BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12380.1
Length=2871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920074 jgi|Araly1|920074|scaffold_101355.1 3801 0.0
Ahg475065 jgi|Araly1|475065|fgenesh2_kg.2__195__AT1G62870.1 952 0.0
> Ahg920074 jgi|Araly1|920074|scaffold_101355.1
Length=2419
Score = 3801 bits (2058), Expect = 0.0
Identities = 2314/2435 (95%), Gaps = 27/2435 (1%)
Strand=Plus/Plus
Query 232 AGAAAC-tttttttCTTTCTTGATGGCGACGACTAACGCTCACACGGCGACTCAACAGAc 290
|||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AGAAACTTTTTTTTC-TTC-TGATGGCGACGACTAACGCTCACACGGCGGCTCAACAG-- 56
Query 291 accaccaccaccacctcctcctcctccagctcctgctcctccGGCGATGGATGGGTTAAC 350
| | |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 57 ------A-CTCCACCTCCTCCTCCTCCAGCACCTGCTCCTCCGGCGATCGATGGGTTAAC 109
Query 351 AACAGACGAGCTAACAGCAAAAGCATTAAACAAGAGATACGAAGGTTTAATGACGGTGAG 410
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 110 AACAGACGAGCTAACAGCAAAAGCTTTAAACAAGAGATACGAAGGTTTAATGACGGTGAG 169
Query 411 AACAAAAGCAGTGAAAGGTAAAGGCGCGTGGTATTGGACTCATCTTGAACCAATCCTCGT 470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 170 AACAAAAGCAGTGAAAGGTAAAGGCGCGTGGTATTGGACTCATCTTGAACCTATCCTCGT 229
Query 471 ACGCAACACCGACACTGGTCTCCCTAAAGCCGTGAAGCTTCGTTGTTCTTTATGCGACGC 530
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 230 ACGCAACACCGACACTGGTCTCCCTAAAGCCGTGAAGCTCCGTTGTTCTCTATGCGACGC 289
Query 531 CGTTTTCTCCGCCTCTAATCCTTCACGCACTGCCTCTGAGCATCTCAAACGCGGCACGTG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 290 CGTTTTCTCCGCCTCTAATCCTTCACGCACTGCCTCTGAGCATCTCAAACGCGGCACTTG 349
Query 591 TCCTAATTTCAACTCTGTTACTCCCATTTCCACCATCACTCCTTCTCCTACCTCTTCCTC 650
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCCCAATTTCAACTCCGTTACTCCCATTTCCACCATCACTCCTTCTCCTACCTCTTCCTC 409
Query 651 TTCCTCTCCTCAAACTCATCACCGGAAACGTAACTCCTCCGGCGCTGTCACCACCGC-GA 709
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 410 TTCCTCTCCTCAAACTCATCACCGGAAACGCAACTCCTCCGGCGCTGTCACCACCGCTG- 468
Query 710 TTCCTTCTCGGCTTAACCCTCCTCCCATCGGAGGCTCTTATCACGTCACGCCGATAACCG 769
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTCCTTCTCGGCTTAATCCTCCTCCCATCGGAGGCTCTTATCACGTCACGCCGATAACCG 528
Query 770 TTGTTGATCCTTCTAGATTCTGCGGCGGAGAGTTGCATTATTCAACTCCTCCGCCGCCGC 829
| ||||||||||| || || ||||||||||||||||||||| ||||||| ||||||||
Sbjct 529 TCGTTGATCCTTCGAGGTTTTGCGGCGGAGAGTTGCATTATACAACTCC---GCCGCCGC 585
Query 830 AGCATTTGATGCTCTCCGGTGGAAAAGATGACTTGGGTCCTTTAGCTATGCTTGAAGACA 889
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 586 AGCATTTGATGCTCTCCGGTGGAAAAGACGATTTGGGTCCTTTAGCTATGCTTGAAGACA 645
Query 890 GTGTGAAGAAGCTTAAGAGTCCTAAACCGTCGCAGACTCAGTCTCTTACCAGATCGCAGA 949
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 646 GTGTGAAGAAGCTTAAGAGTCCTAAACCGTCGCAGACGCAGTCTCTTACCAGATCGCAGA 705
Query 950 TAGAGTCAGCTTTAGATTCTCTCTCTGATTGGGTCTTCGAGTCCTGCGGCTCTGTTTCTC 1009
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 706 TAGAGTCAGCTTTAGATTCTCTCTCTGATTGGGTCTTCGAATCTTGCGGCTCTGTTTCTC 765
Query 1010 TCTCGGGTCTTGAGCATCCAAAGTTTCGAGCTTTTTTAACACAAGTTGGTTTACCAATCA 1069
