BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12170.1 Length=1095 Score E Sequences producing significant alignments: (Bits) Value Ahg471367 jgi|Araly1|471367|fgenesh2_kg.1__1321__AT1G12170.1 771 0.0 > Ahg471367 jgi|Araly1|471367|fgenesh2_kg.1__1321__AT1G12170.1 Length=1041 Score = 771 bits (417), Expect = 0.0 Identities = 541/600 (90%), Gaps = 12/600 (2%) Strand=Plus/Plus Query 499 CCATTATACCGAAGTGTTGAAATCTACACGTTCGAAACTAATGGGTGGAAGAGTATGAAT 558 ||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||||| ||| Sbjct 451 CCAGTATACCGAAGAGTTGATATCTACAAGTTAGAAACTAATGTGTGGAAGAGTATTAAT 510 Query 559 ACCTTTTCTGAAGAAGGAGAGATCCGCCCAT-TAAGTGATGTGTCTTTGAATGGAAATTT 617 ||||||||| ||| || |||||||||| ||| | |||||||||||||||||||||||||| Sbjct 511 ACCTTTTCTAAAGCAGTAGAGATCCGCACATGT-AGTGATGTGTCTTTGAATGGAAATTT 569 Query 618 ATATTGGGTTGTTAGCAATGGCGAGACACATGAGTGTTTTATCGAAAGTTTCGATTTTTC 677 ||||||||| ||| |||| ||| ||| |||||| |||||||||||||||||||||||| Sbjct 570 GTATTGGGTTCTTACCAATCACGATACAGATGAGTATTTTATCGAAAGTTTCGATTTTTC 629 Query 678 GAAAGAGATATATAAATGTTTTTGCACTCTACCGTGGAATTATAATTCTTTC-CATGTTC 736 ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||| | | ||| Sbjct 630 GAAAGAGATATATAAATTTTTTTGCGCTCTACCGTGGGATTATAAATCTTTTGCTT-TTC 688 Query 737 CAGTCCTCTCAACTTTTAGGAAAGATCGACTTTCAGTGTTAAAAAGAAAGAGAATGGCCG 796 |||||||||||||||| |||||| |||||||||||||||||||||||| || ||| Sbjct 689 CAGTCCTCTCAACTTTCAGGAAAAATCGACTTTCAGTGTTAAAAAGAATGA------CCG 742 Query 797 AAACAAATAATATTGAGATTTGGGTGACAAAAAACAAGATTAATGACGATGGGGAGCCTG 856 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 743 CAACAAATAATACTGAGATTTGGGTGACAAAAGACAAGATTAATGACGATGGGGAGCATG 802 Query 857 TAGCGTGGATAAAGTTCATGACAGTTTCAATAGCTATTTCTAGTAACTCTTC-TCCAAGT 915 ||||||||||||||||||||||||||||| || ||||||||||| ||||| | ||||||| Sbjct 803 TAGCGTGGATAAAGTTCATGACAGTTTCAGTACCTATTTCTAGTTACTCT-CGTCCAAGT 861 Query 916 TTCTTCATCGATAATGTCTACCAAAAGAGTTTTATCATGTGTTGTGAGGATGAAAATAAC 975 | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 862 TACTTCATCGATAATGTCTACCAAAAGAGCCTTATCATGTGTTGTGAGGATGAAAATAGC 921 Query 976 AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTT 1035 ||||||||| |||||||||||||||| |||||| ||||||||| ||||||| |||||||| Sbjct 922 AAGCTTTGCATTTATATTGTGAGGGGTAATGCGCTGACGAAGACTCAAATTATAGGTGTT 981 Query 1036 GATGCTAAAAATTATATTAATCATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1095 ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 982 GATGCTAAACATTTTATTAATTATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1041 Score = 590 bits (319), Expect = 9e-168 Identities = 363/384 (95%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 1 ATGATGCATGTAATCCTTCCATGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGCATGTAATCCTTCCGTGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60 Query 61 CTATCTCTAACCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTATCTTTAATCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120 Query 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAGTTCCTCTTATGGACCGATTCC 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAATTCCTCTTATGGACCGATTCC 180 Query 181 AAGATGTATTCAGTAAGCGTCAATCTCAACGATGATCAAAAGATAGATATGCGTGAGCTA 240 ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| || Sbjct 181 AAGATGTATTCGGTAAGCGTCAATCTCAACAATGATCCAAAGATAGATATGCGTGAGTTA 240 Query 241 CCCTTAGATATTCCTTATTTGAATAATTTTATGCGTACCTA-CTTTACTCCTTGTGACGG 299 || ||||||||| |||||||||| |||| || ||||||| | ||||||||||||||| || Sbjct 241 CCATTAGATATTTCTTATTTGAACAATTGTACGCGTACC-AGCTTTACTCCTTGTGATGG 299 Query 300 CTTATTGTTTTGTGACTCGTGGTCATGGAGAAAG-AAAGCTGCGATTTGGAACCCGTGGT 358 |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 300 CTTATTGTTTTGTGACTCGTGGTCATGG-GAAAATAAAGCTGCGGTTTGGAACCCGTGGT 358 Query 359 TGAGACAAACTAAATGGATAGAGT 382 |||||||||||||||||||| ||| Sbjct 359 TGAGACAAACTAAATGGATAAAGT 382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40791521190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5