BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12423.1 Length=120 Score E Sequences producing significant alignments: (Bits) Value Ahg920079 jgi|Araly1|920079|scaffold_101360.1 158 1e-38 > Ahg920079 jgi|Araly1|920079|scaffold_101360.1 Length=231 Score = 158 bits (85), Expect = 1e-38 Identities = 107/117 (91%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 1 ATGACGTGGCTCCCACCGGTTACCTATTACCGTCCGTTCCCGTTTCCGGCGGAGAATCGT 60 ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 21 ATGCCGTGGCTCCCACCGGTTACCTATTACCGGCCGTTCCCATTTCCGGCGGAGAATCGT 80 Query 61 TCACATTTTCCCGCTAAATCCGACGTGGAAAGACAGAACAAGAGACAAAATAATTTT 117 ||||||||||||||||| || ||||||||||||||||||| ||| || ||||||| Sbjct 81 ACACATTTTCCCGCTAAAACCTACGTGGAAAGACAGAACAAAAGA-AA--TAATTTT 134 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 3745651434 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5