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 766 TCTCGGGTCTTGAGCATCCAAAGTTTCGAGCTTTTTTAACCCAAGTGGGTTTACCAATCA 825
Query 1070 TCTCCAAGAGAGATTTCGCCACCACGAGATTGGACTTGAAGCACGAGGAAGCCAGAGCAG 1129
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 826 TCTCCAAGAGAGATTTCGCCACCACGAGATTGGACTTGAAGTACGAGGAAGCTAGAGCAG 885
Query 1130 AGGCTGAATCGAGAATCAGAGACGCAATGTTCTTCCAAATCTCATCGGACGGTTGGAAAC 1189
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 886 AGGCTGAATCAAGAATCAGAGACGCAATGTTCTTCCAAATCGCATCGGACGGTTGGAAAT 945
Query 1190 CAGGAGAGTCCGGCGAGAGTCTTGTGAATTTGATTGTGAATTTACCAAACGGGACGAGTT 1249
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 946 CAGGAGAATCCGGCGAGAGTCTCGTGAATTTGATTGTGAATTTACCAAACGGGACGAGTT 1005
Query 1250 TGTACAGAAGAGCGGTACTTGTGAACGGAGCTGTGCCGTCTAACTACGCAGAGGAGGTCT 1309
|||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1006 TGTACAGAAGAGCGGTTCTGGTGAACGGAGCTGTGCCGTCGAACTACGCAGAGGAAGTCT 1065
Query 1310 TGTTGGAGACGGTGAAGGGTATTTGTGGAAATTCACCTCAGAGATGTGTTGGGATAGTCT 1369
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGTTGGAGACGGTGAAGGGCATTTGTGGAAATTCACCTCAGAGATGTGTTGGGATAGTCT 1125
Query 1370 CTGATAAGTTTAAGACCAAAGCACTGAGGAATCTGGAGAGTCAACATCAATGGATGGTGA 1429
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1126 CTGATAAGTTTAAGACCAAAGCACTGAGGAATCTTGAGAGTCAGCATCAATGGATGGTGA 1185
Query 1430 ATCTTTCTTGTCAGTTTCAGGGACTCAACAGTTTGATCAAAGATTTCGTAAAAGAGCTTC 1489
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATCTTTCTTGTCAGTTTCAAGGACTCAACAGTTTGATCAAAGATTTCGTAAAAGAGCTTC 1245
Query 1490 CTTTATTCAAATCCGTTTCACAAAACTGTGTGAGACTAGCTAAGTTCATCAATAACACCG 1549
|||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1246 CTTTGTTCAAATCTGTTTCACAAAACTGTGTGAGACTAGCCAAGTTCATCAACAACACGG 1305
Query 1550 CGCAGATACGTAACGCTCACTGTAAGTATCAGTTGCAGGAACATGGCGAATCGATAATGC 1609
|||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||
Sbjct 1306 CGCAGATACGAAACGCTCACTGTAAGTATCAGCTGCAGGAACATGGAGAATCTATAATGC 1365
Query 1610 TTAGGTTGCCTTTACATTGCTATTACGACGATGAACGTAGAAGTTgtagtagtagtagta 1669
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTAGATTGCCTGTACATTGCTATTACGACGATGAACGTAGAAGTTGTAGTAGTAGTAGTA 1425
Query 1670 gt-g--gtagta--A----CAAGGTTTGTTTCTACGAGCCGTTGTTTAATCTTCTTGAAG 1720
|| | |||||| | |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1426 GTAGTAGTAGTAGTAGTAACAAGGTTTGTTTCTTTGAGCCGTTGTTTAATCTTCTTGAGG 1485
Query 1721 ATGTGTTGAGTTCCGCTAGAGCAATTCAGTTGGTAGTACATGATGATGCTTGCAAGGTTG 1780
||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||
Sbjct 1486 ATGTGTTGAGTTCCGCTAGAGCAATCCAGTTGGTAATGCATGATGATGCTTGTAAGGTTG 1545
Query 1781 TTTTAATGGAGGATCATATGGCTAGGGAGGTTAGAGAGATGGTTGGTGACGAAGGGTTTT 1840
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1546 TTTTAATGGAGGATCATATGGCTAGGGAGGTTAGAGAGATGGTTGGGGATGAAGGGTTTT 1605
Query 1841 GGAACGAGGTAGAAGCGGTTCATGCTTTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAA 1900
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1606 GGAACGAGGTAGAGGCGGTTCACGCTTTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAA 1665
Query 1901 TAGAGGAAGAGAAGCTGCTTGTAGGGCAATGCTTACCTCTATGGGATGAGCTAAGAGCTA 1960
|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 1666 TAGAGGAAGAGAAGCTGCTTGTTGGGCAATGCCTACCGCTATGGGATGAGCTAAGAGCTA 1725
