BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12160.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1 2311 0.0
Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231 1002 0.0
Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176 255 5e-67
Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1 217 3e-55
> Ahg471366 jgi|Araly1|471366|fgenesh2_kg.1__1320__AT1G12160.1
Length=1482
Score = 2311 bits (1251), Expect = 0.0
Identities = 1406/1483 (95%), Gaps = 2/1483 (0%)
Strand=Plus/Plus
Query 1 CTATGACCAGCGTAATCACCTCACGTGCTCGTCACGTGGCCGTGATCGGACTAGGAGCCG 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CTATGACCAGCCTAATCACCTCACGTGCTCGTCACGTGGCCGTGATCGGACTCGGAGCCG 60
Query 61 CCGGCCTCGTGGCGGTTCGAGAGCTTCGTCGTGAAGGTCACACCGTCATCGGTTTCGAGC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGGCTCGTGGCGGTTCGAGAGCTTCGTCGTGAAGGTCACACCGTCATCGGTTTCGAGC 120
Query 121 GTGAGAAACATGTTGGTGGACTCTGGGTGTACACTGATCGAGTCGATTCAGACTCGGTTA 180
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 121 GTGAGAAACATGTTGGTGGACTCTGGGTTTACACTGATCGAGTCGAACCAGACTCACTTA 180
Query 181 GCGTTGACCCGGATCGAACCATCGTACACTCGAGCATCTACCAGTCCCTCCGCACCAATC 240
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 181 GCGTTGACCCGGATCGAACCATCGTACACTCGAGCGTCTACCAATCCCTCCGCACAAATC 240
Query 241 TACCACGAGAGTGTATGGGTTACAGTGACTTTCCATTCGTTACCCGATCCAGTGACGGCG 300
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||
Sbjct 241 TACCACGAGAGTGTATGGGTTACAGTGACTTTCCCTTCGTAACCCGATCCGGTGAGGGCG 300
Query 301 ACCCGAGACGGTACCCCGATCATAGGGAAGTCTTGATGTACCTTCAAGATTTCGCCAAAG 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCCGAGACGGTACCCGGATCATAGGGAAGTCTTGATGTACCTTCAAGATTTCGCCAAAG 360
Query 361 AGTTCAAGATCGAAGATATGATCCGATTTGAGACAGAGGTTTTGTGTGTGGAGCCGTCGC 420
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||
Sbjct 361 AGTTCAAGATCGAAGAAATGATCCGATTCGATACAGAGGTTTTGTGTGTGGAGCCGACGC 420
Query 421 CGGAGAATAACCGTAAATGGAGAGTTCAGTTTAAGAGCTCAAATGGTGTCTCCGGCGAAG 480
|||||||||||||||| ||||| ||||| ||||| ||||||| |||||||||||||||||
Sbjct 421 CGGAGAATAACCGTAATTGGAGTGTTCAATTTAAAAGCTCAAGTGGTGTCTCCGGCGAAG 480
Query 481 AAATCTTCGACGCGGTCGTGGTTTGCAATGGTCACTTCACTGAGCCTCGTCTTGCTCATA 540
||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 481 AAATCTTTGACGCTGTCGTAGTTTGTAATGGTCACTTCACTGAGCCTCGTCTTGCTCACA 540
