BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12270.1

Length=1949
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910991 jgi|Araly1|910991|Al_scaffold_0001_1245                    505    6e-142


> Ahg910991 jgi|Araly1|910991|Al_scaffold_0001_1245
Length=441

 Score =  505 bits (273),  Expect = 6e-142
 Identities = 320/342 (94%), Gaps = 6/342 (2%)
 Strand=Plus/Plus

Query  43   GCTAAAGCTAAAGGAAACGCTGCTTTCTCTTCCGGTGACTTCACCACGGCTATAAAC-CA  101
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct  4    GCTGAAGCTAAAGGAAACGCTGCTTTCTCTTCCGGTGACTTCACCACCGCTAT-AACTCA  62

Query  102  CTTCACCGAAGCCATAGCTCTTGCTCCAACCAATCACGTCCTCTTCTCAAACCGTTCCGC  161
            |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  63   CTTCACCGAAGCCATAACTCTTGCTCCAACCAACCACGTCCTCTTCTCAAACCGTTCCGC  122

Query  162  TGCTCACGCGTCGCTTCATCAATACGCCGAAGCTCTCTCCGATGCGAAAGAGACGATTAA  221
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  123  TGCTCACGCGTCGCTTCACCAATACGCCGAAGCTCTCTCCGATGCGAAAGAGACG-TTAA  181

Query  222  A-CTCAAACCGTATTGGCCTAAAGGTTATAGCCGT-CTCGGTGCTGCTCATTTAGGGTTA  279
            | |||||||||||||||||||| |||||||||| | ||||| |||||| | |||||| ||
Sbjct  182  AACTCAAACCGTATTGGCCTAAGGGTTATAGCC-TACTCGGAGCTGCTTACTTAGGGCTA  240

Query  280  AACCAGTTTGAGTTAGCCGTCACTGCTTATAAGAAAGGTTTAGATGTCGATCCGACTAAC  339
            |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct  241  AACCAGTTCGAGTTAGCCGTCACTGCTTATAAGAAGGGTTTGGATATCGATCCGACTAAC  300

Query  340  GAGGCGTTGAAATCTGGATTGGCTGATGCGGAGGCGTCTGTT  381
            |||||||||| ||||||||||| |||||||||||||||||||
Sbjct  301  GAGGCGTTGAGATCTGGATTGGTTGATGCGGAGGCGTCTGTT  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 73247541135


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5