BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12423.1

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920079 jgi|Araly1|920079|scaffold_101360.1                        158    1e-38


> Ahg920079 jgi|Araly1|920079|scaffold_101360.1
Length=231

 Score =  158 bits (85),  Expect = 1e-38
 Identities = 107/117 (91%), Gaps = 3/117 (3%)
 Strand=Plus/Plus

Query  1    ATGACGTGGCTCCCACCGGTTACCTATTACCGTCCGTTCCCGTTTCCGGCGGAGAATCGT  60
            ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  21   ATGCCGTGGCTCCCACCGGTTACCTATTACCGGCCGTTCCCATTTCCGGCGGAGAATCGT  80

Query  61   TCACATTTTCCCGCTAAATCCGACGTGGAAAGACAGAACAAGAGACAAAATAATTTT  117
             ||||||||||||||||| || ||||||||||||||||||| ||| ||  |||||||
Sbjct  81   ACACATTTTCCCGCTAAAACCTACGTGGAAAGACAGAACAAAAGA-AA--TAATTTT  134



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3745651434


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5