Query 541 TTCCTGGGATAGAGTCATGGCCAGGAAAGCAGATCCATAGCCACAATTATCGAATTCCAG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTCCTGGGATAGAGTCATGGCCAGGAAAGCAGATCCATAGCCACAATTATCGGATTCCAG 600
Query 601 ATCCATTCAAAGATGAGGTGGTGATAGTTATAGGAAGTCAAGCTAGTGGAAACGACATTA 660
|| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ATTTATTCAAAGATCAGGTGGTGATAGTTATAGGAAGTCAAGCCAGTGGAAACGACATTA 660
Query 661 GTACAGACATAGCAACCATTGCAAAAGAAGTCCATATCTCGTCTAAAATGGTTGCATCCG 720
||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 661 GTAAAGACATAGCAACCATTGCAAAAGAAGTTCATATCTCGTCTAAAGCGGTTGCATCCG 720
Query 721 ATTCATATGGCTGTTACGACAACCTACGGATTCACCCTACGATATATCGCGCCCGCGAGG 780
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 ATTCATACGGCTGTTACGACAACCTACGGATTCACCCTACGATATACCGCGCCCGCGAGG 780
Query 781 ATGGTTCCGTGGTATTCCGAAACGGGAAAGTGGTTTTTGCTGATGCTATAGTTCATTGCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGGTTCCGTGGTATTCCGAAACGGGAAAGTGGTTTTTGCTGATGCTATAGTTCATTGCA 840
Query 841 CTGGTTACAAGTATCATTTCCCGTTTCTTAAAACCAGTGGTTATGTGACTGTCGAGGATA 900
| ||||||||||||||||||||||||||||||| || ||||| || ||||| || ||||
Sbjct 841 CCGGTTACAAGTATCATTTCCCGTTTCTTAAAAACAACGGTTACGTTACTGTAGAAGATA 900
Query 901 ACCGTGTTGGACCTCTCTACAAACATGTTTTCCCACCCGCACTTGCGCCTGGGATCTCCT 960
||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 901 ACCGTGTTGGACCGCTCTACAAGCATGTTTTCCCACCCGCATTTGCGCCTGGGATCTCCT 960
Query 961 TTATTGGTTTACCTTTCATGGGGCTCCAGTTCTTTATGTTTGAAATCCAGAGCAAGTGGG 1020
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 961 TTATTGGTTTACCTTTCATGGGGCTTCAGTTCTTTATGTTTGAAATACAGAGCAAGTGGG 1020
Query 1021 TTGCTTCGGTTTTGTCGGGTCGAGTTAAGCTT-CCAGCAGAGGATAAGATGATGGAAGAG 1079
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 1021 TTGCTTCGGTTTTGTCGGGTCGGGTTAAGCTTCCCA-CAGAGGATAAGATGATGGAAGAG 1079
Query 1080 GCTGTAGCTTTCTACTCTAAGCTTGAAGATTTAGGGATTCCTAAGAGATATACACATTTT 1139
||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 GCTATAGCTTTCTACACGAAGCTTGAAGATTTGGGGATTCCTAAGAGATATACACATTTT 1139
Query 1140 CTAACCGATCCTCGAGGGAATCCAATGCTCGGGACGTTTAAACCGGAGGATGCAGTTGTG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTAACCGATCCTCGAGGGAATCCAATGCTCGGGACGTTTAAACCGGAGGATGCAGTTGTG 1199
Query 1200 ATCTCTCAAAGTGATTACTTCAACTGGATCGCAAAACAGTGTGGTTGCACGTCCATAGAA 1259
