BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12350.1 Length=1279 Score E Sequences producing significant alignments: (Bits) Value Ahg910999 jgi|Araly1|910999|Al_scaffold_0001_1253 1546 0.0 Ahg324881 jgi|Araly1|324881|fgenesh1_pm.C_scaffold_6000101 1059 0.0 Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1 106 5e-22 > Ahg910999 jgi|Araly1|910999|Al_scaffold_0001_1253 Length=954 Score = 1546 bits (837), Expect = 0.0 Identities = 916/955 (96%), Gaps = 2/955 (0%) Strand=Plus/Plus Query 157 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 60 Query 217 CCTCTGAAGAACAAGGAAGAGATCGTAGCCAATCTTAATCAGTTCATTGAGCTGAATTC- 275 |||||||||||||| |||||||||||| | || ||||||||||||||||||||||| || Sbjct 61 CCTCTGAAGAACAATGAAGAGATCGTAACTAAGCTTAATCAGTTCATTGAGCTGAA-TCA 119 Query 276 TTCGTGTCAAGGAGGGATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 335 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTCGTGTGAAGGAGGGAAGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 179 Query 336 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGC 395 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 180 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGTAATAGAGGTGCTGC 239 Query 396 TTCTACTGAGAATTTCGTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAAC 455 ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 240 GTCTACTGAGAATTTCGTCAGGGCTGGATATGCTGTGATCTTTCTCTATAGGAGGGGAAC 299 Query 456 TTGTCAACCGTATTGCCGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCC 515 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 300 TTGTCAACCCTATTGCCGGTATCTTCCTGATGATCCATTCCTCGAATGTTTTGAGTTTCC 359 Query 516 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGGAGCTGTGAAGATGGCTGTTAT 575 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGAAGCTGTGAAGATGGCTGTTAT 419 Query 576 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATA 635 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTAAAACTCCCATTCTCAACCATATA 479 Query 636 TGAATATCTCCAGATGTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTC 695 |||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||| Sbjct 480 TGAATATCTCCAGATGTTGCGGTTGATTGCAACGGTCTTAAAAGATGTCGGTCCATGTTC 539 Query 696 GATGTTTTATCTTGCTGCTGCTGTATCTGACTTCTATGTGCCATGGTTAAGCATGACAGA 755 |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 540 AATGTTTTATCTTGCTGCTGCTGTATCAGACTTTTATGTGCCATGGACGAGCATGACAGA 599 Query 756 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 659 Query 816 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGA 875 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 660 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCATTCTGCATATCATTCAAGCTTGA 719 Query 876 GACAGACTCAAAGATTTTGCTAGAGAAAGCTACAAAGGCTTTACAAAAATACAAAGTGCA 935 ||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||| Sbjct 720 GACAGACTCAAAGATTTTGATAGAGAAGGCTACAAAGGCTCTACAGAAATACAAAGTGCA 779 Query 936 CGCAGTTGTAGCAAATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAG 995 ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 780 CGCTGTTGTAGCAAATGAGCTATTAACGCGTAAGGAGGAGGTTGTGGTTGTTTCAAGTAG 839 Query 996 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCGGAATCTATCGTAGAAGATAATCT 1055 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 840 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCTGAATCCATCGTAGAAGATAATCT 899 Query 1056 CATTCGTCTCCTCGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 900 GATTCGTCTCATCGTAGATCGACATTCAACATACATCAAAGAATCTCACACTTGA 954 > Ahg324881 jgi|Araly1|324881|fgenesh1_pm.C_scaffold_6000101 Length=912 Score = 1059 bits (573), Expect = 0.0 Identities = 827/943 (88%), Gaps = 43/943 (5%) Strand=Plus/Plus Query 179 TGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCACCTCTGAAGAACAAGGAA-GAG 237 ||||||||||||| ||||||||||| ||||| || ||||||||||||||| | ||| ||| Sbjct 2 TGGAAGATGAAATTAGTTCGTTTTTTGAATCATCCCCACCTCTGAAGAAC-ATGAAGGAG 