BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12480.1
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471398 jgi|Araly1|471398|fgenesh2_kg.1__1352__AT1G12480.1 2977 0.0
> Ahg471398 jgi|Araly1|471398|fgenesh2_kg.1__1352__AT1G12480.1
Length=1835
Score = 2977 bits (1612), Expect = 0.0
Identities = 1787/1866 (96%), Gaps = 33/1866 (2%)
Strand=Plus/Plus
Query 6 AAAAATATCTTCTCTTGTGTTTCAAATTATCAAATTGCTCTGATCAATGGAGAGGAAACA 65
||| |||||||||| |||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1 AAATATATCTTCTCGTGTGTTTC-AAGTATCATATTGCTCTGATCAATGGAGAGGAAACA 59
Query 66 GTCAAATGCTCATTCCACTTTCGCCGACATCAATGAAGTTGAAGATGAAGCAGAGCAAGA 125
||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 60 ATCAAATGGTCATTCCACTTTCGCCGACATCAATGAAGTTGAAGAAGAAGCAGATCAAGA 119
Query 126 A-CTGCAACAGCAAGAGAACAACAACAACAAGAGATTCTCTGGAAACAGAGGACCAAACC 184
| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCT-CAACAGCAAGAG---AACAACAACAAGAGATTCTCTGGAAACAGAGGACCAAACC 175
Query 185 GAGGGAAACAAAGACCATTCAGAGGTTTTAGCAGACAGGTTTCGCTAGAGACAGGTTTCT 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 GAGGGAAACAAAGACCATTCAGAGGTTTCAGCAGACAGGTTTCGCTAGAGACAGGTTTCT 235
Query 245 CAGTGCTCAACAGAGAATCTAGAGAAAGAGATGACAAAAAGAGTTTACCGAGGAGTGGTC 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CAGTGCTTAACAGAGAATCTAGAGAAAGAGATGACAAAAAGAGTTTACCGAGGAGTGGTC 295
Query 305 GTAGCTTTGGCGGGTTTGAATCAGGTGGAATCATCAACGGTGGAGATGGTCGGAAAACAG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GTAGCTTTGGCGGGTTTGAATCAGGTGGAATCATCAACGGTGGAGATGGTCGGAAAACAG 355
Query 365 ATTTTAGTATGTTTAGGACTAAATCAACGCTCAGCAAACAAAAGTCTTTATTGCCTTCTA 424
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 ATTTCAGTATGTTTAGGACTAAATCAACGCTCAGCAAACAAAAGTCTCTATTGCCTTCTA 415
Query 425 TAATAAGGGAGAGAGACATTGAGAATTCTTTAAGAACTGAAGATGGTGAGACCAAAGATG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TAATAAGGGAGAGAGACATTGAGAATTCTTTAAGAACTGAAGATGGTGAGACCAAAGATG 475
Query 485 ATTCTATAAATGAAAATGTTTCTGCAGGAAGATACTTTGCTGCTCTTAGAGGACCTGAAT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATTCTATAAATGAAAATGTTTCTGCAGGAAGATACTTTGCTGCTCTTAGAGGACCTGAAT 535
Query 545 TGGATGAAGTCAAGGACAATGAAGATATTCTGCTTCCAAAAGAGGAGCAATGGCCGTTTC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGGATGAAGTCAAGGACAATGAAGATATTCTGCTTCCAAAAGAGGAGCAATGGCCGTTTC 595
Query 605 TCCTAAGGTTCCCAATTGGATGCTTCGGTATCTGTTTGGGACTTAGCAGTCAAGCTGTCT 664
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCTAAGGTTCCCGATTGGATGCTTCGGTATCTGTTTGGGACTTAGCAGTCAAGCTGTCT 655
Query 665 TGTGGCTTGCCCTAGCGAAAAGTCCTGCAACAAACTTTTTACACATCACACCATTGATTA 724
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 656 TGTGGCTTGCCCTAGCGAAAAGTCCTTCTACAAACTTTTTACACATCACACCATTGATTA 715
Query 725 ACTTAGTTGTATGGCTATTTTCACTGGTAGTTTTAGTCTCTGTGTCCTTCACTTACATAC 784
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 ACTTAGTTGTATGGCTATTTTCACTGGTAGTTTTAGTCTCTGTCTCCTTCACTTACATAC 775
Query 785 TCAAATGCATCTTCTACTTTGAAGCTGTCAAAAGAGAGTATTTTCATCCTGTTCGAGTCA 844
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCAAATGTATCTTCTACTTTGAAGCTGTCAAAAGAGAGTATTTTCATCCTGTTCGAGTCA 835
Query 845 ACTTCTTCTTCGCTCCTTGGGTGGTTTGCATGTTCCTAGCCATTAGCGTACCTCCCATGT 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 836 ACTTCTTCTTCGCTCCTTGGGTGGTTTGCATGTTCCTAGCCATTAGCGTACCTCCCGTGT 895
Query 905 TCTCACCAAACCGAAAATACCTCCATCCCGCCATTTGGTGTGTTTTCATGGGTCCTTATT 964
