BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12430.2
Length=3224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471393 jgi|Araly1|471393|fgenesh2_kg.1__1347__AT1G12430.1 3825 0.0
Ahg482593 jgi|Araly1|482593|fgenesh2_kg.4__1653__AT2G36200.1 62.1 3e-08
> Ahg471393 jgi|Araly1|471393|fgenesh2_kg.1__1347__AT1G12430.1
Length=2981
Score = 3825 bits (2071), Expect = 0.0
Identities = 2374/2515 (94%), Gaps = 41/2515 (2%)
Strand=Plus/Plus
Query 696 ACATATACACTTGGGCAACTGGGGGAAGAAGATGTCGCTGATCGTGGAATTATGGTCCGT 755
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 490 ACATATACACTTGGGCAGCTTGGGGAAGAAGATGTCGCTGATCGTGGAATAATGGTCCGT 549
Query 756 GCTATGGAAGATATTTTAGCTGAAGTTTCGTTGGAGACGGATTCTATATCTGTCTCCTAT 815
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 550 GCTATGGAGGATATTTTAGCTGAAGTGTCGTTGGAGACGGATTCTATATCTGTCTCCTAT 609
Query 816 TTGCAGCTTTATATGGAGACTGTACAAGACCTTCTTGATCCGTCTAATGATAACATTGCT 875
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 610 TTGCAGCTTTATATGGAGACTGTACAAGATCTTCTTGATCCGTCTAATGATAACATTGCT 669
Query 876 ATAGTTGAGGACCCGAAAAATGGAGATGTGTCTCTTCCAGGTGCCACTTTGGTTGAAATT 935
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 670 ATAGTTGAGGACCCGAAAAATGGAGATGTTTCTCTTCCAGGTGCCACTTTGGTCGAAATT 729
Query 936 AGGGATCAACAAAGCTTCTTGGAACTACTGCAACTCGGAGAAGCTCACCGGTTTGCTGCT 995
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGGGATCAACAAAGCTTCCTGGAACTACTGCAACTCGGAGAAGCTCACCGGTTTGCTGCT 789
Query 996 AATACCAAATTGAACACCGAGTCATCCCGTAGTCATGCTATTTTAATGGTAAATGTTAGG 1055
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 790 AATACCAAACTGAACACCGAGTCATCCCGTAGTCATGCTATCTTAATGGTAAATGTCAGG 849
Query 1056 CGCTCTATGAAAACAAGAGATGGTTTGTCAAGTGAAAGTAATGGAAACTCCCATATGACT 1115
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 850 CGCTCTTTGAAAACAAGAGATGGCTTGTCAAGTGAAAGTAATGGAAACTCCCATATGACT 909
Query 1116 AAGTCTCTCAAGCCTCCTGTTGTCCGGAAAGGAAAGTTAGTTGTGGTGGATCTCGCTGGG 1175
|| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 910 AAATCTCTTAAGCCTCCTGTTGTCCGGAAGGGAAAATTAGTCGTGGTGGATCTTGCTGGA 969
Query 1176 TCAGAACGTATCAATAAATCAGGAAGTGAGGGACATACACTAGAGGAAGCCAAATCTATC 1235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TCGGAACGTATCAATAAATCAGGAAGTGAGGGACATACACTAGAGGAAGCCAAATCTATC 1029
Query 1236 AATCTCTCTCTGAGTGCACTGGGGAAATGCATCAATGCACTTGCTGAGAATAGTTCTCAT 1295
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1030 AATCTATCTCTGAGTGCACTGGGGAAATGCATCAATGCACTTGCTGAAAATAGTTCTCAT 1089
Query 1296 GTTCCATTCCGTGATTCAAAGCTAACTAGATTACTTAGAGATTCATTTGGAGGCACTGCA 1355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1090 GTTCCATTCCGTGATTCAAAGCTAACTAGATTGCTTAGAGATTCATTTGGAGGCACTGCA 1149
Query 1356 AGAACCTCCTTAGTTATTACAATTGGTCCATCACCACGACATCGAGGAGAGACAACAAGC 1415
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1150 AGGACCTCCTTAGTTATTACAATTGGTCCATCACCACGACATCGAGGGGAGACAACAAGC 1209