60 Query 238 ATCGT--AGCCAATCTTAATCAGTTCATTGAGCTGAATTCTTC---G-TGTCAAGGAGGG 291 | | | || ||||||||||||||||| |||||||||||||| | | || |||| || Sbjct 61 A-C-TACAGAGAATCTTAATCAGTTCATCGAGCTGAATTCTTCAGGGTTTTC-AGGA-GG 116 Query 292 ATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCCATTGGAGCAACGATGT 351 | |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 117 A--AGGAGGATTGTATGTGTGACTTCAGGTGGAACAACGGTTCCATTGGAGCAACGATGT 174 Query 352 GTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGCTTCTACTGAGAATTTC 411 || || || || ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 175 GTTAGGTATATCGATAACTTCAGCTCCGGAAATAGAGGTGCTGCTTCTACTGAGAATTTT 234 Query 412 GTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAACTTGTCAACCGTATTGC 471 || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 235 GTGAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGTATTGC 294 Query 472 CGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATGCCAAAAACATT 531 |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 295 CGGTCTCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATAAGACTAACATT 354 Query 532 CAAGTTCATGGGTCACATTCAGGA-GCTGTGAAGATGGCTGTTATGGACCAGCAAGCTGC 590 ||||||||| ||||||| ||| |||||||| |||||||||||||| |||||||| || Sbjct 355 CAAGTTCATAAATCACATTT-GGAAGCTGTGAAAATGGCTGTTATGGATCAGCAAGCAGC 413 Query 591 AGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATATGAATATCTCCAGAT 650 ||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| Sbjct 414 AGTAGCAGAAGGTCGCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGAT 473 Query 651 GTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTCGATGTTTTATCTTGC 710 ||||||||||||||| | | ||||||||||||| ||||||| ||| |||||||||||||| Sbjct 474 GTTGCGGTTGATTGCAATGGTATTGAAAGATGTTGGTCCATATTCAATGTTTTATCTTGC 533 Query 711 TGCTGCTGTATCTGACTTCTATGTGCCATGGT-TAAGCATGACAGAGCACAAAATAGAAT 769 |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| Sbjct 534 TGCTGCTGTATCTGACTTTTATGTGCCATGGGATA-GCATGACAGAGCACAAAATAGAAT 592 Query 770 CAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAATGCTTTCAATCTTGA 829 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 593 CAGGATCTGGTCCTTTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAATCTTGA 652 Query 830 GATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGA 889 |||||||| || || || |||||||||||||||| | | ||||||| Sbjct 653 GATCAAAT-GG-CT--------TT-CTGCATATCATTCAAG----A--C----TCAAAGA 691 Query 890 TTTTGCTAGAGAAAGCTACAAAGGCTTTACA-AAAATACAAAGTGCACGCAGTTGTAGCA 948 || || ||||||| |||||||||||| || | |||||||||||| |||||||||||||| Sbjct 692 TTCTGATAGAGAAGGCTACAAAGGCTCTA-AGAAAATACAAAGTTCACGCAGTTGTAGCC 750 Query 949 AATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAGCGGTAATGTTGTG 1008 ||||| |||| |||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 751 AATGAGCTATCAACGCGTAAGGAAGAGGTTGTGGTTGTTTCAAGCAGTGGTAATGTTGTG 810 Query 1009 GTGAGACGTGA-TAGCAATAAGCCGGAATCTATCGTAGAAGATAATCTCATTCGTCTCCT 1067 || ||||| || | | | |||||| |||||||| || ||||||||||||||||||||| | Sbjct 811 GTTAGACGCGAATGGGA-TAAGCCTGAATCTATTGTTGAAGATAATCTCATTCGTCTCAT 869 Query 1068 CGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110 |||||| ||||||||||||||||||||||||| || || |||| Sbjct 870 CGTAGACCGACATTCAACATACATCAAAGAATATCACAGTTGA 912 > Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1 Length=443 Score = 106 bits (57), Expect = 5e-22 Identities = 74/82 (90%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 9 GTTTGGTAATTAGGTTATCTTATAAAGCTAATCCTTCT-C-TCACACTGACAATCGTCGT 66 |||| ||||||||||||||| ||| ||||||| ||||| | |||| ||||||||||||| Sbjct 1 GTTTTGTAATTAGGTTATCTGATAGAGCTAATTCTTCTCCTTCACTGTGACAATCGTCGT 60 Query 67 TATCAAGGTGATTTCTTTCTCT 88 |||||||||||||||||||||| Sbjct 61 TATCAAGGTGATTTCTTTCTCT 82 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47806137918 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5