||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1200 ATCTCTCAAAGCGATTACTTCAACTGGATCGCAAAACAGTGTCGTTGCACGTACATAGAA 1259
Query 1260 CGTTGGAGAGAGCGATTATACAATGTCGCCATCAAGAAAGTTTTCTTTGGTGGCGACAGC 1319
||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 1260 CGTTGGAGAGAGCGAGTATACAATGTTGCCATCAAGAAAATTTTCTTTGGCGGCGACAGT 1319
Query 1320 TATCGCGATCGATGGGACGATGATCAACTCATCGAAGAAGTGTACCGCGAGTTCGCCAAA 1379
|||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1320 TATCGCGATCAATGGGACGATGATCAACTCATCGAAGAAGTGTACGGCGAATTCGCCAAA 1379
Query 1380 TTGAAACCGAACCAAGATTGTTCTTCTTAGTTTATCAATTCGGGAAGATGATTGAAATGT 1439
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1380 TTGAAATCGAACCAAGATTGTTCTTCTTAGTTTATCCATTCGAGAAGATGATTGAAATGT 1439
Query 1440 GACAAGGGAAAGTTAAAATCTGAAAATTGGGAAGTGTAATTGT 1482
||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1440 GACAAGGGAAAATTAAAATCTGAAAATTGGGAAGTGCAATTGT 1482
> Ahg910977 jgi|Araly1|910977|Al_scaffold_0001_1231
Length=1413
Score = 1002 bits (542), Expect = 0.0
Identities = 1057/1301 (81%), Gaps = 53/1301 (4%)
Strand=Plus/Plus
Query 30 CGTCACGTGGCCGTGATCGGA-CTAGGAGCCGCCGGCCTCGTGGCGGTTCGAGAGCTTCG 88
||| ||||||||||||||||| | ||||| ||||| || ||||||| ||||||||||||
Sbjct 31 CGTAACGTGGCCGTGATCGGAGC-CGGAGCTGCCGGGCTTGTGGCGGCTCGAGAGCTTCG 89
Query 89 TCGTGAAGGTCACACCGTCATCG-GTTTCGAGCGTGAGAAACATGTTGGTGGACTCTGGG 147
||||||||| |||||||||| || ||| |||||| ||||||| || || ||||| ||||
Sbjct 90 TCGTGAAGGGCACACCGTCACCGCCTTT-GAGCGTCAGAAACAAGTAGGAGGACTTTGGG 148
Query 148 TGTACACTGATC-GA-GTCGATTCAGACTCGGTTAGCGTTGACCCGGATCGAACCATCGT 205
| |||||| | | ||||| ||||||| | | | | ||||||||||||||||||||
Sbjct 149 TTTACACT--CCAAATGTCGAGCCAGACTCACTGAACATCGACCCGGATCGAACCATCGT 206
Query 206 ACACTCGAGCATCTACCAGTCCCTCCGCACCAATCTACCACGAGAGTGTATGGGTTACAG 265
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 207 CCACTCGAGCATCTACCAATCCCTCCGCACCAACCTCCCACGAGAGTGTATGGGTTACAG 266
Query 266 TGACTTTCCATTCGTTACCCGATCCAG-TGACG-G--C---GACCCGAGACGGTACCCCG 318
|||||| || || || |||| | || | |||| | | ||||||||||||||||| |
Sbjct 267 TGACTTCCCGTTTGTGACCC-AACCCGACGACGAGACCAGGGACCCGAGACGGTACCCGG 325
Query 319 ATCATAGGGAAGTCTTGATGTACCTTCAAGATTTCGCCAAAGAGTTCAAGATCGAA-GAT 377
|||| ||||||||| ||| ||| || || || |||||||||||||| | || || ||
Sbjct 326 ATCAGAGGGAAGTCATGAGGTATCTGCAGGACTTCGCCAAAGAGTTTGATAT-TAACGAG 384
