BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12390.1

Length=954
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920075 jgi|Araly1|920075|scaffold_101356.1                        763    0.0  


> Ahg920075 jgi|Araly1|920075|scaffold_101356.1
Length=457

 Score =  763 bits (413),  Expect = 0.0
 Identities = 445/460 (97%), Gaps = 3/460 (1%)
 Strand=Plus/Plus

Query  225  TTGTCGGAACCAAAAGGAGGAAGATGGGAGATATCTGGACATGGCTTATTTCCTTCTTCT  284
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    TTGTCGGAACCAGAAGGAGGAAGATGGGAGATATCTGGGCATGGCTTATTTCCTTCTTCT  60

Query  285  TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCGGATCTCGAGT  344
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  61   TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCCGATCTCGAGT  120

Query  345  TTGATTACATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTTTTACCGGAGT  404
            |||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct  121  TTGATTACATCAACCCTTACGACTCTGCCTCCAGAATAAATTCAGTGGTTTTACCTGAGT  180

Query  405  TCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGTTCATGACAC  464
            ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  TCATTGTGCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGATCATGACAC  240

Query  465  TCTTATGTCTCCCCTATCTATACTACAACTTCCATCTTTACTCGAAGCGACAACACTTAG  524
            |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct  241  TCTTATGTCTCCCCTATCTATACTACAACTTCCAACTTTACTCGAAACGACAACACTTGG  300

Query  525  TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC  360

Query  585  TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG  420

Query  645  ATGATTACGAGGACTGACTAATGAAGAAGACATGGTCCAT  684
            ||||||||||||||||||||||||| ||  ||||||||||
Sbjct  421  ATGATTACGAGGACTGACTAATGAA-AA--CATGGTCCAT  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35416189893


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5