||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCT---C--ACC-AAAATACCTCCATCCCGCCATTTGGTGTGTTTTCATGGGTCCTTATT 949
Query 965 TCTTCCTCGAGCTAAAGATCTACGGGCAATGGCTTTCGGGAGGGAAGAGGCGACTATGCA 1024
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TCCTCCTCGAGCTAAAGATCTACGGGCAATGGCTTTCGGGAGGGAAGAGGCGACTATGCA 1009
Query 1025 AAGTCGCAAACCCATCTTCTCATCTTTCTGTTGTAGGGAATTTCGTCGGGGCCATCTTAG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AAGTCGCAAACCCATCTTCTCATCTTTCTGTTGTAGGGAATTTCGTCGGGGCCATCTTAG 1069
Query 1085 CTTCAAAAGTTGGATGGGATGAAGTAGCTAAGTTTCTATGGGCAGTAGGTTTTGCACATT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CTTCAAAAGTTGGATGGGATGAAGTAGCTAAGTTTCTATGGGCAGTAGGTTTTGCACATT 1129
Query 1145 ACTTGGTTGTGTTTGTAACACTTTATCAGAGACTTCCCACCAGTGAAGCTCTTCCTAAAG 1204
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1130 ACTTGGTTGTGTTTGTAACACTTTATCAGAGACTTCCCACCAGTGAAGCTCTGCCTAAAG 1189
Query 1205 AGCTTCATCCTGTTTACTCTATGTTCATTGCTGCCCCATCAGCAGCAAGTATTGCTTGGA 1264
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1190 AGCTTCATCCTGTTTACTCTATGTTCATAGCTGCCCCATCAGCAGCAAGTATTGCTTGGA 1249
Query 1265 ACACGATATATGGCCAATTCGACGGATGTTCAAGAACTTGCTTCTTCATTGCACTCTTCC 1324
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1250 ACACAATATATGGCCAATTCGACGGATGTTCAAGAACTTGCTTCTTTATTGCACTCTTCC 1309
Query 1325 TATACATATCCCTAGTTGCTCGGATCAATTTCTTCACTGGATTTAAGTTCTCAGTGGCGT 1384
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TATACATTTCCCTAGTTGCGCGGATCAATTTCTTCACTGGATTTAAGTTCTCAGTGGCGT 1369
Query 1385 GGTGGTCATATACTTTTCCTATGACAACAGCATCCGTAGCAACAATAAAGTATGCAGAGG 1444
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1370 GGTGGTCATATACTTTTCCTATGACAACAGCATCAGTAGCAACAATAAAGTATGCAGAGG 1429
Query 1445 CAGTACCTGGTTACCCGAGCCGGGCTCTAGCACTCACTCTTTCCTTCATTTCCACAGCGA 1504
||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||| ||
Sbjct 1430 CAGTACCCGGTTACCCGAGCCGAGCTCTAGCCCTCACTCTTTCCTTCATTTCTACAGTGA 1489
Query 1505 TGGTCTGCGTTTTGTTTGTCTCCACGCTTCTCCACGCCTTTGTCTGGCAAACGTTGTTCC 1564
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1490 TGGTCTGCGTTTTGTTTGTCTCCACGCTTCTCCACGCCTTTGTCTGGCAAACTTTGTTCC 1549
Query 1565 CAAACGATCTTGCAATTGCCATTACAAAGAGGAAACTTACCAGGGAGAAGAAGCCTTTTA 1624
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1550 CAAACGATCTTGCAATTGCCATTACAAAGAAGAAACTTACCAGGGAGAAGAAACCTTTCA 1609
Query 1625 AAAGAGCTTATGACTTGAAGCGCTGGACCAAGCAGGCTCTGGCGAAGAAAATATCTGCAG 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AAAGAGCTTATGACTTGAAGCGCTGGACCAAGCAGGCTCTGGCGAAGAAAATATCTGCAG 1669
Query 1685 AAAAAGATTTTGAAGCAGAGGAAGAGTCGCATCACTGATGTAAAATCATGGAATACAGAA 1744
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1670 AAAAAGATTTTGAAGCCGAGGAAGAATCGCGTCACTGATGTAAAATCATGGAATACAGAA 1729
Query 1745 GTATCTTTTAGATCGAAATAATAGTTCA-GAAAAACACTTAGATATAGAGACAAAAGTAG 1803
|||||||| |||| ||||||||||| || ||||| || || | |||| ||
Sbjct 1730 GTATCTTTGAGATGGAAATAATAGT-CAAGAAAA-CA-TT---T-TAGA--------TA- 1773
Query 1804 GTGAGATAGCATATTGTATGTATCTCCAGAAGCATGTTTAATAGTAATACTACATCAATA 1863
| ||| | || ||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 1774 -T-AGACA-CA-ATTGTATGTATCTCCGGAAGCATGTTTAATAATAATATTACATCAATA 1829
Query 1864 ATACAG 1869
|||||
Sbjct 1830 CTACAG 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70657404475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5