BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12180.1

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910982 jgi|Araly1|910982|Al_scaffold_0001_1236                    327    4e-89


> Ahg910982 jgi|Araly1|910982|Al_scaffold_0001_1236
Length=354

 Score =  327 bits (177),  Expect = 4e-89
 Identities = 306/366 (84%), Gaps = 18/366 (5%)
 Strand=Plus/Plus

Query  34   ATGAGTGGATCCTCCTCGAGGGAAGCCACCTCCGCCGCCGGTGATGGAAACTACAAACTG  93
            ||||||| ||||||||| || ||| | |||||||||||||||||| |||||| |||| ||
Sbjct  1    ATGAGTGCATCCTCCTCCAGAGAATCTACCTCCGCCGCCGGTGATAGAAACTTCAAAGTG  60

Query  94   GAGATAAAAGAATACGGTGGAGGTAAAGGACCAGTCCGGTGGTTTTTTAAGGAGGACTCG  153
            ||||||||||||||||||||||||||||||||||||||||  |||||| | ||||| |||
Sbjct  61   GAGATAAAAGAATACGGTGGAGGTAAAGGACCAGTCCGGTATTTTTTTGATGAGGATTCG  120

Query  154  TGCGTTGCAATGATAGATGTTCCGGGTTGTTCA-GTAGCACCCAGCAGTTACAGC--TTG  210
            ||| |||||| | |||||||||||||||||||| | |    ||||  ||| || |  |||
Sbjct  121  TGCATTGCAAGGGTAGATGTTCCGGGTTGTTCAAG-ATTTTCCAGT-GTT-CACCCATTG  177

Query  211  GAGAAAACCCACGTAGGGTTTCAAACAGAAGAAGTAGACCAGAACAACCACTCCCTACCC  270
            ||||||||| |||||||||||| |||||||||||||||| |||||||| || ||||    
Sbjct  178  GAGAAAACCAACGTAGGGTTTCGAACAGAAGAAGTAGACGAGAACAACAAC-CCCT----  232

Query  271  GTACGCACATACATC-GGCTTCGTCAAGTTCCCAGCGGTTTACGATTCGAAGCATGCTAA  329
             ||||||||||| || |||||||||||||||||| | ||||||||| ||||| ||||| |
Sbjct  233  -TACGCACATAC-TCCGGCTTCGTCAAGTTCCCAACTGTTTACGATCCGAAGAATGCTGA  290

Query  330  GATTTG-GGTTG-TCAATGGCGTACTCTGGATCACCGTTACTAAGCACCAAGGCCGCCAA  387
             | ||  ||||| | | |||||| |||||| |||||||| ||| | | |||  |||||||
Sbjct  291  -ACTTAAGGTTGAT-AGTGGCGTGCTCTGGGTCACCGTTCCTAGGAAACAACACCGCCAA  348

Query  388  GGTTAA  393
            ||||||
Sbjct  349  GGTTAA  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22416275196


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5