BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12460.1
Length=3289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920084 jgi|Araly1|920084|scaffold_101365.1 4076 0.0
Ahg475059 jgi|Araly1|475059|fgenesh2_kg.2__189__AT1G62950.1 2012 0.0
> Ahg920084 jgi|Araly1|920084|scaffold_101365.1
Length=2691
Score = 4076 bits (2207), Expect = 0.0
Identities = 2532/2692 (94%), Gaps = 9/2692 (0%)
Strand=Plus/Plus
Query 434 GGATCCGTTTATGAGCTGAATATGAGAAAGGTTCATCTTTTTCTGGTTTTGGTTCATTTC 493
|||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 2 GGATCCGTTTATGAGCTGAATATGAGAAAGATTCATCTTTTTCTTGTTTTGGTAAATTTC 61
Query 494 ATCTACATTTCAACTTCTCGCTCTGATTCCATCAGTGAACGAGACATTCTGCTTCAGTTC 553
|||||||||||| |||||| ||| | | |||| ||| ||||||||| |||||||||||
Sbjct 62 ATCTACATTTCATCTTCTCTCTCCCAGACAATCAATGAGCGAGACATTTTGCTTCAGTTC 121
Query 554 AAAGGCAGTATCAGTGACGATCCATACAACAGCTTGGCTTCTTGGGTTTCCGATGGTGAC 613
|||| |||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||
Sbjct 122 AAAGACAGTATCAGTGACGATCCGTACAACAGTTTGGCTTCTTGGGTCTCCGACGGTGAC 181
Query 614 CTCTGCAATAGCTTCAATGGAATCACTTGTAACCCACAAGGTTTCGTGGACAAAATCGTT 673
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTCTGCAATAGCTTCAATGGAGTCACTTGTAACCCACAAGGTTTCGTGGACAAAATCGTT 241
Query 674 CTGTGGAACACAAGTCTCGCCGGAACCTTAGCTCCGGGATTGTCAAATCTAAAGTTTATT 733
|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 242 CTTTGGAACACCAGTCTCGCCGGAACCCTAGCTCCGGGATTGTCAAATCTAAAGTTTGTT 301
Query 734 CGAGTTCTGAACTTGTTTGGCAACAGGTTTACAGGTAATTTACCGTTGGATTACTTC-AA 792
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 302 CGAGTTCTGACCTTGTTTGGCAACAGGTTTACAGGTAATTTACCGTTGGATTAC-TCAAA 360
Query 793 GTTGCAAACTTTGTGGACGATTAATGTTAGTTCCAATGCGTTGTCTGGTCCGATTCCGGA 852
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 361 GTTGCAAACTTTGTGGACGATTAATGTTAGTTCCAATGCGTTGTCTGGTACGATCCCGGA 420
Query 853 GTTTATTAGTGAATTGTCTAGCTTAAGGTTTCTAGACTTGTCTAAAAATGGTTTCACCGG 912
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GTTTATCGGTGAATTGTCTAGCTTAAGGTTTCTTGACTTGTCTAAAAATGGTTTCACCGG 480
Query 913 AGAGATTCCGGTTTCTCTGTTTAAGTTCTGTGACAAGACCAAATTTGTTTCACTGGCTCA 972
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 481 AGAGATTCCGGTTTCTCTGTTTAAGTTCTGTGAGAAGACCAAATTTGTTTCACTGTCTCA 540
Query 973 TAACAATATCTTTGGATCAATCCCTGCTTCAATTGTAAACTGTAACAACCTCGTAGGATT 1032
||||||| ||| |||||||||||||| | | || || |||||||||||||||||||||||
Sbjct 541 TAACAATCTCTCTGGATCAATCCCTGGTACGATCGTGAACTGTAACAACCTCGTAGGATT 600
