BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12500.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471399 jgi|Araly1|471399|fgenesh2_kg.1__1353__AT1G12500.1 2272 0.0
Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1 76.8 4e-13
> Ahg471399 jgi|Araly1|471399|fgenesh2_kg.1__1353__AT1G12500.1
Length=1534
Score = 2272 bits (1230), Expect = 0.0
Identities = 1454/1555 (94%), Gaps = 43/1555 (3%)
Strand=Plus/Plus
Query 14 tctctctctctctctagaaaaagaaagaaagaagaaaaaCTTATTGTTATTCCCATTTCG 73
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTAGAAAAAGAAAGAGTGAAGAAAAACTTATTATTATTCCCATTTTA 60
Query 74 CCCCTATCC-GAAAAATGGTTGAAGCTCAATCATGGACAACGCGGCGGATGAGCAATCCT 132
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCCCTA-CCTGAAAAATGGTTGAAGCTCAATCATGGACAACACGGCGGATGAGCAATCCT 119
Query 133 AGATTCGACGCCGCCGCAACCGCCGCACCAACCATCGTAGACATCCCCGGAACACCACCA 192
|||||||| ||| | |||||||||||||| |||||||||||||||||||| |||
Sbjct 120 AGATTCGA------CGC-A--GCCGCACCAACCATTGTAGACATCCCCGGAACACCTCCA 170
Query 193 CACTCCTCCGCTTCTTCACCACTCAAACCCTTCTTCCTCTCTTCCCCCACCGTATCACCA 252
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||
Sbjct 171 CACTCCTCCGCTTCTTCACCCCTCAAACCCTTCTTCCTCTCTTTCCCTACCGTATCTCCA 230
Query 253 ACAATCCTCACGGCGGCTATAATCGCCGCCTGGTTTGGCTCAAATATAGGAGTCCTCCTC 312
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 231 ACAATCCTCACGGCGGCGATAATCGCCGCCTGGTTTGGCTCAAACATAGGAGTCCTCCTC 290
Query 313 TTAAACAAATACCTTCTCTTCTACTACGGTTTCCGTTACCCAATCTTCCTCACCATGACA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTAAACAAATACCTTCTCTTCTACTACGGTTTCCGTTACCCAATCTTCCTCACCATGACA 350
Query 373 CACATGTTATCATGCGCCGCCTATAGCTCCGCCGTAATCAATATCGCCGGAATCGTGCCA 432
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 351 CACATGTTATCCTGCGCCGCTTATAGCTCCGCCGTAATCAACGTCGCCGGAATCGTGCCA 410
Query 433 CGTCAGCACATCTTATCTCGCCGTCAGTTTCTAAAGATCCTCTCTTTGTCAGCGATCTTT 492
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 CGTCAGCACATCTTATCTCGCCGTCAGTTTCTAAAGATCCTCTCTTTATCAGCGATCTTT 470
Query 493 TGTCTCTCCGTCGTCTGTGGCAACACTTCGCTACGTTATATCCCTGTTTCTTTTAATCAA 552
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGTCTCTCCGTCGTCTGCGGCAACACTTCGCTACGTTATATCCCTGTTTCTTTTAATCAA 530
Query 553 GCTATTGGAGCTACGACGCCGTTTTTCACCGCCGTGTTCTCTTTTCTCATTACTTGTAAA 612
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 531 GCTATTGGAGCCACCACGCCGTTCTTCACCGCCGTGTTCTCTTTTCTCATTACTTGTAAA 590
Query 613 ACAGAGTCCACTGAAGTTTATTTAGCTCTTCTTCCGGTTGTCTCCGGCATCGTTCTTGCT 672
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACAGAGTCCACTGAAGTTTACTTAGCTCTTCTTCCGGTTGTCTCCGGCATCGTTCTTGCT 650
Query 673 TCTAACTCTGAACCTTCTTTTCATCTTTTTGGTTTCCTTATCTGTGTTGCTTCCACCGCC 732
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 651 TCTAACTCTGAACCTTCTTTTCATCTTTTTGGTTTCCTCATCTGTGTTGCTTCCACCGCC 710
Query 733 GGTAGAGCTCTCAAATCCGTCGTCCAGGGGATTATTCTGACGTCGGAATCGGAGAAGCTA 792
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 711 GGTAGAGCTCTCAAATCCGTCGTCCAGGGGATAATTTTGACGTCGGAATCGGAGAAGCTA 770
Query 793 CATTCTATGAATCTTTTGCTATACATGGCTCCAATGGCGGCTTGTATCTTACTACCATTT 852
