BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12320.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471381 jgi|Araly1|471381|fgenesh2_kg.1__1335__AT1G12320.1 1240 0.0
> Ahg471381 jgi|Araly1|471381|fgenesh2_kg.1__1335__AT1G12320.1
Length=846
Score = 1240 bits (671), Expect = 0.0
Identities = 795/852 (93%), Gaps = 19/852 (2%)
Strand=Plus/Plus
Query 1 aagaagcagaacacaagaaacgtgagaaactttgagaagaccaagaagaagaagcagaag 60
|||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||
Sbjct 1 AAGAAGCAGAACCCAAGAAACGTGAGAAA-GTTGAGAAGAAGAAGAAGAAGAAGAAGAAA 59
Query 61 aagaagaaAATGAAATTGGTTTGGTCTCCGGAAACAGCATCAAAGGCTTATATAGACACC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 AAGAAGAAAATGAAATTGGTTTGGTCTCCTGAAACAGCATCAAAGGCTTATATAGACACC 119
Query 121 GTTAAATCGTGTGAGAATCTTGAAACGCCGGACGCGGCGGAGCTAATAGCGGCGATGGCG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTAAATCGTGCGAGAATCTTGAAACGCCGGACGCGGCGGAGCTAATAGCGGCGATGGCG 179
Query 181 GCGGGATGGAACGTGAAGCTGATCGTGGAAACTTGGTCAGAAGGAGACGCAATAGCTTCA 240
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTGGATGGAACGCGAAGCTGATCGTGGAAACTTGGTCAGAAGGAGACGCAATAGCTTCA 239
Query 241 AGTATTGGTTTAAACGTAGCAAGCAAACACGCAAACGCTAAACACATATGTATAGTACAA 300
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 240 AGTATTGGTTTAAACGTAGCGAGCCAACACGCAAACGCTAAACACATATGTATATTACAA 299
Query 301 AACTCAAGATCAGAATCTGCTTATCTCCAAGCTATTCAAGAATCTTCATCTCCCTTGAAC 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 AACTCGAGATCAGAATCTGCTTATCTCCAAGCTATTCAAGAATCTTCATCTCCTTTGAAC 359
Query 361 TTTCCAGAGACTATCGTCGCTGAAGAACCCGGAAAAGCGATGAAGAAGCTACAAGGAGTC 420
|| |||||||| ||| |||||||||| |||| ||||||||||||||||||||||||| ||
Sbjct 360 TTACCAGAGACAATCATCGCTGAAGAGCCCGAAAAAGCGATGAAGAAGCTACAAGGAATC 419
Query 421 GACTTCTTGGTCGTGGATTGGCGGAACAAAGAATTTGCAGCGGCTGCGTTGAAAAACGCT 480
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 420 GATTTCTTGGTCGTGGATTGGCGGAACAAAGAATTTGCAGCTGCTACGTTGAAGAACGCT 479
Query 481 GCGTTTGGAAACAGAGGAGCTGTTGTGGTTTGTAGAAACGGGTATTCGAGCTTGAGAAGG 540
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GCGTTTGGAAGCAGAGGAGCGGTTGTGGTTTGTAGAAACGGGTATTCGAGTTTGAGAAGG 539
Query 541 GTTTTAAGAGACCGGAAAGTTGTTAGAACGGTGACTCTTCCGGTCACCGGAGGTATTGAG 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTTAAGAGATCGGAAAGTTGTTAGAACGGTGACTCTTCCGGTCACCGGAGGTATTGAG 599
Query 601 ATAGCTCATGTTGCGGCTAGGAACTCAGGGAAGAGTG-GTA-AC-AATAAGAGAAGATGG 657
|| |||||||| |||||||||| |||||||||||||| | | | |||||||||||||||
Sbjct 600 ATTGCTCATGTCGCGGCTAGGAGCTCAGGGAAGAGTGAGAAGAGTAATAAGAGAAGATGG 659
Query 658 ATCACACATGTTGATCAGAGATCAGGAGAGGAACATGTGTTTAGTATCTAGAAAGTCAGA 717
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 660 ATCACACATGTTGATCAGAGATCAGGAGAAGAACATGTGTTTAGTATCTAGAAAGTAAGA 719
Query 718 GACAAATA------GTCATAAG--T--GTTTATTGGATCTTGTATTTGTTGTGTTTGTAC 767
|||||||| |||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 720 GACAAATACAATTTGTCATAAGCGTTTGTTTATTGGATCTTGTATTTGTTGTATTTGTAC 779
Query 768 ATAAGATGATTCCATCAGATGCAATTGTTATTGAAGAAAACATGCTTGTCTTATAAATGT 827
||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 ATAAGAT--T-CCAT-AGATGCAATTGTTATTGAA-AAAACATGCTTGTCTTATAAATGT 834
Query 828 GATCTTTGTGTT 839
|||| |||||||
Sbjct 835 GATCGTTGTGTT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5