Query 1033 TGATTTCTCTTACAATAATCTGAAGGGAGTGTTGCCGCCTAGGATTTGTGATATTCCTGT 1092
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 601 TGATTTCTCTTATAATAATCTGAAGGGAGTGTTACCGCCTAGGATTTGTGATATTCCGGT 660
Query 1093 GCTTGAATATATCTCAGTGAGAAACAATTTGTTGTCTGGTGATGTCTCTGAGGAGATACA 1152
|||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 661 GCTTGAGTATATCTTAGTGAGAAACAATTTGTTGTCTGGTGATGTCTTTGACGAGATAAA 720
Query 1153 GAAATGTCAGAGGTTGATTCTTGTTGATTTAGGAAGCAATTTGTTTCATGGATTAGCGCC 1212
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 721 GAAATGTCAGAGGTTGATTCTTGTCGATTTCGGAAGCAATTTGTTTCATGGATTAGCGCC 780
Query 1213 TTTTGCGGTTCTTACGTTCAAGAACATAACTTATTTCAATGTCTCTTGGAACCGATTTGG 1272
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 781 TTTTGAGGTCCTTACGTTCAAGAACATAACTTACTTCAATGTCTCTTGGAACCGGTTTGG 840
Query 1273 TGGTGAGATTGGAGAGATAGTTGATTGCAGTGAAAGTTTGGAGTTTTTGGATGCTTCGTC 1332
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGGGAGATTGGAGAGATAGTTGATTGCAGTGAAAGTTTGGAGTTTTTGGATGCTTCGTC 900
Query 1333 GAATGAGTTAACCGGTAGGATTCCTACTGGTGTTATGGGTTGCAAAAGTCTCAAGCTTTT 1392
|||||||||||| |||||||| || | ||||||| |||||||||||||||||||||||||
Sbjct 901 GAATGAGTTAACTGGTAGGATCCCAAATGGTGTTGTGGGTTGCAAAAGTCTCAAGCTTTT 960
Query 1393 GGATTTGGAGTCTAACAAGCTGAATGGAAGTATCCCGGGAAGTATTGGGAAGATGGAGAG 1452
||||||||||||||||||||||||||| |||||||| ||| |||| | |||||||||||
Sbjct 961 GGATTTGGAGTCTAACAAGCTGAATGGTAGTATCCCTGGAGGTATCGAGAAGATGGAGA- 1019
Query 1453 C-CTCTCAGTGATCAGATTAGGGAATAATTCTATAGATGGGGTGATACCAAGAGATATTG 1511
| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 1020 CGCTCTCGGTGATCAGATTAGGCAATAATTCTATAGATGGGGAGATACCAAGAGAGATTG 1079
Query 1512 GAAGTTTGGAGTTTCTACAGGTTTTGAATCTGCATAATCTCAATCTCATTGGTGAAGTTC 1571
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 GAAGTTTGGAGTTTCTACAAGTTTTGAATCTGCATAACCTCAATCTCATTGGTGAAGTTC 1139
Query 1572 CAGAGGATATATCCAATTGCAGAGTACTTCTTGAACTAGATGTTTCAGGGAATGATTTAG 1631
||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1140 CAGAGGATATATCTAATTGCAGAGTACTTCTTGAACTAGATGTTTCAGGTAATAATTTAG 1199
Query 1632 AAGGAAAGATCTCTAAGAAGCTATTAAACTTAACAAACATAAAGATTCTTGATCTGCATC 1691
||||| || || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1200 AAGGAGAGGTCCCTAAGAAGCTATTAAACTTAACAAACTTAGAGATTCTTGATCTGCATC 1259
Query 1692 GAAACCGTCTGAACGGAAGTATCCCACCTGAACTTGGAAACCTCTCCA-AAGTCCAGTTT 1750