Query 378 ATGATCCGATTTGAGACAGAGGTTTTGTGTGTGGAGCCGTCGCCGGAGAATAACCGTAAA 437
||||||||||| ||||||||||||||| ||||||||||| || ||||||| | ||| ||
Sbjct 385 ATGATCCGATTCGAGACAGAGGTTTTGCGTGTGGAGCCGGCGGCGGAGAACAGTCGTGAA 444
Query 438 TGGAGAGTTCAGTTTAAGAGCTCAAATGGTGTCTCCGGCGAAGAAATCTTCGACGCGGTC 497
||||||||||| |||| ||||||||||||||||||||||||||| |||||||| || |||
Sbjct 445 TGGAGAGTTCAATTTAGGAGCTCAAATGGTGTCTCCGGCGAAGATATCTTCGATGCAGTC 504
Query 498 GTGGTTTGCAATGGTCACTTCACTGAGCCTCGTCTTGCTCATATTCCTGGGATAGAGTCA 557
|| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 505 GTAGTTTGCAATGGTCACTTCACTGAGCCTCGTCTTGCCCATATTCCTGTTCTCTTGTCA 564
Query 558 TGGCCAGGAAAGCAGATCCATAGCCACAATTATCGAATTCCAGATCCATTCAAAGATGAG 617
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 565 TGGCCAGGAAAGCAAATCCATAGCCACAATTATCGTGTTCCAGATCCATTCAAAGATCAA 624
Query 618 GTGGTGATAGTTATAGGAAGTCAAGCTAGTGGAAACGACATTAGTACAGACATAGCAACC 677
||||||||||| ||||||| ||| | ||||||| || ||||| | ||||||||||||
Sbjct 625 GTGGTGATAGTGATAGGAAACCAATCCAGTGGAAGTGATATTAGCAGGGACATAGCAACC 684
Query 678 ATTG-CAAAAGAAGTCCATATCT-C-GTCTAAAA-TGGTTGCATCCGATTC--ATA-TGG 730
||| |||||||||||||||| | | | ||||| || | |||| ||| | | |
Sbjct 685 -TTGGCAAAAGAAGTCCATAT-TGCAG-CTAAATCTGAT-GCATACGAAAAGGAAAGTTC 740
Query 731 C-TGT-TACGACAACCTACGGATTCACCCTACGATAT-ATCGCGCCCGCGAGGATGGTTC 787
| | | || | ||| |||| ||||| || ||||| | | |||| | |||||||||
Sbjct 741 CATTTATA-G-CAATCTACATATTCATCCGACGAT-TGACCGCGTGTATGCGGATGGTTC 797
Query 788 CGTGGTATTCCGAA-ACGGGAAAGTGGTTTTTGCTGATGCTATAGTTCATTGCACTGGTT 846
|| || |||| || ||||||||||||| ||||| ||||| ||||| |||||||| || |
Sbjct 798 GGTTGTTTTCC-AAGACGGGAAAGTGGTATTTGCGGATGCCATAGTACATTGCACCGGCT 856
Query 847 ACAAGTATCATTTCCCGTTTCTTAAAACCAGTGGTTATGTGACTGTCGAGGATAACCGTG 906
|||||||| ||||| |||||| |||| | |||||||||||| || || ||||||||||
Sbjct 857 ACAAGTATTGCTTCCCATTTCTTGAAACTAATGGTTATGTGACCGTTGAAGATAACCGTG 916
Query 907 TTGGACC-TCTCTACAAACATGT-TTTCCCACCCGCACTTGCGCCTGGGATCTCCTTTAT 964
||||||| | | ||||| ||||| ||||| || || ||||| ||||| ||||||||||
Sbjct 917 TTGGACCAT-TATACAAGCATGTCTTTCCG-CCAGCGCTTGCCCCTGGCCTCTCCTTTAT 974
Query 965 TGGTTTACCTTTCA-TGGGGCTCCAGTTCTTTATGTTTGAAATCCAGAGCAAGTGGGTTG 1023
|||||||||| || ||| | | || |||||||||||||||||||| ||||| ||||| |
