BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12410.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471391 jgi|Araly1|471391|fgenesh2_kg.1__1345__AT1G12410.1 1502 0.0
> Ahg471391 jgi|Araly1|471391|fgenesh2_kg.1__1345__AT1G12410.1
Length=947
Score = 1502 bits (813), Expect = 0.0
Identities = 877/908 (97%), Gaps = 4/908 (0%)
Strand=Plus/Plus
Query 23 aaaacaaacaaaaaaTCTAGTGTTCGGCTCTAACACGCTCGACGACCATGGCGGTCTCGT 82
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAACAAAAAATC-AGTGTTCGGCTCTAACACGCTCGACGACCATGGCGGTCTCGT 59
Query 83 TTAATACAACGCTTCACCAGCCTTCTCTGAGTCCGAGCTGTAGCATCAAGCTTTATTCTG 142
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 TTAATACAACGCTTCACCAGCCTTCTCTGAGTCCGAGTTGTAGCATCAAGCTTTATTCTG 119
Query 143 GGTTAAAGCCTCAATCTGCAAGCTTTTTGGCAAGTGGGTATCAGAATTTGAACAAGGAGT 202
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 GGTTAAAGCCTCAATCTGCAAGCTTTTTGGCAAGTGGGTATCAGAATTTGAATAAGGAGT 179
Query 203 TCTATGGAAGAGTTTATAAGAGTCTGCAATCTGGGACTGGGAAAGCGAGCAGGTCACGGG 262
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTATGGAAGAGTTCATAAGAGTCTGCAATCTGGGACTGGGAAAGCGAGCAGGTCACGGG 239
Query 263 TAAAGATGATGCCAATAGGAACACCGAGAGTACCCTACAGAAACCGAGAAGAAGGGACTT 322
| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 240 TTAAGATGATGCCAATAGGAACACCGAGAGTGCCTTACAGAAACCGAGAGGAAGGCACTT 299
Query 323 GGCAATGGGTTGATATATGGAATGCCCTTTATCGAGAGCGTGTAATCTTCATTGGACAAA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCAATGGGTTGATATATGGAATGCCCTTTATCGAGAGCGTGTAATCTTCATTGGACAAA 359
Query 383 ACATTGATGAAGAGTTTAGCAACCAGATATTAGCAACCATGTTGTACCTTGATACTCTTG 442
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 ACATTGATGAAGAGTTTAGCAACCAGATATTAGCAACCATGTTGTACCTCGATACTCTTG 419
Query 443 ATGACTCGAGGAGGATTTATATGTACCTAAATGGTCCGGGTGGTGATCTTACTCCAAGTC 502
||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 420 ATGACTCAAGGAGGATTTATATGTACCTAAATGGTCCAGGCGGCGATCTTACTCCAAGTC 479
Query 503 TAGCCATCTATGATACAATGAAGAGCTTGAAAAGTCCGGTTGGGACACATTGCGTTGGGC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAGCCATCTATGATACAATGAAGAGCTTGAAAAGTCCGGTTGGGACACATTGCGTTGGGC 539
Query 563 TTGCTTACAACCTTGCAGGTTTTCTTCTTGCGGCTGGAGAAAAGGGTCACCGATTTGCGA 622
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 TTGCTTATAACCTTGCAGGTTTTCTTCTTGCGGCGGGAGAAAAGGGTCACCGATTTGCGA 599
Query 623 TGCCATTATCAAGAATCGCCCTCCAGTCACCAGCTGGTGCAGCCCGTGGTCAGGCTGATG 682
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TGCCATTGTCAAGAATCGCCCTCCAATCACCAGCTGGTGCAGCCCGTGGTCAGGCTGATG 659
Query 683 ATATCCAAAATGAAGCAAAAGAGCTTTCAAGGATAAGAGACTACCTCTTCAATGAACTAG 742
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 ATATCCAAAATGAGGCAAAAGAGCTTTCAAGGATAAGAGATTACCTCTTCAATGAACTAG 719
Query 743 CCAAGAATACAGGCCAGCCTGCGGAAAGGGTCTTCAAAGACTTGAGCCGGGTGAAAAGGT 802
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCAAGAATACTGGCCAGCCTGCGGAAAGGGTCTTCAAAGACTTGAGCCGGGTGAAAAGGT 779
Query 803 TCAATGCAGAGGAAGCAATCGAGTATGGACTTATTGATAAGATTGTTAGACCACCGCGCA 862
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAATGCAGAAGAAGCTGTCGAGTATGGACTTATTGATAAGATTGTTAGACCACCGCGCA 839
Query 863 TCAAAGAAGACGCTCCTCGCCAAGACGAAAGCGCAGGGCTAGGCTAGTCTTTTTGTTTGT 922
||||||||||||||||||||||||||||||||||||| || |||||||||| | | ||||
Sbjct 840 TCAAAGAAGACGCTCCTCGCCAAGACGAAAGCGCAGGTCTCGGCTAGTCTTGT-GATTGT 898
Query 923 --TTGTTA 928
||||||
Sbjct 899 GATTGTTA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5