|||||||||| || |||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1260 GAAACCGTCTCAATGGAAGTATTCCACCTGAACTTGGAAACCTCTCCAGAA-TCCAGTTT 1318
Query 1751 CTTGATCTTTCACAGAATTCGCTTTCAGGGCCAATCCCGTCTTCCCTCGGGAGTTTGAAT 1810
|||||||||||||||||||| |||||||| |||||||||||||||||| || |||| ||
Sbjct 1319 CTTGATCTTTCACAGAATTCACTTTCAGGTTCAATCCCGTCTTCCCTCGAGAATTTGCAT 1378
Query 1811 ACTCTAACGCATTTCAATGTCTCCTATAACAATCTCTCTGGTGTTATCCCTCCTGTTCCA 1870
| ||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 1379 GCACTAACACATTTCAATGTCTCCTACAACAATCTCTCCGGTATTATCCCTCCTGTTCCA 1438
Query 1871 ATGATACAAGCTTTTGGATCTTCTGCATTTTCGAACAACCCTTTCCTTTGCGGTGATCCT 1930
||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1439 GTGATACAAGCTTTCGGATCTTCTGCGTTTTCAAACAACCCTTTCCTTTGCGGTGATCCT 1498
Query 1931 CTTGTAACTCCCTGCAATTCACGTGGAGCTGCAGCAAAATCCAGAAATTCTGATGCTCTA 1990
|||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 1499 CTTGTAACTCCCTGCAATTCTCGTGGGGCTGCAGCAAAATCCAGAAATTCTAATGCTCTA 1558
Query 1991 AGCATTTCGGTTATCATCGTTATTATTGCGGCTGCTGTCATCCTCTTTGGTGTCTGCATT 2050
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1559 AGCATTTCGGTTATCATTGTTATTATTGCGGCTGCTATTATCCTCTTTGGTGTCTGTATA 1618
Query 2051 GTGCTTGCTTTGAACCTAAGAGCTCGTAAAAGGAGAAAAGATGAAGAAATACTTACAGTT 2110
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1619 GTGCTTGCTTTGAACCTAAGAGCTCGTAAAAGGAGAAAAGATGAGGAAATACTTACAGTG 1678
Query 2111 GAAACCACTCCACTGGCGTCTTCGATTGACTCTAGCGGTGTGATAATTGGAAAGCTTGTT 2170
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1679 GAAACCACTCCTCTGGCGTCTTCAATTGACTCTAGCGGTGTGATAATCGGAAAGCTTGTT 1738
Query 2171 CTTTTCAGCAAGAATTTGCCTTCAAAGTATGAAGATTGGGAGGCAGGTACAAAAGCTTTG 2230
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1739 CTTTTCAGCAAGAATTTGCCATCAAAATATGAAGATTGGGAGGCGGGTACAAAAGCTTTA 1798
Query 2231 CTCGACAAGGAAAATATAATCGGCATGGGATCGATTGGATCAGTCTATAGAGCATCTTTC 2290
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1799 CTCGACAAAGAAAATATAATTGGCATGGGGTCGATTGGATCAGTCTATAGAGCATCTTTC 1858
Query 2291 GAAGGAGGAGTTTCCATTGCAGTGAAGAAGCTTGAGACCTTAGGAAGAATCAGAAACCAA 2350
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1859 GAAGGAGGGGTTTCCATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGAATCAGAAACCAA 1918
Query 2351 GAAGAGTTTGAGCAAGAAATTGGACGGCTTGGAGGTTTGCAACATCCGAATCTGTCTTCT 2410
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GAAGAGTTTGAGCAAGAAATCGGACGGCTTGGAGGTTTGCAACATCCGAATCTGTCTTCT 1978
Query 2411 TTCCAAGGTTACTACTTTTCCTCAACAATGCAGTTGATTCTCTCTGAGTTTGTCCCTAAT 2470