Sbjct 975 CGGTTTACCTT-CAATGGCGTTGCAATTCTTTATGTTTGAAATCCAAAGCAAATGGGTCG 1033
Query 1024 CTTCGGTTTTGTCGGGTCGAGTTAAGCTTCCAG-CAGAGGATAAGATGATGGAAGAGG-C 1081
|||||||||| |||||||| ||||||||||| | | ||||| || ||||||||||| |
Sbjct 1034 CTTCGGTTTTATCGGGTCGTGTTAAGCTTCC-GTCGGAGGACAAAATGATGGAAGATATC 1092
Query 1082 TGTAGCTTTCTACT-CTAAGCTTGAAGATTTAGGG-ATTCCTAAGAGATATACACATTTT 1139
|||||||||| | | |||||| || ||| ||| ||||| ||||||| ||| ||||||
Sbjct 1093 A-TAGCTTTCTA-TGCAAAGCTTAAATCTTT-GGGTATTCCCAAGAGATTTACGCATTTT 1149
Query 1140 CTAACCGATCCTCGAGGGAATCCAATGCTCGGGACGTTTAAACCGGAGGATGCAGTTGTG 1199
||||| |||||| | ||| ||| ||| ||| | | |||| || | || |||||| ||
Sbjct 1150 CTAACTAATCCTCAATGGACTCCGATGTTCGAAAAGCTTAAGCCACATGAAGCAGTTTTG 1209
Query 1200 ATCTCTCAAAGTGATTACTTCAACTGGATCGCAAAACAGTGTGGTTGCACGTCCATAGAA 1259
||||| |||| ||| || ||||||||||| || ||||||||||| || ||||||| |||
Sbjct 1210 ATCTCGCAAACTGAGTATTTCAACTGGATTGCGGAACAGTGTGGTAGCCCGTCCATCGAA 1269
Query 1260 CGTTGGAGAGAGCGATTA-TACAATGTCGCCATCAAGAAAG 1299
|||||||||||| || | |||||| | ||||| || ||||
Sbjct 1270 CGTTGGAGAGAG-GAACAATACAATATAGCCATAAAAAAAG 1309
> Ahg315143 jgi|Araly1|315143|fgenesh1_pm.C_scaffold_2000176
Length=1386
Score = 255 bits (138), Expect = 5e-67
Identities = 795/1098 (72%), Gaps = 101/1098 (9%)
Strand=Plus/Plus
Query 36 GTGGCCGTGATCGGA-CTAGGAGCCGCCGGCCTCGTGGCGGTTCGAGAGCTTCGTCGTGA 94
||||| ||||| ||| | ||||| ||||| ||| | | | | ||||||| | ||||||
Sbjct 37 GTGGCGGTGATTGGAGC-CGGAGCAGCCGGTCTCATAACAGCTAGAGAGCTCCTTCGTGA 95
Query 95 AGGTCACACCGTCATCGGT-TTCGAGCGTGAGAAACATGTTGGTGGACTCTGGGTGTA-- 151
|||||||||||| || || || || || |||||| | || || || || ||| | ||
Sbjct 96 AGGTCACACCGTTGTC-GTCTTTGAACGGGAGAAAGAAGTGGGAGGTCTTTGGATCTATT 154
Query 152 CA-CTGATCGAGTCGATTCAGACTCGGTTAGCGTTGACCCGGATCGA-ACCATCGTACAC 209
|| || | | ||| || ||| || ||||| | || ||| | ||| | ||| || ||
Sbjct 155 CACCT-A--AAACCGAATCCGACCCGCTTAGCCTCGATCCGAACCGATA-CATAGTCCAT 210
Query 210 TCGAGCATCTACCAGTCCCTCCGCACCAATCTACCACGAGAG--TGTATGGGT-TACAGT 266
|||||| ||||| |||| ||||| |||||| | || |||||| | |||||| | |||
Sbjct 211 TCGAGCGTCTACGAGTCTCTCCGAACCAATGT-CC-CGAGAGAAAGCATGGGTGT-CAGG 267
Query 267 GACTTTCCATTCGTTACC-CG-ATCCA-G-TG--AC-GGCGACCCGAGACGGTACCCCGA 319
|||||||| || || || || | | | || | | |||||||||||||| |||||
Sbjct 268 GACTTTCCCTT-TTTGCCACGTTTTGATGATGTCTCAAGAGACCCGAGACGGTA-CCCGA 325
