BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12170.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471367 jgi|Araly1|471367|fgenesh2_kg.1__1321__AT1G12170.1 771 0.0
> Ahg471367 jgi|Araly1|471367|fgenesh2_kg.1__1321__AT1G12170.1
Length=1041
Score = 771 bits (417), Expect = 0.0
Identities = 541/600 (90%), Gaps = 12/600 (2%)
Strand=Plus/Plus
Query 499 CCATTATACCGAAGTGTTGAAATCTACACGTTCGAAACTAATGGGTGGAAGAGTATGAAT 558
||| |||||||||| ||||| ||||||| ||| |||||||||| |||||||||||| |||
Sbjct 451 CCAGTATACCGAAGAGTTGATATCTACAAGTTAGAAACTAATGTGTGGAAGAGTATTAAT 510
Query 559 ACCTTTTCTGAAGAAGGAGAGATCCGCCCAT-TAAGTGATGTGTCTTTGAATGGAAATTT 617
||||||||| ||| || |||||||||| ||| | ||||||||||||||||||||||||||
Sbjct 511 ACCTTTTCTAAAGCAGTAGAGATCCGCACATGT-AGTGATGTGTCTTTGAATGGAAATTT 569
Query 618 ATATTGGGTTGTTAGCAATGGCGAGACACATGAGTGTTTTATCGAAAGTTTCGATTTTTC 677
||||||||| ||| |||| ||| ||| |||||| ||||||||||||||||||||||||
Sbjct 570 GTATTGGGTTCTTACCAATCACGATACAGATGAGTATTTTATCGAAAGTTTCGATTTTTC 629
Query 678 GAAAGAGATATATAAATGTTTTTGCACTCTACCGTGGAATTATAATTCTTTC-CATGTTC 736
||||||||||||||||| ||||||| ||||||||||| ||||||| ||||| | | |||
Sbjct 630 GAAAGAGATATATAAATTTTTTTGCGCTCTACCGTGGGATTATAAATCTTTTGCTT-TTC 688
Query 737 CAGTCCTCTCAACTTTTAGGAAAGATCGACTTTCAGTGTTAAAAAGAAAGAGAATGGCCG 796
|||||||||||||||| |||||| |||||||||||||||||||||||| || |||
Sbjct 689 CAGTCCTCTCAACTTTCAGGAAAAATCGACTTTCAGTGTTAAAAAGAATGA------CCG 742
Query 797 AAACAAATAATATTGAGATTTGGGTGACAAAAAACAAGATTAATGACGATGGGGAGCCTG 856
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 743 CAACAAATAATACTGAGATTTGGGTGACAAAAGACAAGATTAATGACGATGGGGAGCATG 802
Query 857 TAGCGTGGATAAAGTTCATGACAGTTTCAATAGCTATTTCTAGTAACTCTTC-TCCAAGT 915
||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||||||
Sbjct 803 TAGCGTGGATAAAGTTCATGACAGTTTCAGTACCTATTTCTAGTTACTCT-CGTCCAAGT 861
Query 916 TTCTTCATCGATAATGTCTACCAAAAGAGTTTTATCATGTGTTGTGAGGATGAAAATAAC 975
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 862 TACTTCATCGATAATGTCTACCAAAAGAGCCTTATCATGTGTTGTGAGGATGAAAATAGC 921
Query 976 AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTT 1035
||||||||| |||||||||||||||| |||||| ||||||||| ||||||| ||||||||
Sbjct 922 AAGCTTTGCATTTATATTGTGAGGGGTAATGCGCTGACGAAGACTCAAATTATAGGTGTT 981
Query 1036 GATGCTAAAAATTATATTAATCATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1095
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 982 GATGCTAAACATTTTATTAATTATTGTTCCTATGTTCCCAGTTTGATCCCAGTTCCTTGA 1041
Score = 590 bits (319), Expect = 9e-168
Identities = 363/384 (95%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 1 ATGATGCATGTAATCCTTCCATGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCATGTAATCCTTCCGTGGGAATTGGTAGAAGAGATACTCTATCGTGTTCCGCCT 60
Query 61 CTATCTCTAACCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTATCTTTAATCCGATTCAAAATCGTTTGCAAACAATGGAACACACTTTTCAAAAGCAAA 120
Query 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAGTTCCTCTTATGGACCGATTCC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TCGTTCGTCAACAACCACTTGGTTCGTGTCCGTCCTCAATTCCTCTTATGGACCGATTCC 180
Query 181 AAGATGTATTCAGTAAGCGTCAATCTCAACGATGATCAAAAGATAGATATGCGTGAGCTA 240
||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 181 AAGATGTATTCGGTAAGCGTCAATCTCAACAATGATCCAAAGATAGATATGCGTGAGTTA 240
Query 241 CCCTTAGATATTCCTTATTTGAATAATTTTATGCGTACCTA-CTTTACTCCTTGTGACGG 299
|| ||||||||| |||||||||| |||| || ||||||| | ||||||||||||||| ||
Sbjct 241 CCATTAGATATTTCTTATTTGAACAATTGTACGCGTACC-AGCTTTACTCCTTGTGATGG 299
Query 300 CTTATTGTTTTGTGACTCGTGGTCATGGAGAAAG-AAAGCTGCGATTTGGAACCCGTGGT 358
|||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 300 CTTATTGTTTTGTGACTCGTGGTCATGG-GAAAATAAAGCTGCGGTTTGGAACCCGTGGT 358
Query 359 TGAGACAAACTAAATGGATAGAGT 382
|||||||||||||||||||| |||
Sbjct 359 TGAGACAAACTAAATGGATAAAGT 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5