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1979 TTCCAAGGTTACTACTTTTCCTCAACAATGCAGTTGATTTTCTCTGAATTTGTCCCTAAC 2038
Query 2471 GGTAGCCTCTACGATAATCTACACCTAAGAATTTTCCCGGGAACCAGCTCAAGCTATGGG 2530
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||
Sbjct 2039 GGTAGCCTCTACGATAATCTACACTTAAGAATTTACCCTGGAACCAGCTCAAGCCATGGG 2098
Query 2531 AATACTGATTTGAATTGGCACAGAAGATTTCAGATTGCTTTAGGAACTGCAAAAGCGCTC 2590
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2099 AATACCGATTTGAATTGGCACAGAAGATTTCAGATTGCTTTAGGAACCGCGAAAGCGCTC 2158
Query 2591 TCTTTCCTTCACAATGACTGTAAACCGGCGATTCTTCATCTCAATGTTAAGTCCACCAAC 2650
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2159 TCTTTCCTACACAATGACTGTAAACCGGCAATTCTTCATCTCAATGTTAAGTCCACCAAC 2218
Query 2651 ATTCTTCTAGACGAAAGGTACGAGGCAAAGCTATCGGATTATGGGTTAGAAAAGTTTCTT 2710
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2219 ATTCTTCTAGACGAAAGATATGAGGCAAAGCTATCGGATTATGGGTTAGAAAAGTTTCTT 2278
Query 2711 CCGGTTATGGACAGCTTTGGTTTGACTAAGAAGTTCCACAACGCGGTTGGGTACATTGCT 2770
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2279 CCGGTTATGGACAGCTTCGGTTTGACCAAGAAGTTCCACAACGCGGTTGGGTACATTGCT 2338
Query 2771 CCAGAGTTAGCTCAGCAGAGTTTGAGAGCGAGTGAGAAATGCGATGTGTATAGTTACGGT 2830
|||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 2339 CCAGAGCTAGCTCAGCAGAGTTTGAGAGTGAGTGAGAAATGCGACGTGTATAGTTATGGT 2398
Query 2831 GTGGTTCTTCTTGAGCTGGTTACAGGTAGAAAACCGGTGGAGTCTCCATCG-GAAAACCA 2889
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 2399 GTAGTTCTTCTTGAGCTGGTTACAGGTAGAAAACCGGTGGAGTCTCCATCGAGAAA-CCA 2457
Query 2890 AGTCTTGATCTTGAGAGACTATGTGAGGGATTTGTTGGAGACTGGTTCAGCTTCTGATTG 2949
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 2458 AGTCTTGATCTTGAGAGATTATGTGAGGGATTTGTTGGAAACTGGTTCGGCTTCTGATTG 2517
Query 2950 TTTTGACAGAAGGTTGAGAGAGTTTGAAGAGAATGAGCTGATTCAAGTCATGAAGTTAGG 3009
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2518 TTTTGACAGAAGGTTGAGAGAGTTTGAAGAGAACGAGCTGATTCAAGTCATGAAGTTAGG 2577
Query 3010 ACTCCTTTGTACGTCCGAGAATCCACTGAAGAGACCGAGCATGGCTGAGGTTGTGCAGGT 3069
||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2578 ACTCCTTTGTACGTCAGAGAATCCACTGAAGAGACCGAGTATGGCTGCGGTTGTGCAGGT 2637
Query 3070 TCTTGAATCAATCAGAAATGGATTTGGATCATGATGAAGCTTTTTCCCtttt 3121
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||
Sbjct 2638 TCTTGAATCAATTAGAAATGGATTTGGATCATGATAAAGCTTTTTCC-TTTT 2688
> Ahg475059 jgi|Araly1|475059|fgenesh2_kg.2__189__AT1G62950.1
