BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12260.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471376 jgi|Araly1|471376|fgenesh2_kg.1__1330__AT1G12260.1 2342 0.0
Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 706 0.0
> Ahg471376 jgi|Araly1|471376|fgenesh2_kg.1__1330__AT1G12260.1
Length=1418
Score = 2342 bits (1268), Expect = 0.0
Identities = 1372/1421 (97%), Gaps = 12/1421 (1%)
Strand=Plus/Plus
Query 458 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 60
Query 518 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAG 577
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATCGATTTCATAAAG 120
Query 578 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 180
Query 638 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACT 697
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAATATCCCACAGGGACT 240
Query 698 CGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATC 757
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 241 CGAACCAATAGAGCAACAAAAGCTGGATTTTGGAAAGCCACTGGAAGAGATAAGGCTATC 300
Query 758 TATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 817
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 301 TATTTGAGGCATAGTCTAATTGGTATGGGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 360
Query 818 CCAAATGGACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAAC 877
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CCGAATGGACAAAAGTCCGATTGGATCATGCATGAATACCGCTTAGAAACCGATGAAAAC 420
Query 878 GGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGCA 937
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAAAGATTGGCTGCA 480
Query 938 GTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAACTTTCT 997
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GTTAGACGAATGGGAGATTACGACTCATCGCCTTCACATTGGTACGATGATCAACTTTCT 540
Query 998 TTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATCATCAG 1057
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTACCCAATCATCATCAT 600
Query 1058 CAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCAATGCATCTGCTTACGCT 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCAATGCATCTGCTTACGCT 660
Query 1118 CTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTACAACCACCTGGTA 1177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 CTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTATAACCACCTGGTA 720
Query 1178 CAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAGAA 1237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 CAACGAAATCATCTTCTTGATGAATCTCATTTATCATTCCTCCAACTTCCTCAACTAGAA 780
Query 1238 AGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAAC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAAC 840
Query 1298 ATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGGAA 1357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 841 ATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATCTCGCGCATGAGGAA 900
Query 1358 CAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGCAA 1417
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 CACTTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAATGAGCAA 960
Query 1418 GTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAAGC 1477
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 GTGATGGACCAAGTCACGGACTGGAGAGTTCTCGATAAATTTGTAGCTTCTCAGCTAAGC 1020
Query 1478 AACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACAAGCAAT 1537
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 AACGAGGAGGCCGCCACAGCTTCTGCATCTATACAGAACAATGCCAAGGACACAAGCAAT 1080
Query 1538 GCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAA 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAA 1140
Query 1598 TATACTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAAGTGAGCTGAAAGAGAA 1657
||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 1141 TATGCTGCTTCTACTTCTTCGAGTTGTCAAATTGATCTATGGAAGTAAGCAGAAAGAGAA 1200
Query 1658 GAC-ATATAA-ATGCatatatacatatatatatataCGTACACACGAACACTAATCAAGT 1715
|| |||||| || || ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1201 GATTATATAATATAAATGCATATATACCTATATATACGTACACACGAACACTAATCAAGT 1260
Query 1716 GTAGATGATGATGATG--G-T---ACAGATTTATATTTGCTTTGATTGATTCTTACTACA 1769
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTAGATGATGATGATGATGATGGTACAGATTTATATTTGCTTTGATTGATTCTTACTACA 1320
Query 1770 TTATTGAACTTATG-TCATATGCATATATACATTGCGTATCTATGCATATTTATACTTGT 1828
|||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1321 TTATTGAACTTATGGT-ATATGCATATATACATTGCGTATCTATGCATGT--ATACTTGT 1377
Query 1829 ACTCAATATGATTAACCATATATAAACTCTAATCTAAATGT 1869
||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 ACTCACTATGATTAACCATATATAAACTCTAATCTAAATGT 1418
> Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1
Length=1209
Score = 706 bits (382), Expect = 0.0
Identities = 628/745 (84%), Gaps = 24/745 (3%)
Strand=Plus/Plus
Query 458 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 517
|||||||| ||||| || || |||||||| || |||||||| || || ||||||||||||
Sbjct 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60
Query 518 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAG 577
|| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120
Query 578 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 637
||| |||||||||||||||||||||||||||| ||||||||||| ||||| || || |
Sbjct 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180
Query 638 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACT 697
|||||||| || || ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240
Query 698 CGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATC 757
|||||||||||||| || |||||||| || |||||||||||||||||||| ||||||||
Sbjct 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300
Query 758 TATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 817
||| | || |||||||| || || |||||||| ||||||||||||||||| |||||||||
Sbjct 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360
Query 818 CCAAATGGACA-AAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAA 876
||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 361 CCAAATGGACAGAAA-TCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAA 419
Query 877 CGGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGC 936
|||||||||||||||||||||||||| || |||||||| |||||||||| |||||| ||
Sbjct 420 TGGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGC 479
Query 937 -A-GTTAGACGAA--TGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAAC 992
| | | || ||| ||||||||||| | ||||| || || ||||||||||||||||| |
Sbjct 480 GACGGT-GAGGAAAATGGGAGATTACAATTCATCACCATCGCATTGGTACGATGATCAGC 538
Query 993 TTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATC 1052
| |||||||||||||||||||| || | | || ||||| | |||| ||||||||||
Sbjct 539 TCTCTTTTATGGCCTCCGAGCTTGATTCTAGTTCTCCACGACAGTTTCTTCCCAATCATC 598
Query 1053 ATCAGCA--GC-AGCAGCACGAGCACCAACA-ACATATGCCATATGGCCTCAATGCATCT 1108
|| | | || | || ||| | ||||| || |||| | || | |||||||||||| |||
Sbjct 599 ATTATAACCGCCACCATCACCATCACCAGCATACAT-TACCTTGTGGCCTCAATGCGTCT 657
Query 1109 ---GCTTACGC-T-CT-CAACAAC--C--C--TAACTTGCAATGCAAGCAAGAGCTAGAA 1156
||||| || | | ||||||| | | |||||||||||||||||||||||| ||
Sbjct 658 TCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGAG 717
Query 1157 CTACACTACAACCACCTGGTACAAC 1181
|||| ||||| ||| |||||||||
Sbjct 718 TTACATTACAATCACATGGTACAAC 742
Score = 69.4 bits (37), Expect = 9e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1602 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAA 1641
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1166 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTCTGGAA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5