Query 320 -TCATAGGGAAG-TCTTGATGTACCTTCAAGA-TTTCGCCAAAGAGTTCAAGATCGAAGA 376
||| || |||| ||||| |||||||||||| ||| || | |||||| || || || ||
Sbjct 326 GTCACAGAGAAGTTCTTG-CGTACCTTCAAGACTTT-GCTAGAGAGTTTAAAATAGAGGA 383
Query 377 TATGATCCGATTTGAGACAGAGGTTTTGTGTGTGGAGCCGTCGCCGGAGAATAACCGTAA 436
||| |||| || ||||| |||| | || | ||| | || | | | || | ||
Sbjct 384 CATGGTCCGGTTCGAGACCGAGG---T-CGT-TCGAGTTG-AACC-G-G-TTGACGGGAA 434
Query 437 ATGGAGAGTTCAGTTTAAGAGCTC---AAATGGTGTCTCCGGCGAAGAAATCTTCGACGC 493
|||||| || | || ||| || | || ||| ||| ||| || ||||| |||||
Sbjct 435 ATGGAGGGTCCGGTCCGAGAAATCGGGAGAT--TGT-TCCAACGATGAGATCTTTGACGC 491
Query 494 GGTCGTGGTTTGCAATGGTCACTT-CACTGAGCC--TCGTCTTGCTCATATTCCTGGGAT 550
|| |||||||||| ||| || || || || || |||| || ||||||||||| ||
Sbjct 492 CGTTGTGGTTTGCAGTGGACA-TTATACAGAACCAAACGTCGTG--CATATTCCTGGTAT 548
Query 551 AGAGTCATGGCCAGGAAAGCAGATCCATAGCCACAATTATC-GAATTCCAGATCCATTC- 608
| | || ||||||||||||||||||||||||||||| || | || |||| | |||||||
Sbjct 549 AAATTCGTGGCCAGGAAAGCAGATCCATAGCCACAACTA-CAGAGTTCCTGGTCCATTCG 607
Query 609 AAAGATGAGGTGGTGATAGTTATAGGAAGTCAAGCTAGTGGAAAC-GACATTAGTACAGA 667
||| | ||||||||| |||| || |||| | || || || | || ||||||| ||
Sbjct 608 AAA-ACGAGGTGGTGGTAGTGATCGGAAATTTTGCAAGCGGTG-CTGATATTAGTAGGGA 665
Query 668 CATAGCAACCAT-T-GCAAAAGAAGTCCATATCT-CGTCTAAAATG-GTTGCATCCGATT 723
|||||| | | | || |||||||| ||||| | |||||| | | || | ||| |||
Sbjct 666 CATAGCT-C-AGGTCGCGAAAGAAGTTCATAT-TGCGTCTAGAGCGAGT-GAATCTGATA 721
Query 724 CATATG----GCT----GT---T-ACGACAACCTACGGATTCAC-CCTACGATATATCGC 770
|||| ||| || | | |||||||| ||||||| || | |||| | | |
Sbjct 722 CATACAAAAAGCTTCCTGTGCCTCATAACAACCTATGGATTCATTCCGA-GATAGA-CAC 779
Query 771 -GCCCGCGAGGATGGTTCCGTGGTATTCCGAAACGGGAAAGTGGTTTTTGCTGAT-GCTA 828
|||| || ||||| || | || || ||||||||| ||||| | ||| ||| || |
Sbjct 780 CGCCCATGAAGATGGGTCAATTGTTTTTAAAAACGGGAAGGTGGTATATGCAGATAGC-A 838
Query 829 TAGT-TCATTGCACTGGTTACAAGTATCATTTCCCGTTTCTTAAAACCAGTGGTTATGTG 887
| || | |||||||||| ||||||||||| ||||| |||||| |||||| ||| ||| ||
Sbjct 839 TTGTAT-ATTGCACTGGATACAAGTATCACTTCCCATTTCTTGAAACCAATGGCTATATG 897
Query 888 A-C-TGTCGAGGATAACCGTGTTGGA-CCTCTCTACAAACATGTTTTCCCACCCGCACTT 944
| | | | || || ||||| ||| | ||||| ||||| |||||||| |||||||| |||
Sbjct 898 AGCAT-T-GATGAAAACCGCATTG-ATCCTCTATACAAGCATGTTTTTCCACCCGCGCTT 954
