BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12350.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910999 jgi|Araly1|910999|Al_scaffold_0001_1253 1546 0.0
Ahg324881 jgi|Araly1|324881|fgenesh1_pm.C_scaffold_6000101 1059 0.0
Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1 106 5e-22
> Ahg910999 jgi|Araly1|910999|Al_scaffold_0001_1253
Length=954
Score = 1546 bits (837), Expect = 0.0
Identities = 916/955 (96%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 157 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 60
Query 217 CCTCTGAAGAACAAGGAAGAGATCGTAGCCAATCTTAATCAGTTCATTGAGCTGAATTC- 275
|||||||||||||| |||||||||||| | || ||||||||||||||||||||||| ||
Sbjct 61 CCTCTGAAGAACAATGAAGAGATCGTAACTAAGCTTAATCAGTTCATTGAGCTGAA-TCA 119
Query 276 TTCGTGTCAAGGAGGGATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 335
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCGTGTGAAGGAGGGAAGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 179
Query 336 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGC 395
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGTAATAGAGGTGCTGC 239
Query 396 TTCTACTGAGAATTTCGTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAAC 455
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GTCTACTGAGAATTTCGTCAGGGCTGGATATGCTGTGATCTTTCTCTATAGGAGGGGAAC 299
Query 456 TTGTCAACCGTATTGCCGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCC 515
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TTGTCAACCCTATTGCCGGTATCTTCCTGATGATCCATTCCTCGAATGTTTTGAGTTTCC 359
Query 516 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGGAGCTGTGAAGATGGCTGTTAT 575
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGAAGCTGTGAAGATGGCTGTTAT 419
Query 576 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATA 635
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTAAAACTCCCATTCTCAACCATATA 479
Query 636 TGAATATCTCCAGATGTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTC 695
|||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 480 TGAATATCTCCAGATGTTGCGGTTGATTGCAACGGTCTTAAAAGATGTCGGTCCATGTTC 539
Query 696 GATGTTTTATCTTGCTGCTGCTGTATCTGACTTCTATGTGCCATGGTTAAGCATGACAGA 755
|||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 540 AATGTTTTATCTTGCTGCTGCTGTATCAGACTTTTATGTGCCATGGACGAGCATGACAGA 599
Query 756 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 659
Query 816 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGA 875
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCATTCTGCATATCATTCAAGCTTGA 719
Query 876 GACAGACTCAAAGATTTTGCTAGAGAAAGCTACAAAGGCTTTACAAAAATACAAAGTGCA 935
||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||
Sbjct 720 GACAGACTCAAAGATTTTGATAGAGAAGGCTACAAAGGCTCTACAGAAATACAAAGTGCA 779
Query 936 CGCAGTTGTAGCAAATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAG 995
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CGCTGTTGTAGCAAATGAGCTATTAACGCGTAAGGAGGAGGTTGTGGTTGTTTCAAGTAG 839
Query 996 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCGGAATCTATCGTAGAAGATAATCT 1055
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 840 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCTGAATCCATCGTAGAAGATAATCT 899
Query 1056 CATTCGTCTCCTCGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110
||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GATTCGTCTCATCGTAGATCGACATTCAACATACATCAAAGAATCTCACACTTGA 954
> Ahg324881 jgi|Araly1|324881|fgenesh1_pm.C_scaffold_6000101
Length=912
Score = 1059 bits (573), Expect = 0.0
Identities = 827/943 (88%), Gaps = 43/943 (5%)
Strand=Plus/Plus
Query 179 TGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCACCTCTGAAGAACAAGGAA-GAG 237
||||||||||||| ||||||||||| ||||| || ||||||||||||||| | ||| |||
Sbjct 2 TGGAAGATGAAATTAGTTCGTTTTTTGAATCATCCCCACCTCTGAAGAAC-ATGAAGGAG 60