Length=2792
Score = 2012 bits (1089), Expect = 0.0
Identities = 2145/2641 (81%), Gaps = 128/2641 (5%)
Strand=Plus/Plus
Query 530 GAACGAGACATTCTGCTTCAGTTCAAAGGCAGTATCAGTGACGATCCATACAACAGCTTG 589
|||||||| ||||| ||||| |||| || || |||| || ||||| |||||||| ||
Sbjct 88 GAACGAGAGATTCTACTTCAATTCAGAGACAACATCAACGATGATCCGTACAACAGTTTA 147
Query 590 GCTTCTTGGGTTTCCGATGGTGACCTCTGCAATAGCTTCAATGGAATCA-CTTGTAACCC 648
||||||||||| ||| ||||||| || || |||||||||||||| | | |||||||||
Sbjct 148 GCTTCTTGGGTCTCCAATGGTGATCTTTGTAATAGCTTCAATGGTGT-ATCTTGTAACCG 206
Query 649 ACAAGGTTTCGTGGACAAA-ATCGTTCTGTGGAACACAAGTCTCGCCGGAACCTTAGCTC 707
| |||| ||||| || ||| |||||||| |||||||||||||||||||||||| || | |
Sbjct 207 AGAAGGATTCGTCGA-AAAGATCGTTCTTTGGAACACAAGTCTCGCCGGAACCCTAACGC 265
Query 708 CGGGATTGTCAAATCTAAAGTT-TATT-CGAGTTCTGAACT-TGTTTGGCAACAGGTTTA 764
||| |||||| | | || || | || | ||| || ||| ||||||||||||| ||||
Sbjct 266 CGGCATTGTCTGGT-TTAACTTCT-TTAAGGGTTTTG-ACTCTGTTTGGCAACAGTTTTA 322
Query 765 CAGGTAATTTACCGTTGGATTACTTC-AAGTTGCAAACTTTGTGGACGATTAATGTTAGT 823
||||||| ||||||||||||||| || ||||| || ||||| |||| ||| |||||||||
Sbjct 323 CAGGTAAGTTACCGTTGGATTAC-TCAAAGTTACAGACTTTATGGAAGATCAATGTTAGT 381
Query 824 TCCAATGCGTTGTCTGGTCCGATTCCGGAGTTTATTAGTGAATTGTCTAGCTTAAGGTTT 883
|||||||| ||||||||| ||||||| || ||||| |||| ||| ||| |||||| ||
Sbjct 382 TCCAATGCATTGTCTGGTTCGATTCCTGAATTTATCGGTGATTTGCCTAATTTAAGG-TT 440
Query 884 C-TAGACTTGTCTAAAAATGGTTTCACCGGAGAGATTCCG-GTTTCTCTGTTTAAGTTCT 941
| | || ||||| |||||||||||| |||||||||||| | |||||||||||| ||||
Sbjct 441 CTTGGATTTGTCGAAAAATGGTTTCTTTGGAGAGATTCCGAG-TTCTCTGTTTAAATTCT 499
Query 942 G-TGACAAGACCAAATTTGTTTCACTGGCTCATAACAATATCTTTGGATCAATCCCTGCT 1000
| | ||||||||| ||||||||| || ||||||||||| ||| ||||| ||||| |
Sbjct 500 GCT-TCAAGACCAAGTTTGTTTCATTGTCTCATAACAATCTCTCAGGATCTATCCCGGAA 558
Query 1001 TCAATTGTAAACTGTAACAACCTCGTAGGATTTGATTTCTCTTACAATAATC-TGAAGGG 1059
||||| |||||||||||||| ||| | || || ||||||||||||||| | | | |
Sbjct 559 TCAATCGTAAACTGTAACAATCTCATCGGCTTCGATTTCTCTTACAAT-GGCAT-TACCG 616
Query 1060 AGTGTTGCCGCCTAGGATTTGTGATATTCCTGTGCTTGAATATATCTCAGTGAGAA-ACA 1118
|| ||| |||| | || || |||||||| || ||||| | | | || || |||| | |
Sbjct 617 -GT-TTGTTGCCTCGAATCTGCGATATTCCGGTTCTTGAGTTTGTATCCGTTAGAAGA-A 673
Query 1119 ATTTGTTGTCTGGTGATGTCTCTGAGGAGATACAGAAATGTC-AGAGGTTGATTCTTGTT 1177
|| |||||||||||||||| | |||||||||| ||| || | |||| |||| | |||