Query 945 GCGCCTGGGATCTCCTTT-ATTGGTTTACCTTTC-ATGGGGC-TCCAGTTCT-TTATGTT 1000
|| ||||| | || ||| ||||||||||| | ||||| | | ||||| | |||||||
Sbjct 955 GCCCCTGGTCTTTC-TTTCATTGGTTTACCAG-CGATGGG-CATACAGTT-TGTTATGTT 1010
Query 1001 TGAAATCCAGAGCAAGTGGGTTGCTTCGGTTTTGTCGGGTCGAGTTAAGCTTCCAGCAGA 1060
||||||||| ||||| ||||| || | || ||| | || || ||||| ||||| || |
Sbjct 1011 TGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGGCAGGACGGGTTAAACTTCCCTCACA 1070
Query 1061 GGATAAGATGATGGAAGA 1078
||||||||||| |||||
Sbjct 1071 AGATAAGATGATAGAAGA 1088
> Ahg475092 jgi|Araly1|475092|fgenesh2_kg.2__222__AT1G62560.1
Length=1414
Score = 217 bits (117), Expect = 3e-55
Identities = 782/1085 (72%), Gaps = 117/1085 (11%)
Strand=Plus/Plus
Query 33 CACGTGGCCGTGATCGGA-CTAGGAGCCGCCGGCCTCGTGGCGGT-TCGAGAGCTTCGTC 90
|||||||| ||||||||| | ||||| ||||| || | | || | | ||||| ||||
Sbjct 34 CACGTGGCAGTGATCGGAGC-CGGAGCAGCCGGTATCATAAC-GTCTAGGGAGCTCCGTC 91
Query 91 GTGAAGGTCACACCGTCATCG-GTTTCGAGCGTGAGAAACATGTTGGTGGACTCTGGGTG 149
|||||||||||| ||| | | || | || || |||||||| || ||||| ||||||||
Sbjct 92 GTGAAGGTCACAGTGTCGTTGTGTAT-GAACGGGAGAAACAAGTGGGTGGTCTCTGGGTT 150
Query 150 TACACTGATC-GAGT-CGATTCAGACTCGGTTAGCGTTGACCCGGA-TCGAACCATCGTA 206
||||| | | | | |||||| ||| | ||||| ||||||| || ||| ||| ||
Sbjct 151 TACAC--ACCTAAATCCGATTCCGACCCACTTAGCCTTGACCC-GACCCGATCCAAAGTC 207
Query 207 CACTCGAGCATCTACCAGTCCCTCCGCACCAATCTACCACGAGAG--TGTATGGGT-TAC 263
||||| ||||||||| |||| ||||| |||||| | || |||||| |||||||| | |
Sbjct 208 CACTCTAGCATCTACGAGTCTCTCCGAACCAATGT-CC-CGAGAGAAAGTATGGGTGT-C 264
Query 264 AGTGACTTTCCATTCGTTACC-CGATCCAG-TGACG-G-C----GACCCGAGACGGTACC 315
|| ||||| || || || || || | | ||||| | | |||||||||||||| |
Sbjct 265 AGGGACTTCCCGTT-TTTGCCACG-TTTTGATGACGAGTCAAGAGACCCGAGACGGTATC 322
Query 316 CCGATCATAGGGAAG-TCTTGATGTACCTTCAAGA-TTTCGCCAAAGAGTTCAAGATCGA 373
| |||| ||||||| ||||| ||| ||||||| ||| || | |||||| || || ||
Sbjct 323 CAAATCACAGGGAAGTTCTTG-CGTATATTCAAGACTTT-GCTAGAGAGTTTAAAATAGA 380
Query 374 AGATATGATCCGATTTGAGACAGAGGTTTTGTGTGT-GGAGCCGTCGCCGGAGAATAACC 432
|| |||||||| || ||||| |||| || || | || | | || | | | |
Sbjct 381 GGAGATGATCCGGTTCGAGACCGAGG---TG-GT-TCGG-GTTG-AACC-G-G-TTGATG 430
Query 433 GTAAATGGAGAGTTCAGTTTAAGAGCT-CAAATGGTGTCTCCGG-CGAAGAAATCT-TCG 489
| |||||||| || |||| || | | | ||| ||| || || || |||| | |
