BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12450.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471395 jgi|Araly1|471395|fgenesh2_kg.1__1349__AT1G12450.1 1807 0.0
> Ahg471395 jgi|Araly1|471395|fgenesh2_kg.1__1349__AT1G12450.1
Length=1261
Score = 1807 bits (978), Expect = 0.0
Identities = 1199/1297 (92%), Gaps = 50/1297 (4%)
Strand=Plus/Plus
Query 2 AAGATTCTTTCTTCTAACCCCATTCGCTCTCTCCGATCA-ACACAA-CATTTGATCTAAC 59
||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||
Sbjct 1 AAGATTCTTTCTTCTAAACCCATTCGCTCTCTCCGATCACAAACAACCATTTGATCTAAC 60
Query 60 GGTTTAATTTTCTCGAGAAACCGAAGGAAAACAAACAGAGGTGCATAACGATTCTGACGG 119
||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||
Sbjct 61 GGTTTAATTTTCTCGAGAAACCGAAGG---A-AAACAGAGGTGCACAACGATTCTGCCGG 116
Query 120 AAACTTTTGAGATAttttttttAGAGCCAAAAGGATTCACtttttttGGTTTTATCTTCG 179
||||||||||||| |||| || ||||||||||||||||||||
Sbjct 117 TAACTTTTGAGATA----TTTT-------------TT---TTTTTTTGGTTTTATCTTCG 156
Query 180 ---C-ATCGATCTATGACGTACAGCAATGGCGTCGATGGGACGGTGCCTGAGCTGAAATT 235
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 157 TCTCGATCGATCTATGACGTACAGCAATGGCGTCGATGGTACGGTGCCTGAGCTGAAATT 216
Query 236 GAGAGTCGAAGAAGATTCCGATAATGGTGATTATCTGAAATTGAGAGGAGGATCAAATGA 295
||||||| ||||||||||| |||||||||||| | |||||||||||| |||| ||||
Sbjct 217 GAGAGTC---GAAGATTCCGAAAATGGTGATTATGTAAAATTGAGAGGAAGATCGGATGA 273
Query 296 AGAAGATGAAGGATCATCGGCGGAATCATCGAGATGTCCGATAGGATCGGTTACTTCTGT 355
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 274 AGAAGAAGAAGGATCATCGGCGGAATCATCGGGATGTTCGATAGGATCGGTTACTTCTGT 333
Query 356 CTGGTTCTGGGTGAAATTGATCTCCTTGGTCGTTTGTTTGGGTTCATTGGCCTTTGTTAT 415
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 334 CTGGTTCTGGGTGAAATTGATCTCCTTGGTCGTTTGTTTGGTTTCATTGGCTTTTGTAAT 393
Query 416 CATCAAATGGGTTGGTCCCTTTTTGATTGAAAAGGAGCTGATTCCATTTATAAATTGGGT 475
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 394 CATCAAATGGATTGGTCCGTTTTTGATCGAAAAGGAGCTGATTCCATTTATAAATTGGGT 453
Query 476 GAGAAACACATTCAGCATACCGGTTCTCGGTCTTCTACTATTTGCCTCAGTGGCATTGTT 535
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 454 GAGAAACACATTCAGCATTCCGGTTCTTGGTCTTCTACTCTTTGCCTCAGTGGCTTTGTT 513
Query 536 TCCAAGCATTCTTCTTCCTTCTTCCCCTTCCATGTGGATGGCTGGTCTTACATTTGGTTA 595
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 514 TCCAAGCATTCTTCTTCCTTCTTCTCCTTCCATGTGGATGGCTGGTCTTACATTTGGTTA 573
Query 596 TGGAAAAGGGTTTCT-TCTGATTTTATCAGCTGCTTCCATCGGTGTTACTCTTCCTTTCT 654
||||||||||||||| | ||||||||||||| || || ||||||||||||||||||||||
Sbjct 574 TGGAAAAGGGTTTCTAT-TGATTTTATCAGCAGCATCGATCGGTGTTACTCTTCCTTTCT 632
Query 655 TAATTGGACATCTCTTCCTCCACAAGATGCAAGAATGGTTGAAGAAATACCCTAAAAAAG 714
|||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 633 TAATCGGACATCTTTTCCTTCACAAGATGCAAGAATGGTTGAAGAAATACCCGAAAAAAG 692
Query 715 CAGCCATACTTAGAGCTGCTGGTGAAGGAACCTGGTTTCATCAGTTTCAAGCAGTCACAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CAGCCATACTTAGAGCTGCTGGTGAAGGAACCTGGTTTCATCAGTTTCAAGCAGTCACAC 752
Query 775 TAATCCGTGTCTCTCCATTTCCTTACATCATTTACAACTACTGCGCTTTAGCGACTGGAG 834
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 753 TAATCCGTGTCTCTCCATTCCCTTACATCATATACAACTACTGCGCATTAGCCACTGGAG 812
Query 835 TTCATTATGGTCCTTATATCTTAGGCTCTCTTGTTGGAATGGTTCCTGAGATCTTTGTCT 894
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TTCATTACGGTCCTTACATCTTAGGCTCTCTTGTTGGAATGGTTCCTGAGATCTTTGTCT 872
Query 895 CAATTTACACGGGTATAATGCTAAGGACACTAGCAGTTGCATCAGACACGAGACACACAC 954
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CAATTTACACGGGAATAATGCTAAGGACACTAGCAGTTGCATCAGACACGAGACACACAC 932
Query 955 TTTCGGTTGTGGAGATAGTCGTGAATGTTCTTGGCTTCTGTGTAACTGCGAGCGCGACTA 1014
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TGTCGGTTGTGGAGATAGTCGTGAATGTTCTTGGCTTCTGTGTAACTGCGAGCGCGACTA 992
Query 1015 TAGTCTGCACAATCTATGCGAAGAAGAAGCTAAGTGCGATGCAATCAGAGGACGTAGAGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TAGTCTGCACAATCTATGCGAAGAAGAAGCTAAGTGCGATGCAATCAGAGGACGTAGAGA 1052
Query 1075 CATTACAAAATCCAATACTTTATTAACTCTTTTCACCATGACCACAACATACCATCATCT 1134
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 1053 CATTACAAAATCCAATACTTTAATAACTCTTTTCACCAAGACCACAACATACCATC-T-- 1109
Query 1135 AACACGATCTTGAAATTGATAATATATA-A-T--Gtttttttttttt-ttt-GTTATTCT 1188
||||||||||||| |||||||||||||| | | ||||||||||||| ||| ||||||||
Sbjct 1110 AACACGATCTTGATATTGATAATATATATAATTTGTTTTTTTTTTTTGTTTTGTTATTCT 1169
Query 1189 TATTCATTTGAAAATGAATATTTATGTCT-TTTTCTCTTGTATATATGATATGTATCAAT 1247
||||||||||||| ||||||| ||||||| |||||||||||||||||| ||| |||
Sbjct 1170 TATTCATTTGAAAGTGAATATCTATGTCTCTTTTCTCTTGTATATATG-TAT----CAAC 1224
Query 1248 TGAATTTTGAAAATTTCCAATGTATATTTATTAGATC 1284
|||||||||||||| ||||||||||||||||||||||
Sbjct 1225 TGAATTTTGAAAATCTCCAATGTATATTTATTAGATC 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5