Sbjct 674 ATGTGTTGTCTGGTGATGTGTTTGAGGAGATATTGAAGTG-CAAGAGATTGAGCCATGTG 732
Query 1178 GATTTAGGAAGCAATTTGTTTC-ATGGATTAGCGCCTTTTGCGGTTCTTACG-TTCAAGA 1235
||| |||||||||| || |||| ||||| ||| | |||| | ||||||| | |||||||
Sbjct 733 GATATAGGAAGCAA-TTCTTTCGATGGAGTAGGGTCTTTCGAGGTTCTT-GGATTCAAGA 790
Query 1236 ACATAACTTATTTCAATGTCTCTTGG-AACCGATTTGGTGGTGAGATTGGAGAGATAGTT 1294
||||||||||||||||||| || ||| ||||| ||| || |||||||| ||||| |||
Sbjct 791 ACATAACTTATTTCAATGTGTC-TGGAAACCGGTTTACCGGGGAGATTGGTGAGATTGTT 849
Query 1295 GATTGCAGTGAAAGTTTGGAGTTTTTGGATGCTTCGTCGAATGAGTTAACCGGTAGGAT- 1353
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 850 GATTGTAGTGAAAGTTTGGAGTTTTTGGATGCTTCTTCGAATGAGTTAACGGGTA--ATG 907
Query 1354 T-CCTA-CTGGTGTTATGGGTTGCAAAAGTCTCAAGCTTTTGGATTTGGAGTCTAACAAG 1411
| |||| | ||| | | || ||||||||||| ||||||||||| |||| || || |||
Sbjct 908 TACCTAGC-GGTATAACCGGATGCAAAAGTCTTAAGCTTTTGGACCTGGAATCGAATAAG 966
Query 1412 CTGAATGGAAGTATCCCGGGAAGTATTG-GGAAGATGGAGA-GCCTCTCAGTGATCAGAT 1469
|| ||||| ||| | || | | |||| | |||||||||||| || |||| ||||||||||
Sbjct 967 CTCAATGGGAGTGTACCTGCAGGTAT-GAGGAAGATGGAGAAGC-TCTCTGTGATCAGAT 1024
Query 1470 TAGG-GAATAA-TTCTATAGATGGGGTGATACCAAGAGATATTGGAAGT-TTGGAGTTTC 1526
|||| || ||| || |||||||||| |||||| || | |||| | ||| ||| ||
Sbjct 1025 TAGGCGA-TAACTT-TATAGATGGGAAGATACCGCTCGAGCTCGGAAATCTTG-AGTATC 1081
Query 1527 TACAGGTTTTGAATCTGCATAATCTCAATCTCATTGGTGAAGTTCCAGAGGATATATCCA 1586
|||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||| |
Sbjct 1082 TACAGGTTTTGAATTTGCATAATCTCAATCTCATTGGTGAAATACCAGAGGATTTATCAA 1141
Query 1587 ATTGCAGAGTACTTCTTGAACTAGATGTTTCAGGGAATGATTTAGAAGGAAAGATCTCTA 1646
|||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||| |||
Sbjct 1142 ATTGCAGACTACTTCTTGAACTAGATGTTTCTGGGAATGCTTTAGAAGGAGAGATCCCTA 1201
Query 1647 AGAAGCTATTAAACTTAACAAACATAAAGATTCTTGATCTGCATCGAAACCGTCTGAACG 1706
|||| ||||| |||||||||||| || |||| |||||||||||||| ||||| | | |
Sbjct 1202 AGAATCTATTGAACTTAACAAACTTAGAGATCCTTGATCTGCATCGGAACCGAATCAGTG 1261
Query 1707 GAAGTATCCCACCTGAA-CTTGGAAACCTCTCCA-AAGTCCAGTTTCTTGATCTTTCACA 1764
|||| || || ||| || ||||| |||||||| | || ||||||| || ||||||||| |
Sbjct 1262 GAAGCATTCCGCCT-AATCTTGGGAACCTCTCGAGAA-TCCAGTTCCTCGATCTTTCAGA 1319
Query 1765 GAATTCGCTTTCAGGGCCAATCCCGTCTTCCCTCGGGAGTTTGAATACTCTAACGCATTT 1824
||||| |||||| || || ||||||||||| ||| ||| |||||||| || || |||||
Sbjct 1320 GAATTTGCTTTCTGGTCCTATCCCGTCTTCTCTCAGGAATTTGAATAGACTGACACATTT 1379
