BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12190.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471368 jgi|Araly1|471368|fgenesh2_kg.1__1322__AT1G12190.1 1543 0.0
> Ahg471368 jgi|Araly1|471368|fgenesh2_kg.1__1322__AT1G12190.1
Length=1113
Score = 1543 bits (835), Expect = 0.0
Identities = 1022/1112 (92%), Gaps = 14/1112 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTGTGTGAAAT-TTCCGTGGGAATTGATGGAAGAGATACTCTATCGTGTTCCATC 59
||||| ||| || ||| ||||| |||||||| ||||||| |||||||| |||||||||||
Sbjct 1 ATGGCATGTATG-AATATTCCGGGGGAATTGGTGGAAGATATACTCTACCGTGTTCCATC 59
Query 60 TCTATCTCTTTCCCGATTCAAAACTGTTTCCAAAGAATGGAACACACTTCTCAACGATAA 119
|| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 60 TCCATCTATTTCCCGATTCAAAACCGTTTCCAAGGAATGGAACACACTTCTCAACGATAA 119
Query 120 GACGTTCATCAAGAAACACTTGGCTCTCGTCCGTCCTCAATTCCGTTTATGGACCAATTC 179
| |||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||
Sbjct 120 GGCGTTCATCAAGAAACACTTGACTCTCATCCGTCCTCAGTTCCTTTTATGGACCAATTC 179
Query 180 CAAGGTTTATTCGGTTGATGTCAGTCTAAACGATGATCCAAATATAGAGCTGCGTGAATT 239
||||||||||||||| | ||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 180 CAAGGTTTATTCGGTAGGTGTGAGTCTTAACGATGATCCAAAAATAGAGCTGCGTGAGTT 239
Query 240 GCCCTTAGATATTCCTTATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299
|| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTCTTAGATATACCTGATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGA 299
Query 300 CTTATTGTTTTGTGCCTCATGGTGGAG---CAATAAAGCTGTTGTTTGGAACCCGTCGTT 356
||||||||||||||||||||||||| | ||||||||| | ||||||||||||||| ||
Sbjct 300 CTTATTGTTTTGTGCCTCATGGTGGTGGAACAATAAAGCCGCTGTTTGGAACCCGTCATT 359
Query 357 GAGACAAACTAGATTGATTAAATCGGGGGAAGAACATTTCCGGTTTGGTGGCATAGGATA 416
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 360 GAGACAAACTAGATTGATCAAGTCGGGGGAAGAACATTTCAGGTTTGGTGGCATAGGATA 419
Query 417 TGATAGTGGTAGACCCGGAAAAGGTTACCATATATTTGGGCATAGTCATAGTCGGCTAAG 476
|||| |||||||| ||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 420 CGATAATGGTAGACACGGAAAAGGGTACCATATATTTGGACATAGTCATAGTTGGCTAAG 479
Query 477 TGTTAATGGAAACACCTCTAAGTTTATTAAAAGATTTTATATCACCAAGTTTGAAAGTAA 536
||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||| ||
Sbjct 480 TGTTAATGGTAACACCTCTAAGTTTAATAAAAGATTTTCTATCTCCAAGTTTGAAAGCAA 539
Query 537 TGCGTGGAAATGTATTGATGATGTTTCCCTTGGAGAGAATTCCATAGGAGGAGATTCATT 596
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TGCGTGGAAATGTATTAATGATGTTTCCGATGGAGAGAATTCCATAGGAGGAGATTCATT 599
Query 597 AGATAATAATAATGTATCTTTGAATGGAAATTTGTATTGGACTACTAATAGCTATGATAC 656
||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 600 AGACAATAAT---GTATCTTTGAATGGAAATTTGTATTGGACTACTTATAGCTATGAGAC 656
Query 657 TGATGAATATCTCATCCAAAGTTTCGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 TGATGAATATCTCATCCGAAGTTTTGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGT 716
Query 717 TCTACCAAGGAAGAAGGATTCTTCTGATATTCCAGTCCTCTCAGTTTTTAGGGGAGATCG 776
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 TCTACCGTGGAAGAAGGATTCTTCTGATATTCCAATCCTCTCAGTTTTTAGGGGAGATCG 776
Query 777 ACTTTCGGTATTACATAAATTTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTTTCAGTATTAAATAAATCTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAA 836
Query 837 CAAGATTAATGAG-A-GTGTAA-AAGCTGTGGTGTGGATGATGTTCATGACAGTTTCAAT 893
||||||||||||| | ||| || || | ||||||||| |||||||||||| ||||||||
Sbjct 837 CAAGATTAATGAGGATGTG-AAGAAT-T-TGGTGTGGAAGATGTTCATGACTGTTTCAAT 893
Query 894 ACCTATATATAAGGACTCTAAGCCAAGTTACTTTATCAATGATATCTACGAAAAGAGACT 953
||| || || |||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 894 ACCGATTTACAAGGGCTCTAATCCAAGTTACTTCATCAATGATATCTACGAAAAGAGACT 953
Query 954 CGTCATGTGTTGCAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGTGAAGGACCAAGC 1013
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 954 CGTCATGTTTTGTAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGCGAAGGGCCATGC 1013
Query 1014 AAGGAAAAAGATTCAACTAGGTTTTCATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1014 AAGGAAAAAGATTCAAATAGGTTTTGATGTTAGTGAGTTTAGTCATTGTTTCTATGATCC 1073
Query 1074 CAGCTTGATTCCTATTCCTTCAGAGACTTCAG 1105
|| ||| |||||||||||||||||| |||||
Sbjct 1074 CAATTTGTTTCCTATTCCTTCAGAGAGTTCAG 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5