BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12330.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471382 jgi|Araly1|471382|fgenesh2_kg.1__1336__AT1G12330.1 2691 0.0
Ahg941048 jgi|Araly1|941048|scaffold_601592.1 193 4e-48
> Ahg471382 jgi|Araly1|471382|fgenesh2_kg.1__1336__AT1G12330.1
Length=1646
Score = 2691 bits (1457), Expect = 0.0
Identities = 1587/1650 (96%), Gaps = 7/1650 (0%)
Strand=Plus/Plus
Query 9 aaaaaaaaTGGCTCCTTCGTCTTCATCTTCTCCTTCCAAATCTCCTGTTCCATCTCTTCA 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAATGGCTCCTTCGTCTTCATCTTCTCCTTCCAAATCTCCTGTTCCATCTCTTCA 60
Query 69 CCAATCCCTTCACTTCACTCCTATTCTAGAATGTGAAGAAGACGACCTCCAAGAAGAAAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATCCCTTCACTTCACTCCTATTCTAGAATGTGAAGAAGACGACCTCCAAGAAGAAAG 120
Query 129 ATACAAAAACAGAGCAACACCAAGCAGCGACGGTGGTTCTTCCGccacaccaaaccacca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATACAAAAACAGAGCAACACCAAGCAGCGACGGTGGTTCTTCCGCCACACCAAACCACCA 180
Query 189 gcaccaccgccgtaccaacagcaacaacaaccaccagcacactctaacaccTCTCCACCA 248
||||||||||| | ||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 181 CCACCACCGCCGCAACAACAGCAACAACCACCA--A-CACACTCTAACACCTCTCCACCA 237
Query 249 CAACGGCAAACCCCAAACCAGAAAACGACATGACGACAACGACGAAGACGATGGTGGTGC 308
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 CAACGGAAAACCCCAAACCAGAAAACGACATGACGACAACGACGAAGACGACGGTGGTGC 297
Query 309 CGTATCCTGCAACAAGTGTCGACCTCACCACTCTCACCGTGACAAATTCTCCGTCGTACC 368
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGTCTCCTGCAACAAGTGTCGGCCTCACCACTCTCACCGTGACAAATTCTCCGTCGTACC 357
Query 369 TCTCGAAAGCCACAACAACCCTTCTTTCATCTCTAGCCCCAATCTCATAATCAAATCCAT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCGAAAGCCACAACAACCCTTCTTTCATCTCTAGCCCCAATCTCATAATCAAATCCAT 417
Query 429 CTTCCAATCTCTCACACGGAGAAGCCCCAAACCTTCCTCTGCAACGGCGGCGCTTCCACC 488
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 418 CTTTCAATCTCTCACACGGAGAAGTCCCAAACCTTCCTCTGCGACGGCGGCGCTTCCACC 477
Query 489 GCGCTCTTCCTCATCCTCCGCCGCAGATGCTTCTAGAGAAGAACAGTGGCGGTTAGCTGT 548
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 478 GCGCTCTTCCTCCTCCTCCGCCGCAGATGCTTCAAGAGAAGAGCAGTGGCGGTTAGCTGT 537
Query 549 GGCGGAGCTTTCTCATAAACTGATTCAAGCCACGAAGAAGAAAGAAGACGCGGTTATAGA 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 GGCGGAGCTTTCTCATAAACTGATTCAAGCCACGAAGAAGAAAGAAGACGCGGTCATAGA 597
Query 609 AGCTTCTAGGTTGAAATCATCCATGGCAGAGCTAGAGAAGAAACTCAATAAACTCGAGAT 668
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 AGCTTCTAGGTTGAAATCATCCATGGCAGAGCTTGAGAAGAAACTCAATAAACTCGAGAT 657
Query 669 TTACTGTCACAATCTCAAATCAGGTCTCGACGAATGCAGCAACAAAAAACAGAGTGTTCC 728
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 658 TTACTGTCACAATCTCAAATCAGGTCTTGACGAATGCAGCAACAAGAAACAGAGTGTTAC 717
Query 729 GATTCGAAAAGACGGATTCAACGACAGGATCATTCAGCAGTTTCTCGTCTCTGTGTCGGA 788
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 718 GATTCGAAAAGACGGATTCAACGACAGGATCATTCAGCAATTTCTCGTTTCTGTGTCGGA 777
Query 789 ATCTCGTTCTTCGATCAGAGCTTTAAGTAGATCTCTCGCCTCGCAGCTACGAACCGTCGG 848
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 778 ATCTCGATCTTCGATCAGAGCTTTGAGTAGATCTCTCGCGTCGCAGCTACGAACCGTCGG 837
Query 849 TGGCAAAGTTTACGAGAGACTCTCTCTTCTTCTTCAACCTTTCGATGTAAAGATCAACTC 908