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 771 CATTCTATGAATCTTTTGCTATACATGGCTCCAATGGCGGCTTGTATCTTATTACCATTT 830
Query 853 ACGCTATACATTGAAGGAAACGTTTTAAGAGTTCTAATCGAGAAA-GCGAGGACGGATCC 911
||| ||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||
Sbjct 831 ACGTTATACATTGAAGGAAACGTATTAAGAGTTTTAATAGA-AAAGGCGAGGACGGATCC 889
Query 912 ATTGATCATCTTCTTGTTAGCCGGGAATGCGACAGTGGCATATTTAGTGAATTTGACGAA 971
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATTGATCATCTTCTTGCTGGCCGGGAATGCGACAGTGGCATATTTAGTGAATTTGACGAA 949
Query 972 TTTCTTGGTGACAAAGCATACAAGTGCTCTCACATTGCAGGTTTTGGGGAACGGAAAAGC 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 950 TTTCTTGGTGACAAAGCATACAAGTGCTCTCACATTGCAGGTTTTGGGGAACGGTAAAGC 1009
Query 1032 TGCGGTGGCTGCCGGAGTCTCGGTT-TTGATATTTAGGAATCCGGTGACGGTGATGGGAA 1090
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1010 TGCGGTGGCTGCCGGAGTTTCGGTTCTT-ATATTTAGGAATCCGGTGACGGTGATGGGAA 1068
Query 1091 TAGCCGGATTTGGTGTGACGATTATGGGTGTGGTTCTCTATAGCGAAGCTAGGAAGAGAT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAGCCGGATTTGGTGTGACGATTATGGGTGTGGTTCTCTATAGCGAAGCTAGGAAGAGAT 1128
Query 1151 CCAAATTGCTAAACCAGAAGTGAAAAGTGTGA-AGAGAAAGATTATTGGATTTAAACCGG 1209
|||||||||| |||||||||||| ||||| || | |||||||||||||||||||||||||
Sbjct 1129 CCAAATTGCTTAACCAGAAGTGATAAGTGAGAGAAAGAAAGATTATTGGATTTAAACCGG 1188
Query 1210 TGAAGTAAtttttactttttaatttttacttcttttttttCGGTTTAGTTTCTTGATTCT 1269
|||||||||||| | |||||| |||||| || |||| |||||||||||||| |||||
Sbjct 1189 TGAAGTAATTTTAAATTTTTACTTTTTA-TT-TTTT----CGGTTTAGTTTCTTTATTCT 1242
Query 1270 TTGGAATTCTGCTATTGTTTGGAACCGGTTTGGTTCGTTTTGAGAGGGGGAAAATCAATT 1329
||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1243 TTGAAACTCTGCTATTGTTTTGAACCGGTTTGGTTCGTTT-GAGAGGGGGAAAATCAATT 1301
Query 1330 TAATTGTAAATGGTTGAGATTGGGGAAAAACTATGAAAAGAAAA-------GTGG-AG-A 1380
|||||||||||||||||| ||||||||||||||||||| ||||| |||| | |
Sbjct 1302 TAATTGTAAATGGTTGAGTTTGGGGAAAAACTATGAAATGAAAAAAAAAAAGTGGGAATA 1361
Query 1381 TATATTTATGTAACAAAAGTGAAAAAGTAGGGAGCATAATTAAAGGAAATAAGATTGTAT 1440
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1362 TATATTTATGTAACAAAAGTGAAAAAGTAGGGAGCATA-TTAAAGGAAATAAGATTGTAT 1420
Query 1441 ctttattttattttactttcttttagtt-tttt--ctttt-ctt----gtactattatgt 1492
|||||||||||||| |||||| ||| || |||| ||||| ||| ||||| |||| |
Sbjct 1421 CTTTATTTTATTTTCCTTTCTCTTAATTATTTTTTCTTTTTCTTTCTTGTACTGTTATCT 1480
Query 1493 tttatagtttgtcttaCCAAAATTATCGAAACATAGTGAGG-AAAATAGTCAAAA 1546
||||||||||||||||||||| |||||||||||||||| || |||| ||| ||||
Sbjct 1481 TTTATAGTTTGTCTTACCAAATTTATCGAAACATAGTGTGGGAAAA-AGTTAAAA 1534
> Ahg478471 jgi|Araly1|478471|fgenesh2_kg.3__1172__AT3G11320.1
Length=1594
Score = 76.8 bits (41), Expect = 4e-13
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 535 CCTGTTTCTTTTAATCAAGCTATTGGAGCTACGACGCCGTTTTTCACCGCCGTGTT 590
||||| || ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 604 CCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCCGTTTTTCACCGCCGTGTT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5