BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12310.1

Length=892
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920067 jgi|Araly1|920067|scaffold_101348.1                        776    0.0  


> Ahg920067 jgi|Araly1|920067|scaffold_101348.1
Length=487

 Score =  776 bits (420),  Expect = 0.0
 Identities = 461/481 (96%), Gaps = 2/481 (0%)
 Strand=Plus/Plus

Query  91   AAACCCGGAAGAATCGAAAAATGGGGAAAGATGGTCTGAGCGACGATCAGGTCTCGTCGA  150
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  1    AAACCCGGAAGAATCGAAGAATGGGGAAAGATGGTCTGAGCGACGATCAGGTCTCATCGA  60

Query  151  TGAAGGAAGCCTTCATGCTCTTCGACACCGATGGCGACGGCAAAATCGCACCGTCAGAGC  210
            ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct  61   TGAAGGAAGCCTTCATGCTATTCGACACCGACGGCGACGGCAAAATCGCGCCGTCAGAGC  120

Query  211  TCGGGATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCCCAGCTGAAATCCATAA  270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCGGGATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCCCAGCTGAAATCCATAA  180

Query  271  TCGCATCCGAGAATCTCTCTTCACCGTTTGATTTCAACAGATTCCTCGATCTCATGGCGA  330
            ||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  TCGCATCGGAAAACCTCTCTTCTCCGTTTGATTTCAACAGATTCCTCGATCTCATGGCGA  240

Query  331  AACATCTGAAGACGGAACCTTTCGATCGCCAGCTCCGTGACGCATTCAAAGTGCTCGATA  390
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AACACCTGAAGACGGAACCTTTCGATCGCCAGCTCCGTGACGCATTCAAAGTGCTCGATA  300

Query  391  AGGAAGGTACCGGGTTCGTTGCTGTGGCGGATCTGAGGCATATTCTGACCAGTATCGGAG  450
            | |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct  301  AAGAAGGTACAGGGTTCGTGGCTGTAGCGGATCTGAGGCATATTCTCACCAGTATTGGAG  360

Query  451  AGAAGCTGGAGCCTAATGAGTTCGATGAGTGGATCAAGGAGGTGGATGTTGGATCCGATG  510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGAAGCTGGAGCCTAATGAGTTCGATGAGTGGATCAAGGAGGTGGATGTTGGATCCGATG  420

Query  511  GAAAGATCCGGTATGAAGATTTCATAGCAAGGATGGTTGCTAAGTGAGATCTA-A-TCTT  568
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct  421  GGAAGATCCGGTATGAAGATTTCATAGCAAGGATGGTCGCTAAGTGAGATCTATAATCTT  480

Query  569  T  569
            |
Sbjct  481  T  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33052569039


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5