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TGGCAAAGTTTACGAGAGACTCTCTCTTCTTCTTCAACCATTCGATGTAAAGATCAACTC 897
Query 909 TTTTGCCAAAAACCCTAAAAGTCTGATCTTTTACCTCGAAGCGATTCTGAGCAGAGCCTT 968
||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 898 TTTCGCGAAAAACCCTAAAAGTTTGATCTTTTACCTCGAAGCGATTCTGAGTAGAGCTTT 957
Query 969 CTTCGAGGATTTCGAAGCTCCTGGGTTTCAGAAAAACGGGTCGACCCGGATTTTGAATCC 1028
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 958 CTTCGAGGATTTCGAAGCTTCTGGGTTTCAGAAGAATGGGTCGACCCGGATTTTGAATCC 1017
Query 1029 AATTGATCGTTGTGAATCCAATTACGCTTCGTTTAACGTCTTGATGGAGCTGACGTGGGA 1088
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 GATTGATCGTTGTGAATCCAATTACGCTTCGTTTAACGTCTTGATGGAGCTAACGTGGGA 1077
Query 1089 TGAGGTGTTGAGCAGAGGAACGAAGCATTTCTCGGAGGAGTTTAGCCGTTTCTGTGACCG 1148
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1078 TGAGGTGTTGAGCAGAGGAACGAAGCATTTCTCGGAGGAGTTTAGCCGATTCTGTGACCG 1137
Query 1149 GAAGATGAGTGACGTCGTTTCGATGCTTAGCTGGAACCGTGCCTGGCCTGAACCGCTTTT 1208
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1138 GAAAATGAGTGACGTCGTTTCGATGCTTAGCTGGAACAGAGCCTGGCCTGAACCGCTTTT 1197
Query 1209 ACAGGCTTTCTTTGGTGCGTCAAAGAGTGTTTGGTTGGTTCATCTTTTGGCTAATTCAGT 1268
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 ACAGGCTTTCTTTGGTGCGTCGAAGAGTGTTTGGTTGGTTCATCTTTTGGCTAATTCGGT 1257
Query 1269 GAACCCGGGGTTGCAAATCTTTCGTGTGGAGAAAGATGACCGGTTTGATCCGATTTACAT 1328
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1258 GAACCCGGGTTTGCAAATCTTTCGCGTGGAGAAAGATGACCGGTTTGATCCGATTTACAT 1317
Query 1329 GGAGGAAACCGGTGGGGAACGGTTTAAGAGTCTGGTTAGAGCTATGGTTCAGCCCGGGTT 1388
||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1318 GGAGGAAACTGGTGGAGAACGGTTCAAGAGTCTGGTTAGAGCTATGGTTCAACCCGGGTT 1377
Query 1389 TTATGTCTATGGGAGTGTGGTTAAGTGCAAGGTGGTTTGCAAGCAATGCGGCAGCGATGA 1448
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTACGTCTATGGAAGTGTGGTTAAGTGCAAGGTGGTTTGCAAGCAATGCGGCAGCGATGA 1437
Query 1449 GGAAGAACTAGAAGACCATACGGTCAAAGAATGTAATAAAAACGACAAGAGTTTAATAAG 1508
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1438 GGAAGAACTAGAAGACCGTACGGTCAAAGAATGTAATAAAAGCGACAAGAGTTTAATAAG 1497
Query 1509 CATTTGTAGCCCATTAGGAGGTTAATTACGTTCATTTAAGGT--TTA-AAATATTGGTGG 1565
|||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 1498 CATTTGTAGCCCATTAGGAGGTTAATTACGTTGATTTAAGGAGGTTATAAA-ATTGGTGG 1556
Query 1566 GTTTTTGTCTTGTCTTGTGAGGTTGTAATTaaaaaaaTCAATGGCTTTTGCAAGTGAATA 1625
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1557 GTTTTTGTTTTGTCTTGTGAGGTTGTAATTAAAAAAATGAATGGCTTTTGCAAGTGAATA 1616
Query 1626 TTTTAAAACTGTTTAATTAATGACTTTTGC 1655
||||||||||||||| ||||||||||||||
Sbjct 1617 TTTTAAAACTGTTTATTTAATGACTTTTGC 1646
> Ahg941048 jgi|Araly1|941048|scaffold_601592.1
Length=730
Score = 193 bits (104), Expect = 4e-48
Identities = 120/128 (94%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 394 TTCATCTCTAGCCCCAATCTCATAATCAAATCCATCTTCCAATCTCTCACACGGAGAAGC 453
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TTCATCTCTAGCCCCAATCTGATAATCAAATCCATCTTTCAATCTCTCACACGGAGAAGT 179
Query 454 CCCAAACCTTCCTCTGCAACGGCGGCGCTTCCACCGCGCTCTTCCTCATCCTCCGCCGCA 513
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CCCAAACCTTCCTCTACGACGGCGGCGCTTCCACCGCGCTCTTCCTCCTCCTCCGCCGCC 239
Query 514 GATGCTTC 521
|| |||||
Sbjct 240 GACGCTTC 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5