Sbjct 431 GGAAATGGAGGGTCCAGTCCAAAAAATCCGGCGGGT-TCT-TGGAAGATGAGATCTAT-G 487
Query 490 ACGCGGTCGTGGTTTGCAATGGTCACTT-CACTGAGCCTCGTC-TTGCTCATATTCCTGG 547
|||| ||||||||||||||||| || || ||||| || | || |||||||||||||
Sbjct 488 ACGCCGTCGTGGTTTGCAATGGACA-TTATACTGAACC-AAACATTACTCATATTCCTGG 545
Query 548 GA-TAGAGTCATGGCCAGGAAAGCAGATCCATAGCCACAATTATC-GAATTCCAGATCCA 605
| || | || ||||||||||||||||||||||||||||| || | || |||| ||||||
Sbjct 546 TATTA-AATCGTGGCCAGGAAAGCAGATCCATAGCCACAACTA-CAGAGTTCCTGATCCA 603
Query 606 TTC-AAAGATGAGGTGGTGATAGTTATAGGAAGTCAAGCTAGTGGAAACGACATTAGTAC 664
||| ||| | ||||| ||| | || || |||| | || || || ||| |||||||
Sbjct 604 TTCGAAA-ACGAGGTAGTGGTGGTGATTGGAAATTTTGCAAGCGGTGCCGATATTAGTAG 662
Query 665 AGACATAGC-AACCATTGCAAAAGAAGTCCATATCT-CGTCTA-A--AATGGTTGCATCC 719
|||||||| || | || ||||||||||| || | |||||| | || || | | ||
Sbjct 663 GGACATAGCTAAGG-TCGCGAAAGAAGTCCACAT-TGCGTCTAGAGCAA-GG--GAACCC 717
Query 720 GATTCATATG-GC---T----GTTAC---GA-CAACCTACGGATTCACCCTACGATATAT 767
| |||| | | | ||| | || ||| ||| |||| || | ||| | ||
Sbjct 718 CACACATACGAGAAGATTTCCGTTCCCCAGAACAATCTATGGATGCATTC--CGA-A-AT 773
Query 768 CG-CGC--CCGC--GAGGATGGTTCCG-TGGTATTCCGAAACGGGAAAGTGGTTTTTGCT 821
|| | | || | |||||||| || | | || ||| ||||||||||||||| || |||
Sbjct 774 CGACACAACC-CATGAGGATGGGTC-GATTGTTTTCAAAAACGGGAAAGTGGTATTCGCT 831
Query 822 GAT-GCTATAGT-TCATTGCACTGGTTACAAGTATCA-TTTCCCGTTTCTTAAAACCAGT 878
||| || || || | ||||||| || ||||| ||| | ||||| |||||| |||||| |
Sbjct 832 GATAGC-ATTGTGT-ATTGCACCGGGTACAAATATAACTTTCCA-TTTCTTGAAACCAAT 888
Query 879 GGTTATGTGA-C-TGTCGAGGATAACCGTGTTGGACCTCTCTACAAACATGT-TTTCCCA 935
|| ||| || | | | || || || || |||| |||||| ||||| ||||| ||||| |
Sbjct 889 GGCTATTTGCGCAT-T-GATGAAAAACGCGTTGAACCTCTATACAAGCATGTCTTTCC-A 945
Query 936 CCCGCACTTGCGCCTGGGA-TCTCCTTTATT-GGTTTACCTTTCA-TGGGGCTCCAGT-T 991
||||| ||||| || || | | || ||| | ||| |||| || ||||| | ||| |
Sbjct 946 CCCGCGCTTGCCCCCGG-ACTTTC-TTTCGTAGGTGTACCAG-CAATGGGGAT--AGTAT 1000
Query 992 CT-TTATGTTTGAAATCCAGAGCAAGTGGGTTGCTTCGGTTTTGTCGGGTCGAGTTA-AG 1049
| |||||||||||||||| ||||| ||||| || | || ||||| || ||||||| |
Sbjct 1001 ATGTTATGTTTGAAATCCAAAGCAAATGGGTGGCAGCAGTCTTGTCAGGACGAGTTACA- 1059
Query 1050 CTTCC 1054
|||||
Sbjct 1060 CTTCC 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5