Query 1416 ACTATAATGTTTGGGCAGAGGGCAATGAAAGTGGAAAATATGGTGAAGATAAAGGAAGAG 1475
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1210 ACTATAATGTTTGGGCAAAGGGCTATGAAAGTGGAAAATATGGTGAAGTTAAAGGAAGAG 1269
Query 1476 TTTGATTACAAAAGCTTGTCTAGAAGACTTGAAGTACAACTAGACAATCTAATTGAGGAA 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1270 TTTGATTACAAAAGCTTGTCTAGAAGACTTGAAGTACAACTAGACAATCTAATCGAGGAA 1329
Query 1536 AATGAAAGACAGCAGAAAGCATTCGTTGATGAAATCGAAAGAATAACCGTAGAGGCGCAT 1595
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1330 AATGAAAGGCAGCAGAAAGCATTCGTTGATGAAATCGAAAGAATAACCGTAGAAGCTCAT 1389
Query 1596 AACCAAATTTCTGAGGCTGAAAAGAGATATGCCAATGCTCTAGAGGACGAAAAGCTAAGG 1655
|||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1390 AACCAAATATCCGAGGCTGAAAAGAGATATGCCAATGCACTAGAGGAGGAAAAGCTAAGG 1449
Query 1656 TATCAGAATGATTACATGGAATCAATAAAGAAGCTTGAGGAGAATTGGTCAAAGAATCAG 1715
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TATCAGAATGATTACATTGAATCAATAAAGAAGCTTGAGGAGAATTGGTCAAAGAATCAG 1509
Query 1716 AAAAAGCTTGCTGCTGAAAGACTTGCCCTTGGAGAGAAAAATGGCCTAGACATCACAT-- 1773
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1510 AAAAAGCTGGCTGCTGAAAGACTTGCACTTGGAGAAAAAAATGGCCTAGACATCACATCA 1569
Query 1774 CA----AATGGAA-A---CAG--ATCAATAGCCCCAGCCTTAGAGGAAGTCTCTGAACTG 1823
|| |||| || | | | |||||||||||||||| |||| |||||||||||||||
Sbjct 1570 CACGGCAATGTAACATCTCTGTTATCAATAGCCCCAGCCATAGAAGAAGTCTCTGAACTG 1629
Query 1824 AAAAAGTTGCTTCAGAAAGAAGCTCAATCAAAGATGGCGGCTGAAGAGGAAGTGAATAGG 1883
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1630 AAAAAGTTGCTTCAGAAAGAAGCTCAATCAAAGATGGCTGCTGAAGAGGAAGTGAATAGG 1689
Query 1884 CTTAAACATCAACTCAATG-AGTTCAAGAAAGTCGAAGCATCAGGGAATTCTGAGATCAT 1942
|||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1690 CTTAAACATCAACTCACCGAATTTCAA-AAAGTCGAAGCATCAGGGAATTCTGAGATCAT 1748
Query 1943 GAGACTCCATAAGATGTTGGAAAATGAGACTCAACAAAAGGAAAAACTAGAAGGGGAAAT 2002
||||||||| |||||||||||||||||||| || ||||| ||| ||||||||||||||||
Sbjct 1749 GAGACTCCACAAGATGTTGGAAAATGAGACACAGCAAAAAGAAGAACTAGAAGGGGAAAT 1808
Query 2003 AGCGACATTGCATTCTCAACTACTGCAATTGAGTCTTACTGCTGACGAGACTCGACGAAA 2062
||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1809 AGCAACACTGCATTCTCAACTACTGCAATTGAGTCTTACTGCTGATGAGACTCGACGAAA 1868
Query 2063 CCTTGAGCAACATGGTTCAGAGAAAACTTCTGGTGCTAGAGATTCTTTAATGTCTCAGTT 2122
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1869 CCTTGAGCAACATGGTTCAGAGAAAACTTCTAGTGCTCGAGATTCTTTAATGTCTCAGTT 1928
Query 2123 AAGACTTCCTCAAATCCAAGATCCAGGAAATGCTGAGAAACCTCCTGTAGCTAGATTGTT 2182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 AAGACTTCCTCAGATCCAAGATCCAGGAAATGCTGAGAAACCTCCTGTAGCTAGATTGTT 1988
