BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12250.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471375 jgi|Araly1|471375|fgenesh2_kg.1__1329__AT1G12250.1 1395 0.0
> Ahg471375 jgi|Araly1|471375|fgenesh2_kg.1__1329__AT1G12250.1
Length=988
Score = 1395 bits (755), Expect = 0.0
Identities = 837/878 (95%), Gaps = 0/878 (0%)
Strand=Plus/Plus
Query 1 GCAAAGTTTTAGACTTTTAACAATGGCTTTCTCTTCTCTATCTCCTCTACCTATGAAGTC 60
|||||||| ||||| || |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 GCAAAGTTCTAGACCTTAAACAATGGCTTTTTCTTCTCTATCTCCTCTACCCATGAAGTC 60
Query 61 ACTTGACATTTCGAGATCCTCATCTTCTGTCTCAAGATCTCCTTACCATTTTCAGAGATA 120
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 61 ACTTGACATTTCAAGATCCTCATCTTCTGTATCAAGATCTCCGTACCATTTTCAAAGATA 120
Query 121 CCTATTGAGACGTCTACAGCTAAGTTCCCGTTCAAACTTAGAAATCAAAGATTCATCAAA 180
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CCCATTGAGACGTCTACAGCTAAGTTCCCGTTCAAACTCAGAAATCAAAGATTCATCAAA 180
Query 181 CACTAGGGAAGGTTGTTGTTCCAGCGCTGAGTCAAATACATGGAAGAGGATTTTGTCTGC 240
| |||||||||||||||||||||| || || ||||| || ||||||||||| || || ||
Sbjct 181 CGCTAGGGAAGGTTGTTGTTCCAGAGCAGAATCAAACACGTGGAAGAGGATCTTATCCGC 240
Query 241 AGCAATGGCGGCGGCTGTTATAGCCTCGAGCTCCGGCGTTCCGGCCATGGCAGAGCTTAA 300
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCAATGGCGGCTGCGGTTATAGCCTCGAGCTCCGGCGTTCCGGCCATGGCAGAGCTTAA 300
Query 301 CAGGTTCGAGGCCGATACACGTGGCGAGTTTGGGATTGGCTCGGCTGCTCAGTACGGTTC 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CAGGTTCGAGGCCGATACACGTGGCGAGTTCGGGATTGGCTCGGCTGCTCAGTACGGTTC 360
Query 361 TGCTGATCTCAGCAAAACAGTTCACTCCAATGAAAATTTCAGAAGAGCCAACTTTACTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCTGATCTCAGCAAAACAGTTCACTCCAATGAAAATTTCAGAAGAGCCAACTTTACTTC 420
Query 421 TGCCGACATGAGAGAGTCTGATTTCAGCGGTTCGACCTTCAATGGCGCATATCTTGAGAA 480
||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 421 TGCAGACATGAGGGAGTCTGATTTCAGCGGTTCGACCTTCAATGGTGCCTATCTTGAGAA 480
Query 481 AGCAGTTGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGCGATACATTGATGGACCG 540
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 AGCAGTTGCCTACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGGACCG 540
Query 541 CATGGTGCTAAATGAGGCGAATCTGACAAATGCAGTGCTGGTCCGATCGGTTCTAACCAG 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 541 CATGGTGCTAAATGAGGCGAATCTGACAAATGCGGTGCTGGTCCGATCGGTTCTAACCCG 600
Query 601 AAGTGACCTCGGTGGTGCCAAAATCGAAGGTGCTGATTTTAGTGACGCTGTGATTGATCT 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 AAGTGACCTCGGTGGTGCCAAAATCGAAGGTGCCGATTTTAGTGACGCTGTGATTGATCT 660
Query 661 TCTTCAGAAACAGGCTCTGTGTAAATACGCAACCGGGACAAACCCATTGACCGGAGTGGA 720
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TCTTCAAAAACAGGCTCTGTGTAAATACGCAAACGGGACAAACCCATTGACCGGAGTGGA 720
Query 721 CACGAGGAAGAGTCTTGGCTGTGGAAATAGCCGGAGAAACGCATATGGTTCGCCTTCTTC 780
||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 721 CACGAGGAAGAGTCTTGGCTGCGGAAATAGCCGGAGAAATGCATATGGCTCTCCTTCTTC 780
Query 781 TCCTCTTCTCAGTGCACCGCCTCAACGTCTGCTAGGCCGTGATGGATTCTGCGATGAAAA 840
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 TCCTCTTCTCAGTGCACCGCCTCAACGTCTGCTCGGCCGTGATGGATTCTGCGATGAAAA 840
Query 841 GACCGGTCTCTGTGATGTCAAGTAGTTTCAAGATGTTA 878
||||||||||||||||| |||||||||| |||||||||
Sbjct 841 GACCGGTCTCTGTGATGCCAAGTAGTTTAAAGATGTTA 878
Score = 165 bits (89), Expect = 6e-40
Identities = 103/110 (94%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 923 ATATGTTGTGAAACACTAATCATGTGATGTATGTTTATAGGAGTATTGAATTGTAAATGA 982
|||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 879 ATATGTTGTGCGACAGTAATCATGTAATGTATGTTTATAGGAGTATTGAATTGTAAATGA 938
Query 983 CTGGagaaagaaaaagaacaaaaagataacactgaaaaagaGGAGATAAT 1032
|||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 939 CTGGAGAATGAAAAAGAACAAAAAGATAACACTGAAAAAAAAGAGATAAT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5