Query 1825 CAATGTCTCCTATAACAATCTCTCTGGTGTTATCCCTCCTGTTCCAATGATACAAGCTTT 1884
|||||| || || ||||| ||||| || |||| ||| || ||| |||||||
Sbjct 1380 CAATGTTTCTTACAACAACCTCTCCGGCATTAT---TCCA-----AA-GATTCAAGCTTC 1430
Query 1885 TGGATCTTCTGCATTTTCGAACAACCCTTTCCTTTGCGGTGATCCTCTTGTAACTCCCTG 1944
||| ||||| | ||||| |||||||||||||| |||||||||||||||| ||| || ||
Sbjct 1431 GGGAGCTTCTTCGTTTTCCAACAACCCTTTCCTCTGCGGTGATCCTCTTGAAACACCGTG 1490
Query 1945 CAATTCACGTG-GAGCTGCAGCAAAATCCAGAAATTCTGATGCTCTAAGCATTTCGGTTA 2003
|||| | | | || ||| | ||| ||| ||||| | | |||||||||| || ||||
Sbjct 1491 CAATGCTC-TCAGAACTGGATCAAGATCAAGAAAAACCAAAGCTCTAAGCACCTCTGTTA 1549
Query 2004 TCATCGTTATTATTGCGGCTGCTGTC-ATCCTCTTTGGTGTCTG-CATTGTGCTTGCTTT 2061
|||| ||||| || || ||||||| | ||| | |||| |||| | | ||||||| |||
Sbjct 1550 TCATTGTTATCATCGCTGCTGCTG-CGATCTTGGCTGGTATCTGTC-TAGTGCTTGTTTT 1607
Query 2062 GAACCTAAGAGCTCGTAAAAGGA-G-AAAA-GA-TGAAGAA-A--TACTTACAGTTGA-A 2113
|||||| || ||||||||||| | | |||| | ||||||| | || | || |||| |
Sbjct 1608 GAACCTTAGGGCTCGTAAAAG-ACGGAAAAAGCCTGAAGAAGAAATAGTCACTTTTGATA 1666
Query 2114 AC-CA-CTCC-ACT--GGCGTCTTCG-A-T-TGACTC-TAGCGGTGTGATAATT-GG-AA 2162
|| || | || || |||||| || | | || | | | ||||| | | || || ||
Sbjct 1667 ACACAACACCCACACAGGCGTCAACGGAATCTGG-TAATGGTGGTGTAACA-TTCGGGAA 1724
Query 2163 AGCTTGTTCTTTTCAGCAAGAATTTGCCTTCAAAGTATGAAGATTGGGAGGCAGGTACAA 2222
| |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1725 A-CTTGTTCTATTCAGCAAGAGTTTGCCTTCAAAGTATGAAGATTGGGAGGCGGGTACAA 1783
Query 2223 AAGCTTTGCTCGACAAGGAAAATATAATCGGCATGGGATC-GATTGGA-TCAGTCTATAG 2280
|||| || ||||||||||| || || ||||| || ||||| | ||||| | || |||||
Sbjct 1784 AAGCATTACTCGACAAGGATAACATTATCGGTATTGGATCAG-TTGGAGTG-GTTTATAG 1841
Query 2281 AGCATCTTTCGAAGGAGGAGTTTCCATTGCAGTGAAGAAGCTTGAGAC-CTTAGGAAGAA 2339
||||||||||||||| || ||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 1842 AGCATCTTTCGAAGGCGGGGTTTCCATTGCAGTGAAAAAGCTCGAGACTCT-AGGAAGAA 1900
Query 2340 TCAGAAACCAAGAAGAGTTTGAGCAAGAAATTGGACGGCTTGGAGGTTTGCAA--CATCC 2397
|||||| |||||||||||||||||||||||| ||| |||||||| |||| || || ||
Sbjct 1901 TCAGAAGCCAAGAAGAGTTTGAGCAAGAAATCGGAAGGCTTGGAAGTTT--AAGTCACCC 1958
Query 2398 GAATCT-GTCTTCTTTCCAAGGTTACTACTTTTCCTCAACAATGCAGTTGATTCTCTCTG 2456
|||||| | ||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1959 GAATCTTG-CTTCTTTTCAAGGTTACTACTTTTCCTCGACAATGCAGTTAATTCTTTCTG 2017
Query 2457 AGTTTGTCCCTAATGGTAGCCTCTACGATAATCTACACCTAAGAATTT-TCCCGGGAACC 2515
