCACACCGTCGTCGTTTTCGA-ACGTGACTCAA-AAGTCGGAGG-TC 159
|| || | ||| |||| | || ||||||||||| | | | || |||| ||||| |
Sbjct 90 CGACG-G-GAAGGTCACTCGGTGGTCGTTTTCGAGAAG-CA-AAAACAAGTTGGAGGAAC 145
Query 160 TCTGGGTATACACAC-CTAACAG-CGAACCAGACCCGCTT-AGCCTCGATCCAAACCGAA 216
|||| | ||||| | | | || |||| | || ||| || || | || || | ||||
Sbjct 146 -CTGGATCTACAC-CGATGA-AGTCGAATCGGATCCG-TTAAGTGTTGACCCGACCCGAT 201
Query 217 CCATCGTCCATTCAAGCGTCTATGA-TTCTCTCCGAACCAATC--TCCCACGAGAGTGCA 273
|| | |||||||||||||||||| | |||||||||| ||| | | || |||||||| |
Sbjct 202 CCGTTGTCCATTCAAGCGTCTAT-AGCTCTCTCCGAATCAA-CGGTACC-CGAGAGTGTA 258
Query 274 TGGGTTACAGAGACTTCCCCTTCGTGCCTCG-ACCTGAAGATG-A-C-GAATCAAGAGAC 329
|| |||||||||| ||| |||||| ||| || | | || | | ||||| |||||
Sbjct 259 CCGGATACAGAGACTACCCGTTCGTGGTTCGTTCC-G--G-TGTATCGGAATCTAGAGA- 313
Query 330 TC-GAGAAGGTACCCTAGTCACAGAGAAGTTCTT-GCTTACCTTG-AAGACTTCGCTAGA 386
|| ||| |||| || |||||| | |||||| || || || ||| |||| ||||| |||
Sbjct 314 TCGGAGGAGGTTTCCGAGTCACGGTGAAGTT-TTGGCGTA-TTTGCAAGATTTCGCAAGA 371
Query 387 GA-ATTCAAACTTGTGGAGATGGTTCGATTTAAGACCGA---AGT--A-GTT-CT-TGTC 437
|| || | ||| |||||||||| | ||| |||| || || | ||| || | |
Sbjct 372 GAGTTTGGGA-TTGAGGAGATGGTTAGGTTTGAGACGGAGGTTGTGAAGGTTCCTCCGGC 430
Query 438 GAGCCTGAA-GA-TAA----GAAATGGAGGGTTCAATCCAA---A-AATTCAGATG-G-G 485
| | | ||| || || ||||||||| ||| ||| ||| | || ||| | | |
Sbjct 431 G-G-CGGAAGGAGAAATCGGGAAATGGAGAGTTGAAT-CAACGGAGAA-GGAGAAGAGAG 486
Query 486 ATC-TCCAAAGATGAGATCTT-TGATGCTGTTGTTGTTTGTAATGGACATTATACAGAAC 543
|| | | |||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 487 TTCGT-C-GGGATGAGAT-TTATGATGCTGTTGTTGTTTGTAATGGACATTATGTTGAAC 543
Query 544 CTAGAGTTGCTCATGTTCCTGGTATA-GATTCATGGCCAGGGAA-GCAGATTCATAGCCA 601
|| | | ||||| ||||||||||| | ||| ||||||||||| | |||| ||||||||
Sbjct 544 CTCGTCTCGCTCAAATTCCTGGTATAAG-TTCTTGGCCAGGGAAAG-AGATGCATAGCCA 601
Query 602 CAATTACCGTGTTCCTGATCAATTCAAAGACCAGGTGGTGGTAG-TGATAGGAAATT-TT 659
||||||||| |||| || | |||||||| ||||| || || | | || ||||| | ||
Sbjct 602 TAATTACCGTATTCCGGAACCGTTCAAAGATCAGGTTGTTGT-GCTTATTGGAAACTCTT 660
Query 660 GCGAGTG--GAGCTGATATCAGCAGGGACATAACGGGAGTGGCTAAAGAAGTCCATATCG 717
| || | ||| ||||| || |||||||| | | | || ||||| || ||| | |
Sbjct 661 -CAAGCGCTGAG--GATATAAGTAGGGACATTGCTACATTTGCCAAAGAGGTTCATGTGG 717
Query 718 CGTCTAGATCGAATCCATCTAAGACAT--ACTCAAAACTTCCCGGGT-CAAACAATCTAT 774
| | ||| || |||||| || | || | | ||||| | |||| | || |||||||
Sbjct 718 CTTGTAGGTCAAATCCAGCTGATACGTTTA-TCAAA-CAGACCGGTTACAGT-AATCTAT 774
Query 775 GG-CTTCACTCTAT-GATAGAAAGTGTACACGAAGATGGGACGATTGTTTTTCAGAACGG 832
|| | || || || ||| || |||| || || ||||| || | ||||||||||||||
Sbjct 775 GGACG-CATTC-ATCGATTGAGTGTGTCCATGAGGATGGTTCGGTGGTTTTTCAGAACGG 832
Query 833 TAAG--G-TTGTACAAGCTGATACCATTGTGCATTGCACTGGTTACAAATATCACTTCCC 889
||| | || | | | ||||| ||| ||||||||||||| || || |||||||| ||
Sbjct 833 GAAGACGATT-T-CG-GTTGATATTATTATGCATTGCACTGGGTATAAGTATCACTTTCC 889
Query 890 ATTTCTCAACACCAATGGCTATAT-T-ACTGTTGAGGATAACTGTGTTGGACCGCTT-TA 946
||||| | || ||||| || | | | ||| || |||||| |||| ||||| || ||
Sbjct 890 GTTTCTTGATACGAATGGA-AT-TGTCAGTGTAGATGATAACCGTGTCGGACCA-TTGTA 946
Query 947 CGAACATGTCTTTCCGCCTGCGCTTGCTCCCGGGCTTTCCTTCATCGGTTTACCCTGG-A 1005
| || | ||||| || || || |||| || ||||||| |||||||| |||| ||| |
Sbjct 947 CAAAGACGTCTTCCCTCCAGCATTTGCACCTTGGCTTTCTTTCATCGGGATACCATGGCA 1006
Query 1006 --TGACACTGCAATTCTTTATGTTTGAGCTCCAAAGCAAGTGG 1046
|| || | ||| |||||||||||| || |||||||||
Sbjct 1007 GGTGTTAC--CT-TTCCCTATGTTTGAGCTGCAGAGCAAGTGG 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5