BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12150.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910979 jgi|Araly1|910979|Al_scaffold_0001_1233 2669 0.0
> Ahg910979 jgi|Araly1|910979|Al_scaffold_0001_1233
Length=1647
Score = 2669 bits (1445), Expect = 0.0
Identities = 1581/1648 (96%), Gaps = 4/1648 (0%)
Strand=Plus/Plus
Query 113 ATGGTGAACATTAGAGTACAAAAAGCTCCGGAATCTCCGAGGACGATGGAGGTGGGAGAA 172
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAACATTAGAGTACAAAAAGGTCCGGAATCTCCGAGGACGATGGAGGTGGGAGAA 60
Query 173 ATAGACACAAGAGCACCGTTCCAATCGGTGAAAGCTGCGGTGAGCTTGTTCGGAGAAGTT 232
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGACACAAGAGCACCATTCCAATCGGTGAAAGCTGCGGTGAGCTTGTTCGGAGAAGTT 120
Query 233 GCAGTCTCAAAGCAAAGAAGTACTCCAAGGCGATCTCGACTCTCCTCTGAGAGCGTTTGC 292
|||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 GCAGTCTCTAGGCAAAGAAGTACTCCAAGGCGATCACGACTTTCCTCTGAGAGCGTTTGC 180
Query 293 GACAAGGAAACACAGCTAATGCTGGTCCACAAGGAATTCATGAAGATCAAGCAAAAGCTT 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACAAAGAAACACAGCTAATGCTGGTCCACAAGGAATTCATGAAGATCAAGCAAAAGCTT 240
Query 353 GACAACGCTGAGAGCACAAGATCTCGTGCTCTAGACGATCTCTCAAAGGCGAAGAAGACA 412
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 GACAACGCTGAGAGCACAAGATCTCGTGCTCTTGACGATCTCTCAAAGGCAAAGAAGACA 300
Query 413 ATGGAGGATCTTAGCAACAAACTTGAGACTGTCAACAAGTCTAAGCAATCAGCTATTGAC 472
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 301 ATGGAGGATCTTAGCAACAAACTTGAGACTGTCAACAAGTCCAAGCAATCCGCTATTGAC 360
Query 473 ACCAAAGAAACTGTCCAACAGCGGGAAGAACAGCTTGAGCATGATAAGTGTCATGGCTCT 532
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCAAAGAAATTGTCCAACAGCGCGAAGAACAGCTTGAGCATGATAAGTGTCATGGCTCT 420
Query 533 CCTCCTCATCACCATGAACTTGACGTCGCTAGAGAACAATATATCTCCACCACCGTTGAA 592
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CCTCCTCACCACCATGAACTTGACGTCGCTAGAGAACAATATATCTCTACCACCGTTGAA 480
Query 593 CTTGATGCTGCAAAACAGCAGCTCAACAAAATTAGACAGAGCTTTGATTCCGCTATGGAT 652
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCGATGCTGCGAAACAACAGCTCAACAAAATTAGACAGAGCTTTGATTCCGCTATGGAT 540
Query 653 TTCAAAGCCACGGCCTTA-AACCAGGCTGCAGAAGCTCAACGTGCACTCCAAGTCAACTC 711
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TTCAAAGCCACGGCC-TACAACCAGGCTGCAGAAGCCCAACGTGCACTCCAAGTCAACTC 599
Query 712 CGCCAAAGTTAACGAGCTTTCTAAGGAGATTTCGGATATGAAAGATGCGATTCATCAGCT 771
||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 600 CGCGAAAGTTAACGAGCTTTCCAAGGAGATATCGGATATGAAAGACGCGATTCATCAGCT 659
Query 772 CAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCTAATATTGTTAAGGAAAAAGACGA 831
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 660 CAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCCAATATTGTGAAGGAAAAAGACGA 719
Query 832 TTTACGAGAATGTTATAGAACTGCTGTTGAAGAGGCAGAGAAGAAACTGCTAGTGTTGAG 891
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 TTTACGAGAGTGTTACAGAACTGCTGTTGAGGAGGCAGAGAAGAAACTGCTAGTGTTGAG 779