Query 238 ATCGT--AGCCAATCTTAATCAGTTCATTGAGCTGAATTCTTC---G-TGTCAAGGAGGG 291
| | | || ||||||||||||||||| |||||||||||||| | | || |||| ||
Sbjct 61 A-C-TACAGAGAATCTTAATCAGTTCATCGAGCTGAATTCTTCAGGGTTTTC-AGGA-GG 116
Query 292 ATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCCATTGGAGCAACGATGT 351
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 117 A--AGGAGGATTGTATGTGTGACTTCAGGTGGAACAACGGTTCCATTGGAGCAACGATGT 174
Query 352 GTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGCTTCTACTGAGAATTTC 411
|| || || || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 GTTAGGTATATCGATAACTTCAGCTCCGGAAATAGAGGTGCTGCTTCTACTGAGAATTTT 234
Query 412 GTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAACTTGTCAACCGTATTGC 471
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 235 GTGAAGGCTGGATATGCTGTGATATTTCTGTATAGGAGGGGAACTTGCCAACCGTATTGC 294
Query 472 CGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATGCCAAAAACATT 531
|||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 295 CGGTCTCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCCAGATAAGACTAACATT 354
Query 532 CAAGTTCATGGGTCACATTCAGGA-GCTGTGAAGATGGCTGTTATGGACCAGCAAGCTGC 590
||||||||| ||||||| ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 355 CAAGTTCATAAATCACATTT-GGAAGCTGTGAAAATGGCTGTTATGGATCAGCAAGCAGC 413
Query 591 AGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATATGAATATCTCCAGAT 650
||| |||||||||||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 414 AGTAGCAGAAGGTCGCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGAT 473
Query 651 GTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTCGATGTTTTATCTTGC 710
||||||||||||||| | | ||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 474 GTTGCGGTTGATTGCAATGGTATTGAAAGATGTTGGTCCATATTCAATGTTTTATCTTGC 533
Query 711 TGCTGCTGTATCTGACTTCTATGTGCCATGGT-TAAGCATGACAGAGCACAAAATAGAAT 769
|||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 534 TGCTGCTGTATCTGACTTTTATGTGCCATGGGATA-GCATGACAGAGCACAAAATAGAAT 592
Query 770 CAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAATGCTTTCAATCTTGA 829
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 CAGGATCTGGTCCTTTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAATCTTGA 652
Query 830 GATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGA 889
|||||||| || || || |||||||||||||||| | | |||||||
Sbjct 653 GATCAAAT-GG-CT--------TT-CTGCATATCATTCAAG----A--C----TCAAAGA 691
Query 890 TTTTGCTAGAGAAAGCTACAAAGGCTTTACA-AAAATACAAAGTGCACGCAGTTGTAGCA 948
|| || ||||||| |||||||||||| || | |||||||||||| ||||||||||||||
Sbjct 692 TTCTGATAGAGAAGGCTACAAAGGCTCTA-AGAAAATACAAAGTTCACGCAGTTGTAGCC 750
Query 949 AATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAGCGGTAATGTTGTG 1008
||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 751 AATGAGCTATCAACGCGTAAGGAAGAGGTTGTGGTTGTTTCAAGCAGTGGTAATGTTGTG 810
Query 1009 GTGAGACGTGA-TAGCAATAAGCCGGAATCTATCGTAGAAGATAATCTCATTCGTCTCCT 1067
|| ||||| || | | | |||||| |||||||| || ||||||||||||||||||||| |
Sbjct 811 GTTAGACGCGAATGGGA-TAAGCCTGAATCTATTGTTGAAGATAATCTCATTCGTCTCAT 869
Query 1068 CGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110
|||||| ||||||||||||||||||||||||| || || ||||
Sbjct 870 CGTAGACCGACATTCAACATACATCAAAGAATATCACAGTTGA 912
> Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1
Length=443
Score = 106 bits (57), Expect = 5e-22
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 9 GTTTGGTAATTAGGTTATCTTATAAAGCTAATCCTTCT-C-TCACACTGACAATCGTCGT 66
|||| ||||||||||||||| ||| ||||||| ||||| | |||| |||||||||||||
Sbjct 1 GTTTTGTAATTAGGTTATCTGATAGAGCTAATTCTTCTCCTTCACTGTGACAATCGTCGT 60
Query 67 TATCAAGGTGATTTCTTTCTCT 88
||||||||||||||||||||||
Sbjct 61 TATCAAGGTGATTTCTTTCTCT 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5