BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12400.1

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1         477    4e-134


> Ahg471390 jgi|Araly1|471390|fgenesh2_kg.1__1344__AT1G12400.1
Length=443

 Score =  477 bits (258),  Expect = 4e-134
 Identities = 378/429 (88%), Gaps = 36/429 (8%)
 Strand=Plus/Plus

Query  1    GTTTTGTAATTAGGTTATCTTATAAAGCTAATCCTTCTCTCCTTTACTGTGACAATAATC  60
            |||||||||||||||||||| ||| ||||||| | | ||||||| ||||||||   ||||
Sbjct  1    GTTTTGTAATTAGGTTATCTGATAGAGCTAATTC-T-TCTCCTTCACTGTGAC---AATC  55

Query  61   GTCGTTATCAAGGTGATTTCTTTCTCTGCCTCAAACATCGCTTACCCTCTTGATTGATTC  120
            |||||||||||||||||||| || |||  ||    | |   ||   |||     ||   |
Sbjct  56   GTCGTTATCAAGGTGATTTC-TT-TCT--CT----C-T---TT---CTC-----TG---C  92

Query  121  CTCCAATCTTCTTCGTGTGGTTTCACAGGTTTTAC--TTATGGTTAATGCAATCAAAGGA  178
            | |||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||
Sbjct  93   C-CCAATCTTCTTCGTGTGGTTTCACAGTTTTTACAGGTATGGTTAATGCAATCAAAGGA  151

Query  179  GTGTTCGTCTCTTGCGATATTCCGATGACACAATTCATAGTGAACATGAACAATTCGATG  238
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  GTGTTCATCTCTTGCGATATTCCGATGACACAATTCATAGTGAACATGAACAATTCGATG  211

Query  239  CCTCCGTCTCAGAAATTCATAATTCATGTACTTGATAGTACTCACTTGTTCGTGCAACCA  298
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  212  CCTCCGTCTCAGAAATTCATAATTCATGTACTTGATAGTACTCACTTGTTTGTGCAGCCA  271

Query  299  CATGTAGAGCAGATGATCCGCAGCGCCATTTCTGATTTTAGAGATCAAAACTCTTACGAG  358
            ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  272  CATGTTGAGCAGATGATTCGCAGTGCCATTTCTGATTTTAGAGATCAAAACTCTTACGAG  331

Query  359  AAGCCCACTTCTTAGATCACATCACATCACACT----TGCTTCTTGTTTTTCTTTCATTT  414
            ||||||||||||||||||| |||||||||||||    |||||||| ||| || |||||||
Sbjct  332  AAGCCCACTTCTTAGATCA-ATCACATCACACTCGCATGCTTCTTCTTTGTCATTCATTT  390

Query  415  GATTCAAAT  423
            |||||||||
Sbjct  391  GATTCAAAT  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22187537694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5