Query 1961 AGGTTAAAGATTGGGATTCTAAGTTTAATGTAGGGGAAGGACATGTGGAGAAAGTCGTTG 2020
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1726 AGATTAAAGATTGGGATTCTAAGTTTAATGTAGGAGAAGGACATGTGGAGAAACTCGTTG 1785
Query 2021 AGAGAAGATTCAAGAAGAGTTATCATCCGGCTTGGGCTGCGGCTTTTATACTTGACCCTC 2080
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1786 AGAGAAGATTCAAGAAGAGTTATCATCCGGCTTGGGCTGCGGCTTTCATACTCGACCCTC 1845
Query 2081 TTTACTTGATAAGAGATAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCAG 2140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1846 TTTACTTGATAAGAGATAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCCG 1905
Query 2141 AGCAAGAGAAAGATGTAGATAAGTTGATAACAAGGCTTGTGTCTAGAGATGAGGCACACA 2200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1906 AGCAAGAGAAAGATGTAGATAAGTTGATAACAAGGCTTGTGTCTAGAGACGAGGCACACA 1965
Query 2201 TTGCGTTGATGGAACTAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGG 2260
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 TTGCTTTGATGGAACTAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGG 2025
Query 2261 CGGTCCAAATGAAAGAGCGTGATCCGGTTTCCGGAAAGATGAGGATAGCGAATCCTCAAA 2320
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2026 CGGTCCAAATGAAAGAGCGTGACCCGATTTCCGGAAAGATGAGGATAGCGAATCCTCAAA 2085
Query 2321 GCAGTAGACTTGTTTGGGAGACGTATCTTAGCGAGTTCAGGTCACTAGGAAAAGTTGCAG 2380
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 2086 GCAGTAGACTTGTTTGGGAGACGTATCTTAGCGAATTCAGGTCGCTAGGGAAAGTTGCGG 2145
Query 2381 TAAGGCTCATTTTCCTCCACGCTACGACTGGAGGGTTCAAATGCAACTCCTCTCTTTTGA 2440
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 2146 TAAGGCTCATTTTCCTCCACGCGACTACTGGAGGGTTCAAATGCAATTCCTCTCTTTTGA 2205
Query 2441 AATGGGTAAACTCGAACGGGCGGTCACATGCAGCCGTTGATCGAGCTCAAAAGCTGATCT 2500
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2206 AATGGGTAAACTCGAACGGGCGGTCACATGCAGCCGTAGATCGAGCTCAAAAGCTGATCT 2265
Query 2501 TCATATCCGCTAACTCGAAATTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATG 2560
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 TCATATCCGCTAACTCGAAGTTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATG 2325
Query 2561 CAGAGCTTCTCGCTATGGCTAATGGTGACGACCATATGCTAAACGATGTTCTTGTCGATA 2620
| ||||| |||||||||||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 2326 CGGAGCTGCTCGCTATGGCTAACGGTGATGATCATCTGCTTAACGATGTTCTTGTCGATA 2385
Query 2621 CGTCCTCAGTGTGACATTTGAATCTCTTTTTTGAT 2655
| ||||| ||||||||||||||||||||||| |||
Sbjct 2386 CATCCTCGGTGTGACATTTGAATCTCTTTTT-GAT 2419
> Ahg475065 jgi|Araly1|475065|fgenesh2_kg.2__195__AT1G62870.1
Length=2661
Score = 952 bits (515), Expect = 0.0
Identities = 809/951 (85%), Gaps = 19/951 (2%)
Strand=Plus/Plus
Query 1696 GAGCCGTTGTTTAATCTTCTTGAAGATGT-GTTGAGTTCCGCTAGAGCAATTCAG-TTGG 1753
||||| |||| |||||||||||| ||||| || |||||||||||||| |||||| || |
Sbjct 1548 GAGCCATTGTATAATCTTCTTGAGGATGTACTT-AGTTCCGCTAGAGCGATTCAGCTT-G 1605
Query 1754 TAG-TACATGATGATGCTTGCAAGGTTGT-TTTAATGGAGGATCATATGGCTAGGGAGGT 1811
| | | |||||||||||||| |||| ||| || |||||||||||||||||||| |||||
Sbjct 1606 T-GATGCATGATGATGCTTGTAAGGCTGTGCTT-ATGGAGGATCATATGGCTAGAGAGGT 1663