| |||||| | || || ||||| || ||||||||||||| ||||| | || | ||||
Sbjct 2018 AATTTGTCACAAACGGAAGCCTTTATGATAATCTACACCCGAGAATCTCTCATAG-AACC 2076
Query 2516 AGC--T--CA--AGCT---ATGGGAATACTGATTT-GAATTGGCACAGAAGATTTCAGAT 2565
||| | || ||| |||| || || || || || |||||| |||||||| || ||
Sbjct 2077 AGCAGTAGCAGCAGCAGCCATGGAAACACCGAGTTAGA-TTGGCATAGAAGATTCCAAAT 2135
Query 2566 TGCTTTAGGAACTGCAAAAGCGCTCTCTTTCCTTCACAATGACTGTAAACCGGCGATTCT 2625
|| ||||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 2136 AGCAGTAGGAACTGCAAAGGCGCTTTCTTTTCTTCACAACGATTGTAAACCCGCGATTCT 2195
Query 2626 TCATCTCAATGTTAAGTCCACCAACATTCTTCTAGACGAAAGG-TACGAGGCAAAGCTAT 2684
|||||||||| | ||||| ||||||||||| || || ||| || ||||||||||||||||
Sbjct 2196 TCATCTCAATATAAAGTCTACCAACATTCTCCTTGATGAA-GGATACGAGGCAAAGCTAT 2254
Query 2685 CGGATTATGGGTTAGAAAAGTTTCTTCCGGTTATGGACAGCTTTGGTTTGACTAAGAAGT 2744
| ||||| || || |||||||||||||||||| || ||||||| ||||| | |||||
Sbjct 2255 CAGATTACGGTTTGGAAAAGTTTCTTCCGGTTTTGAACAGCTTCAATTTGA--A-GAAGT 2311
Query 2745 TCCACAACGCGGTTGGGTACATTGCTCCAGAGTTAGCTCAGCAGAGTTTGAGAGCGAGTG 2804
||||||| |||||||| ||||| ||||||||| |||||||| || |||||||| |||||
Sbjct 2312 TCCACAATGCGGTTGGATACATAGCTCCAGAGCTAGCTCAG-AG--TTTGAGAGTGAGTG 2368
Query 2805 AGAAATGCGATGTGTATAGTTACGGTGTGGTTCTTCTTGAGCTGGTTACAGGTAGAAAAC 2864
| ||||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 2369 ATAAATGTGATGTTTATAGCTACGGTGTAGTTCTTCTTGAGCTTGTTACAGGTAGAAAAC 2428
Query 2865 CGGTGGAGTCTCCATCGGAAAACCAAGTCTTGATCTTGAGAGA-CTATGTGAGGGATTTG 2923
|||||||||| ||||| |||||| | || |||||||| || || | ||||||||||||||
Sbjct 2429 CGGTGGAGTCGCCATCCGAAAACGAGGTTTTGATCTTAAGGGATC-ATGTGAGGGATTTG 2487
Query 2924 TTGGAGACTGGTTCAGCTTCTGATTGTTTTGACAGAAGGTTGAGAGAGTTTGAAGAGAAT 2983
|||||||| || || |||||||||||||||||||| || |||| | |||||||||||||
Sbjct 2488 TTGGAGACAGGGTCGGCTTCTGATTGTTTTGACAGTAGATTGATTGGGTTTGAAGAGAAT 2547
Query 2984 GAGCTGATTCAAGTCATGAAGTTAGGACTCCTTTGTACGTCCGAGAATCCACTGAAGAGA 3043
|||||||||||||| ||||| ||||| || ||||| ||| | ||||||||| ||||||||
Sbjct 2548 GAGCTGATTCAAGTGATGAAATTAGGTCTGCTTTGCACGACAGAGAATCCATTGAAGAGA 2607
Query 3044 CCGAGCATGGCTGAGGTTGTGCAGGTTCTTGAATCAATCAGAAATGGATTTGGA-TCATG 3102
||||||||||| |||||||||||||||||||||| |||||||||||| | ||| |||||
Sbjct 2608 CCGAGCATGGCAGAGGTTGTGCAGGTTCTTGAATTGATCAGAAATGGAAT-GGAATCATG 2666
Query 3103 A 3103
|
Sbjct 2667 A 2667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124143803126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5