Query 892 GAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGTTAGAGACAACTTC 951
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 GAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGATAGAGACAACTTC 839
Query 952 AGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGAATCAGAGATGAACACGGT 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGAATCAGAGATGAACACGGT 899
Query 1012 TAAGATCATTACAAATGAGCTTAATGAAGCAACGATGAGGCTACAAGAAGCTGCTGATGA 1071
||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 900 TAAAATCATTACAAACGAGCTTAATGAAGCAACGATGAGGCTACAGGAGGCTGCGGATGA 959
Query 1072 CGAATGCTCTCTCCGAAGTTTGGTGAATTCTCTCAGGATGGAACTagaagacttgagaag 1131
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGAATGCTCTCTCCGTAGCTTGGTGAATTCTCTCAGGATGGAACTAGAAGACTTGAGAAG 1019
Query 1132 agaacgcgaagagctgcagcagaaagaagcagagagattagagaTTGAGGAAACAAAAAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAACGCGAAGAGCTGCAGCAGAAAGAAGCAGAGAGATTAGAGATTGAGGAAACAAAAAA 1079
Query 1192 GTTGGAAGCTCTCAAGCAAGAGAGCTTGAAACTGGAGCAAATGAAAACAGAAGCTATTGA 1251
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GTTGGAAGCTCTCAAGGAAGAGAGCTTGAAACTGGAGCAAATGAAAACAGAAGCTATGGA 1139
Query 1252 AGCAAGAAACGAAGCTGCAAATATGAATAGGAAGATAGAGAGTCTGAAGAAAGAAACAGA 1311
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 AGCAAGAAAGGAAGCTGAAAATATGAATAGGAAGATAGAGAGTCTGAAGAAAGAAACCGA 1199
Query 1312 GGCCGCGATGATAGCTGCTGAGGAAGCTGAAAAGAGACTAGAGCTTGTTATAAGAGAAGT 1371
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGCTGCGATGATAGCTGCAGAGGAAGCTGAAAAGAGACTAGAGCTTGTTATAAGAGAAGT 1259
Query 1372 GGAGGAGGCGAAATCCGCTGAAGAGAAAGTCCGCGAAGAGATGAAGATGATATCTCAGAA 1431
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 TGAAGAGGCGAAATCTGCTGAAGAGAAAGTCCGCGAAGAGATGAAAATGATATCTCAGAA 1319
Query 1432 GCAAGAGAGCAAGAAACAAGATGAAGAATCATCTGGTTCAAAGATAAAAATCACAATTCA 1491
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 GCAAGAGAGTAAGAAACATGATGATGAATCATCTGGTTCAAAGATAAAAATCACAATTCA 1379
Query 1492 AGAGTTTGAATCTTTGAAACGAGGAGCAGGGGAAACAGAGGCTGCAATCGAAAAGAAGTT 1551
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||
Sbjct 1380 GGAGTTTGAATCTTTGAAACGTGGAGCAGGGGAAACAGAGACTGCAATAGAAGAGAAGTT 1439
Query 1552 GGCAACTATAGCAGCTGAGCTTGAAGAGATCAACA-AACGAAGAGCCGAAGCGGATAATA 1610
|||| |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||
Sbjct 1440 GGCAGCTATAGCAGCTGAGCTAGAAGAGATCAACAGAA-GAAAAGCCGAAGCGGATAATA 1498
Query 1611 AGTTAGAAGCGAACCTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGA 1670
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TGTTGGGAGCGAACCTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGA 1558
Query 1671 AGTCAGCAGAATCTGCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGC 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGTCAGCAGAATCTGCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGC 1618
Query 1731 GTCAACAAGAAAATGTACAACTTGCTTA 1758
||||||||||||||||||||| ||||||
Sbjct 1619 GTCAACAAGAAAATGTACAACATGCTTA 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5