Query 1812 TAGAGAGATGGTTGGTGACGAAGGGTTTTGGAACGAGGTAGAAGCGGTTCATGCTTTGAT 1871
| | || |||||||| || | |||||||||||||||||||| |||||| || | ||| |
Sbjct 1664 TGGTGAAATGGTTGGGGATGTCGGGTTTTGGAACGAGGTAGAGGCGGTTTATTCGTTGTT 1723
Query 1872 CAAGCTTGTTAAAGAGATGGCTCGGAGAATAGAGGAAGAGAAG-CTGCTT-GTAGGGCAA 1929
||||| |||| ||| ||||||||| ||||||| ||||||| | || || |||||||||
Sbjct 1724 GAAGCTCGTTAGAGAAATGGCTCGGCGAATAGAAGAAGAGAGGCCT--TTGGTAGGGCAA 1781
Query 1930 TGCTTACCTCTATGGGATGAGCTAAGAGCTAAGGTTAAAGATTGGGATTCTAAGTTTAAT 1989
|| || || || ||||| ||||| ||| | ||| | ||||||||| || | |||||||||
Sbjct 1782 TGTTTGCCGCTTTGGGACGAGCTGAGATCGAAGATAAAAGATTGGTATGCAAAGTTTAAT 1841
Query 1990 GTAGGGGAAG-GA--CATGTGGAGAAAG-TCGTTGAGAGAAGATTCAAGAAGAGTTATCA 2045
|||| |||| || || || ||| ||| |||||||||||||||||||||||||||||||
Sbjct 1842 GTAGTTGAAGAGAGGCAAGTTGAG-AAGATCGTTGAGAGAAGATTCAAGAAGAGTTATCA 1900
Query 2046 TCCGGCTTGGGCTGCGGCTTTTATACTTGACCCTCTTTACTTGATAAGAGATAGTAGCGG 2105
|||||||||||||| || ||||||||||| |||||||||||||||||||| || |||||
Sbjct 1901 CCCGGCTTGGGCTGCAGCGTTTATACTTGATCCTCTTTACTTGATAAGAGACAGCAGCGG 1960
Query 2106 AAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCAGAGCAAGAGAAAGATGTAGATAAGTT 2165
||| ||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 1961 AAAATATCTTCCTCCATTCAAGTGCTTGTCGCCAGAACAAGAGAAAGATGTTGATAAGTT 2020
Query 2166 GATAACAAGGCTTGTGTCTAGAGATGAGGCACACATTGCGTTGATGGAACTAATGAAATG 2225
|||||||||||| ||||||||||| |||||||| || ||| |||||||||| ||||||||
Sbjct 2021 GATAACAAGGCTAGTGTCTAGAGACGAGGCACATATCGCGATGATGGAACTGATGAAATG 2080
Query 2226 GAGAACCGAAGGGCTTGATCCTATGTATGCAAGGGCGGTCCAAATGAAAGAGCGTGATCC 2285
|||||| |||||||||||||| | |||||||||||||| |||||||| ||| | || ||
Sbjct 2081 GAGAACTGAAGGGCTTGATCCGGTTTATGCAAGGGCGGTTCAAATGAAGGAGAGAGACCC 2140
Query 2286 GGTTTCCGG-AAAGATGAGGATAGCGAATCCTCAAAGCAGTAGACTTGTTTGGGAGACGT 2344
|||| || ||| ||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 2141 TATTTCAGGGAAA-ATGAGGATAGCTAATCCACAAAGCAGTAGACTTGTTTGGGAAACTT 2199
Query 2345 ATCTTAGCGAGTTCAGGTCACTAGGAAAAGTTGCAGTAAGGCTCATTTTCCTCCACGCTA 2404
||||||| |||||||||||| | || | ||||||||| ||||| ||||| ||||| || |
Sbjct 2200 ATCTTAGTGAGTTCAGGTCATTGGGGAGAGTTGCAGTTAGGCTTATTTTTCTCCATGCAA 2259
Query 2405 CGACTGGAGGGTTCAAATGCAACTCCTCTCTTTTGAAATGGGTAAACTCGAACGGGCGGT 2464
| || | |||||||||||||| |||||| |||||| ||||||||| ||||| || | |
Sbjct 2260 CTTCTTGTGGGTTCAAATGCAATTCCTCTGTTTTGAGATGGGTAAATTCGAATGGAAGAT 2319
Query 2465 CACATGCAGCCGTTGATCGAGCTCAAAAGCTGATCTTCATATCCGCTAACTCGAAATTCG 2524
||| ||||||||| ||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 2320 CACGTGCAGCCGTGGATCGAGCTCAAAAGCTGATCTTTATATCCGCCAATTCAAAATTCG 2379
Query 2525 AAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATGCAGAGCTTCTCGCTATGGCTAATG 2584
|||||||||| |||||||||||||| || || || |||||||| ||||||||||||||||
Sbjct 2380 AAAGGAGAGACTTCTCAAACGAGGAAGAGAGAGACGCAGAGCTGCTCGCTATGGCTAATG 2439
Query 2585 GTGACGACCATATGCTAAACGATGTTCTTGTCGATACGTCCTCAGTGTGAC 2635
| || || || |||||||||||||||| ||||||| ||||| |||||||
Sbjct 2440 GCGAAGATGATGTGCTAAACGATGTTCTCATCGATACATCCTCGGTGTGAC 2490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108366747025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5