Query 2183 TGAACAAGTGGGGTTGCAAAAGATATTGTCTCTGCTTGAAGCTGAAGATGCTGATGTGAG 2242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1989 TGAACAAGTGGGGTTGCAAAAGATCTTGTCTCTGCTTGAAGCTGAAGATGCTGATGTGAG 2048
Query 2243 GATTCATGCTGTCAAAGTGGTAGCAAATCTGGCTGCCGAAGAGGCAAATCAGCAGCAAAT 2302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2049 GATTCATGCTGTCAAAGTGGTAGCAAATCTGGCTGCCGAAGAGGCAAATCAGCAACAAAT 2108
Query 2303 TGTGGAAGCTGGTGGTCTTACTTCCTTGTTGATGCTTCTGAAAAATACAGAAGATGAGAC 2362
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 2109 TGTGGAAGCTGGTGGTCTCACCTCCTTGTTGATGCTACTGAAGAATACAGAAGATGAGAC 2168
Query 2363 TATTCACAGAGTTGCTGCTGGTGCAATCGCAAATCTTGCAATGAATGAAACCAACCAGGA 2422
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2169 TATTCACAGAGTTGCTGCTGGTGCAATCGCCAATCTTGCAATGAATGAAACTAACCAGGA 2228
Query 2423 GCTGATCATGGATCAAGGAGGCATTGGTTTATTGTCATCAACAGCAGCCAATGCTGAAGA 2482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2229 GCTGATCATGGATCAAGGAGGCATCGGTTTATTGTCATCAACAGCAGCCAATGCTGAAGA 2288
Query 2483 TCCTCAGACCCTTAGGATGGTTGCCGGAGCCATTGCAAATCTATGTGGAAACGATAAATT 2542
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 2289 TCCTCAAACCCTTAGGATGGTTGCTGGAGCAATTGCAAATCTTTGTGGAAACGATAAATT 2348
Query 2543 GCAGACAAAACTAAGATCAGAAGGAGGTATTGCAGCTTTGTTGGGAATGGTCAGATGTGG 2602
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2349 GCAGACAAAACTAAGATCAGAAGGAGGTATTGCGGCTTTGTTGGGAATGGTGAGATGTGG 2408
Query 2603 ACATCCTGATGTTCTTGCACAAGTTGCTCGCGGGATCGCAAACTTTGCGAAATGCGAGTC 2662
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2409 ACATCCTGATGTTCTTGCACAAGTTGCTCGTGGGATCGCAAACTTTGCGAAATGCGAGTC 2468
Query 2663 AAGAGCATCAACACAAGCAGGAACTAAAAGAGGGAAATCACTATTAATAGAAGACGGTGC 2722
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469 AAGAGCATCAACAC-A--AGGAACTAAAAGAGGGAAATCACTATTAATAGAAGACGGTGC 2525
Query 2723 ACTCTCCTGGATTGTACAAAACGCCAAAACCGAAACTGCAGCCATAAGGAGACACATTGA 2782
|||||| |||||||||||||| |||||||||||||| |||||||||||| | ||||||||
Sbjct 2526 ACTCTCTTGGATTGTACAAAATGCCAAAACCGAAACCGCAGCCATAAGGCGTCACATTGA 2585
Query 2783 ATTAGCTCTTTGTCACTTAGCACAACATGAAGGGAATGCGAAAGAGATGGTGAAGGAAGG 2842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2586 ATTAGCTCTTTGTCACTTAGCACAACATGAAGGGAATGCGAAAGAGATGGTGAAGGAAGG 2645
Query 2843 AGCAATGTGGGAGCTGGTGAGGATCTCAAGAGATTGTTCGAGAGAAGACATAAGAAGTCT 2902
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 2646 AGCAATATGGGAGCTGGTGAGGATCTCAAGAGACTGTTCAAGAGAAGACATAAGATGTCT 2705
Query 2903 TGCTCATAGAACTCTCACTTCAAGTCCTACTTTCCTCACTGAACTTAGACGTCTCCGTGT 2962
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2706 TGCTCATAGAACTCTCACTTCAAGTCCTACTTTTCTCACTGAACTCAGACGTCTCCGTGT 2765
Query 2963 TGATATCCGGTAAACCGGTTTAATGCCTAACTTAACCGAACCGAATTGCGGAATAAAGAA 3022
||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2766 TGACATCCGGTAAGCCGGTTTAACGCCTAACTTAACCGAACCGAATTGCGGAATAAAGAA 2825
Query 3023 GGGTTAA--T-TC--AAAATTCAGAGAGACGAAGATATGTATGAttttgtttttacttat 3077
