BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12390.1 Length=954 Score E Sequences producing significant alignments: (Bits) Value Ahg920075 jgi|Araly1|920075|scaffold_101356.1 763 0.0 > Ahg920075 jgi|Araly1|920075|scaffold_101356.1 Length=457 Score = 763 bits (413), Expect = 0.0 Identities = 445/460 (97%), Gaps = 3/460 (1%) Strand=Plus/Plus Query 225 TTGTCGGAACCAAAAGGAGGAAGATGGGAGATATCTGGACATGGCTTATTTCCTTCTTCT 284 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 TTGTCGGAACCAGAAGGAGGAAGATGGGAGATATCTGGGCATGGCTTATTTCCTTCTTCT 60 Query 285 TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCGGATCTCGAGT 344 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 TCCTCATCGCTCTTGTCGGAATCATCGTCTATCAGCTTGTTTGCTTAGCCGATCTCGAGT 120 Query 345 TTGATTACATCAACCCTTACGACTCTGCGTCGAGAATAAACTCAGTGGTTTTACCGGAGT 404 |||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||| Sbjct 121 TTGATTACATCAACCCTTACGACTCTGCCTCCAGAATAAATTCAGTGGTTTTACCTGAGT 180 Query 405 TCATTGTTCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGTTCATGACAC 464 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 TCATTGTGCAAGGAGTTCTATGCGTATTCTACCTCCTAACAGGACACTGGATCATGACAC 240 Query 465 TCTTATGTCTCCCCTATCTATACTACAACTTCCATCTTTACTCGAAGCGACAACACTTAG 524 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 241 TCTTATGTCTCCCCTATCTATACTACAACTTCCAACTTTACTCGAAACGACAACACTTGG 300 Query 525 TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TAGATGTCACCGAGATCTTCAATTTGCTTAACTGGGAAAAGAAGAAACGGCTGTTCAAGC 360 Query 585 TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTGCTTACATTGTCCTTAACCTCTTTCTCACTATCTTCTGGATGATTTATTCGGCGCTGG 420 Query 645 ATGATTACGAGGACTGACTAATGAAGAAGACATGGTCCAT 684 ||||||||||||||||||||||||| || |||||||||| Sbjct 421 ATGATTACGAGGACTGACTAATGAA-AA--CATGGTCCAT 457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35416189893 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5