BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12244.1
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471373 jgi|Araly1|471373|fgenesh2_kg.1__1327__AT1G12244.1 1138 0.0
> Ahg471373 jgi|Araly1|471373|fgenesh2_kg.1__1327__AT1G12244.1
Length=832
Score = 1138 bits (616), Expect = 0.0
Identities = 690/726 (95%), Gaps = 3/726 (0%)
Strand=Plus/Plus
Query 117 ATGTGTTCTCTTCACTCTTTTTCTTCCGTAGCAATTTCATTCAGAACTCAAAAGTACGTA 176
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTGTTCTCTTCACTCTCTTTCTTCCGTAGCAATTTCATTCAGAACCCAAAAGTACGTA 60
Query 177 AATACCTCTCTCGTTCATCGCTTATCTCCTATAGGATATCGTAATTATCCTCTACCG-T- 234
|||||| ||||||||| |||||||||| ||||||||| |||||||||||||||| || |
Sbjct 61 AATACCCCTCTCGTTCCTCGCTTATCTTCTATAGGATCTCGTAATTATCCTCTAGCGTTG 120
Query 235 -GGGCAGTGACGTCAATTGACGAAATCCCTCCTAATGCTGTTCGCCGGAAAATAGACCGG 293
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AGGGCAGCGACGTCAATTGATGAAATCCCTCCTAATGCCGTTCGCCGGAAAATAGACCGG 180
Query 294 AATTGGAGAGGTGGGTTCAGTCTCGGCGTAGATTTAGGTTTATCTCGAACCGGAATCGCT 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACTGGAGAGGTGGGTTCAGTCTCGGCGTAGATTTAGGTTTATCTCGAACCGGAATCGCT 240
Query 354 ATTAGTAAAGGCTACACCGTTAAACCTCTCACGGTTTTGAAATCGAGAGGGCAAAAACTC 413
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 241 ATTAGTAAAGGCTACACCGTTAAACCTCTCACGGTTTTGAAATCTAGAGGACAAAAGCTC 300
Query 414 GAGACCAGGCTTTTAGAAATTGCTGAAGAAGAAGAGGCTGATGAATTTATAATTGGGTTG 473
||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 301 GAGACCAGGCTATTAGAAATTGCTGAAGAAGAGGAGGTTGATGAATTCATAATTGGGTTG 360
Query 474 CCGAGATCTTCTGATGGGAAAGAGACGATTCAATCGAACAAAATTCGTTCTGTTGCTGGA 533
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 361 CCGAGATCTTCTGACGGGAAAGAGACGATTCAATCGAACAAAATCCGATCTGTTGCTGGA 420
Query 534 CGGCTCGCTATTCAAGCCGCCGAGAGGGGTTGGAGAGTTTATGTATTTGATGAACATGGA 593
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CGGCTCGCTGTTCAAGCCGCCGAGAGGGGTTGGAGGGTTTATGTATTTGATGAACATGGA 480
Query 594 ACAACGTCAGAAGCTTCAGATAGAATGATTGTAATGGGACTTAGCAAGAGTGAAAGACAG 653
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ACAACATCAGAAGCTTCAGACAGAATGATTGTAATGGGACTTAGTAAGAGTGAAAGACAG 540
Query 654 AACAGATCAGATGCATATGCTGCTGTGATATTGTTGGAGAGGTATTTCTCTACACAAGGT 713
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACAGATCAGATGCTTACGCTGCTGTGATATTGTTGGAGAGGTATTTCTCTACACAAGGT 600
Query 714 TTAGGAATTGAGATTATACTTCCCAAGAGTTTAGAGCTTCAAGCAAAGATCAAGAACGGT 773
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TTAGGAGTTGAGATTATACTTCCCAAGAGTTTAGAGCTTCAAGCGAAGATCAAGAACGGT 660
Query 774 GCACCTGTAGACCCCGACTTCAATCCGGAAAACCTCGAAGAGTATTACACATTCTAAAGT 833
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 661 GCACCTGTTGACCCCGACTTTAATCCGGAAAACCTCCAAGAGTATTACACATTCTAAAGT 720
Query 834 AGTTTG 839
||||||
Sbjct 721 AGTTTG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36521754486
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5