|| |||| | | ||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 2826 GGATTAAAATATTTTAAAATTCAGTGAGATGAAGATTTGTATGATTTTGTTTTTACTTAT 2885
Query 3078 gtttagggttgtttgtggggtttttcgtggctttggcatttctttttttttttGGGGTTG 3137
||||||| || || |||||||||||||||||||||| | || |||
Sbjct 2886 GTTTAGG-TT-TTC-----------CGTGGCTTTGGCATTTCTTTTTGT----GG--TTG 2926
Query 3138 GATGTGTATATTATTTTGGTGGGTTTTGTTTGTGTATATAGGACGTAGTATTGAA 3192
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2927 GATGTGTATATTATTTTGGTGCGTTTTGTTTGTGTAAATAGGACGTAGTATTGAA 2981
Score = 682 bits (369), Expect = 0.0
Identities = 454/494 (92%), Gaps = 10/494 (2%)
Strand=Plus/Plus
Query 6 CTTCACTCAActctttctctctctcttctctctAAATTTTTGCAATCTTCCCGAGAAATT 65
||||||||||| || ||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 1 CTTCACTCAACACTCTCTCTCTCTCTCCTCTCTCAATTTTTGCAATTTTCCCGAGAAATT 60
Query 66 AAACTCCGTGAAAGaaa-aaaaTTAAAGGAATTTTCTCGGGAACTCATAAAATTGTGGAA 124
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 61 AAACTCCGTGAAAGAAAGAAAATTAAAGGAATTTTCTCGGGAACTAATAAAATTGAGGAA 120
Query 125 ACACAAAAGAAGCTTCtttgttttttgatactctcccagagaatttgtttggtcgttttt 184
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct 121 ACACAAAAGAAGCTTCTTTG-TTTTTGATACTCTCCAAGAGAATTTGTTTGGTCTTTTTT 179
Query 185 ggatttatgcgttttttgAAGTCGAGAAATGTCAACGACTTCAGGAACCGGAGGTGTCAG 244
||||||||||| ||||||| || ||||||||||||||||||||||||||| | | |
Sbjct 180 GGATTTATGCG---TTTGAAGAAGAAAAATGTCAACGACTTCAGGAACCGGAGCTTTGAA 236
Query 245 TTACAGAAATGGAACTCAAAGAAGCTCACTCAGAACTCAGTCCTCTGCTTCTACTTCCTC 304
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 237 TTACAGAAATGGGACTCAAAGAAGCTCACTCAGAACTCAGTCCTCTACTTCTACTTCCTC 296
Query 305 CGGTGGCCAGAAAGCTTCTGTCAAATCCAAGTCAGTCCTTAGAAAAAGCAGCCCCGCCGC 364
|||||| |||||| |||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 297 CGGTGGTCAGAAATCTTCTGTCAAATCCAAGTCAGTGCTAAGAAAGAGCAGCCCCGCCGC 356
Query 365 ACTTGGTGGTGGTAGCTCT---AAGTCTGGAGGCGGTGGCGACGCCGGTGTTCCTGGAAG 421
|||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 357 ACTTGGTGGTGGCGGCTCTTCTAAGTCTGGAAGCGGTGGCGACGCCGGTGTTCCTGGGAG 416
Query 422 AGTTCGAGTAGCTGTTAGATTAAGGCC-ACGTAATGGTGAAGAATTGATTGCTGATGCAG 480
|||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
Sbjct 417 AGTTCGAGTAGCTGTTAGATTAAG-CCTACGCAATGGTGAGGAATTGATTGCTGATGCTG 475
Query 481 ATTTTGCTGATTGT 494
||||||||||||||
Sbjct 476 ATTTTGCTGATTGT 489
> Ahg482593 jgi|Araly1|482593|fgenesh2_kg.4__1653__AT2G36200.1
Length=3182
Score = 62.1 bits (33), Expect = 3e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 672 TATGGTCAGACTGGTACTGGTAAGACATATACA 704
|||||||||||||||||||||||||||||||||
Sbjct 314 TATGGTCAGACTGGTACTGGTAAGACATATACA 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121670060881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5