BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12260.1 Length=1871 Score E Sequences producing significant alignments: (Bits) Value Ahg471376 jgi|Araly1|471376|fgenesh2_kg.1__1330__AT1G12260.1 2342 0.0 Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 706 0.0 > Ahg471376 jgi|Araly1|471376|fgenesh2_kg.1__1330__AT1G12260.1 Length=1418 Score = 2342 bits (1268), Expect = 0.0 Identities = 1372/1421 (97%), Gaps = 12/1421 (1%) Strand=Plus/Plus Query 458 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 60 Query 518 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAG 577 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATCGATTTCATAAAG 120 Query 578 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 180 Query 638 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACT 697 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAATATCCCACAGGGACT 240 Query 698 CGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATC 757 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 241 CGAACCAATAGAGCAACAAAAGCTGGATTTTGGAAAGCCACTGGAAGAGATAAGGCTATC 300 Query 758 TATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 817 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 301 TATTTGAGGCATAGTCTAATTGGTATGGGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 360 Query 818 CCAAATGGACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAAC 877 || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 361 CCGAATGGACAAAAGTCCGATTGGATCATGCATGAATACCGCTTAGAAACCGATGAAAAC 420 Query 878 GGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGCA 937 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 GGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAAAGATTGGCTGCA 480 Query 938 GTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAACTTTCT 997 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 481 GTTAGACGAATGGGAGATTACGACTCATCGCCTTCACATTGGTACGATGATCAACTTTCT 540 Query 998 TTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATCATCAG 1057 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 541 TTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTACCCAATCATCATCAT 600 Query 1058 CAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCAATGCATCTGCTTACGCT 1117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCAATGCATCTGCTTACGCT 660 Query 1118 CTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTACAACCACCTGGTA 1177 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 CTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTATAACCACCTGGTA 720 Query 1178 CAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAGAA 1237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 721 CAACGAAATCATCTTCTTGATGAATCTCATTTATCATTCCTCCAACTTCCTCAACTAGAA 780 Query 1238 AGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAAC 1297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAAC 840 Query 1298 ATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGGAA 1357 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 841 ATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATCTCGCGCATGAGGAA 900 Query 1358 CAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGCAA 1417 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 901 CACTTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAATGAGCAA 960 Query 1418 GTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAAGC 1477 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 961 GTGATGGACCAAGTCACGGACTGGAGAGTTCTCGATAAATTTGTAGCTTCTCAGCTAAGC 1020 Query 1478 AACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACAAGCAAT 1537 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1021 AACGAGGAGGCCGCCACAGCTTCTGCATCTATACAGAACAATGCCAAGGACACAAGCAAT 1080 Query 1538 GCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAA 1597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAA 1140 Query 1598 TATACTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAAGTGAGCTGAAAGAGAA 1657 ||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| Sbjct 1141 TATGCTGCTTCTACTTCTTCGAGTTGTCAAATTGATCTATGGAAGTAAGCAGAAAGAGAA 1200 Query 1658 GAC-ATATAA-ATGCatatatacatatatatatataCGTACACACGAACACTAATCAAGT 1715 || |||||| || || ||| ||| |||||||||||||||||||||||||||||||| Sbjct 1201 GATTATATAATATAAATGCATATATACCTATATATACGTACACACGAACACTAATCAAGT 1260 Query 1716 GTAGATGATGATGATG--G-T---ACAGATTTATATTTGCTTTGATTGATTCTTACTACA 1769 |||||||||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 1261 GTAGATGATGATGATGATGATGGTACAGATTTATATTTGCTTTGATTGATTCTTACTACA 1320 Query 1770 TTATTGAACTTATG-TCATATGCATATATACATTGCGTATCTATGCATATTTATACTTGT 1828 |||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| Sbjct 1321 TTATTGAACTTATGGT-ATATGCATATATACATTGCGTATCTATGCATGT--ATACTTGT 1377 Query 1829 ACTCAATATGATTAACCATATATAAACTCTAATCTAAATGT 1869 ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1378 ACTCACTATGATTAACCATATATAAACTCTAATCTAAATGT 1418 > Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 Length=1209 Score = 706 bits (382), Expect = 0.0 Identities = 628/745 (84%), Gaps = 24/745 (3%) Strand=Plus/Plus Query 458 ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTT 517 |||||||| ||||| || || |||||||| || |||||||| || || |||||||||||| Sbjct 1 ATGAATTCGTTTTCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTT 60 Query 518 GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAG 577 || ||||||||| ||||||||||||| |||||||||||||||||||| |||||||| || Sbjct 61 GTTGACTACTACTTGAGGAAAAAAGTAGCATCGAAGAGAATAGAAATCGATTTCATCAAT 120 Query 578 GACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCAT 637 ||| |||||||||||||||||||||||||||| ||||||||||| ||||| || || | Sbjct 121 GACGTTGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAAC 180 Query 638 GAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACT 697 |||||||| || || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 181 GAAGAGCAAAGCGAATGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCTACAGGAACT 240 Query 698 CGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATC 757 |||||||||||||| || |||||||| || |||||||||||||||||||| |||||||| Sbjct 241 CGAACCAATAGAGCGACGAAAGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATA 300 Query 758 TATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCC 817 ||| | || |||||||| || || |||||||| ||||||||||||||||| ||||||||| Sbjct 301 TATATAAGACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGCC 360 Query 818 CCAAATGGACA-AAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAA 876 ||||||||||| ||| || |||||||||||||||||||| ||||||||||| ||||||| Sbjct 361 CCAAATGGACAGAAA-TCCGATTGGATCATGCACGAATATCGCTTAGAAACAAATGAAAA 419 Query 877 CGGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGC 936 |||||||||||||||||||||||||| || |||||||| |||||||||| |||||| || Sbjct 420 TGGAACTCCTCAGGAAGAAGGATGGGTGGTATGTAGGGTGTTCAAGAAGAAATTGGCAGC 479 Query 937 -A-GTTAGACGAA--TGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAAC 992 | | | || ||| ||||||||||| | ||||| || || ||||||||||||||||| | Sbjct 480 GACGGT-GAGGAAAATGGGAGATTACAATTCATCACCATCGCATTGGTACGATGATCAGC 538 Query 993 TTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATC 1052 | |||||||||||||||||||| || | | || ||||| | |||| |||||||||| Sbjct 539 TCTCTTTTATGGCCTCCGAGCTTGATTCTAGTTCTCCACGACAGTTTCTTCCCAATCATC 598 Query 1053 ATCAGCA--GC-AGCAGCACGAGCACCAACA-ACATATGCCATATGGCCTCAATGCATCT 1108 || | | || | || ||| | ||||| || |||| | || | |||||||||||| ||| Sbjct 599 ATTATAACCGCCACCATCACCATCACCAGCATACAT-TACCTTGTGGCCTCAATGCGTCT 657 Query 1109 ---GCTTACGC-T-CT-CAACAAC--C--C--TAACTTGCAATGCAAGCAAGAGCTAGAA 1156 ||||| || | | ||||||| | | |||||||||||||||||||||||| || Sbjct 658 TCAGCTTATGCATTCAACAACAACAACAACCCTAACTTGCAATGCAAGCAAGAGCTCGAG 717 Query 1157 CTACACTACAACCACCTGGTACAAC 1181 |||| ||||| ||| ||||||||| Sbjct 718 TTACATTACAATCACATGGTACAAC 742 Score = 69.4 bits (37), Expect = 9e-11 Identities = 39/40 (98%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 1602 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAA 1641 |||||||||||||||||||||||||||||||||| ||||| Sbjct 1166 CTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTCTGGAA 1205 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70276502025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5