BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12530.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911017 jgi|Araly1|911017|Al_scaffold_0001_1271 726 0.0
> Ahg911017 jgi|Araly1|911017|Al_scaffold_0001_1271
Length=546
Score = 726 bits (393), Expect = 0.0
Identities = 471/509 (93%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 20 ATGGGTATGGCGAGGAAGATAAGCAAAGAGGAAGTTGTAGAGAAGCTTAAGGACGACGGA 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTATGGCGAGGAAGATAAGCAAAGAGGAAGTTGTAGAGAAGCTTAAGGACGACGGA 60
Query 80 GATTTTGATCGTCTCCGTCTCAAAATCATTCGCCGCCTCAAAGAAAACGAGGATTTACGG 139
||||||||||| || ||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 61 GATTTTGATCGCCTTCGTCTTAAAATCATACGCCGCCTCAAAGATAACGAGGAATTACGG 120
Query 140 AATAATATGATATCAGTTGTCAAGGAGTCAACATCTTTGAAACGACATGGTGCTCAAAAT 199
|| || |||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 121 AACAACATGATAGCAATTGTCAAGGAGTCAACAGCTTTGAAACGACAGGGTGCTCAAAAT 180
Query 200 ATGAAAACCAGGCAACTCTCTGATGCGATATTCGAAGAAGTCGGGAGCAAGATGCTAAGC 259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGAAAACCAGGCAACTTTCTGATGCGATATTCGAAGAAGTCGGGAGCAAGATGCTAAGC 240
Query 260 CAGCTCTCAGATGGTTTATGGGGGATAATAAGATCAGAAGACGGGATGAAGAATGAAATC 319
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 CAGCTCTCAGATGGGTTATGGGGGATAATAAGATCAGAGGACGGGATGAAGAAAGAAATC 300
Query 320 AGAGAAACCGTTCAATCCGTCTACGCCACATTATCTAACCCGAGAGGCGAGAAACGCGGA 379
||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 301 AGAGAAACCGTGCAATCCGTCTACGCCACATTATCTAACCCGGGAGGCGAGAAATGTGGA 360
Query 380 ACATCCGCTAGAGAAA-TGGAACATAAGATTCCAACACCaaaaaaaGAAGCAAGAACTGA 438
||||| |||||| ||| ||||||||||||||||||||||| |||| ||||| ||||
Sbjct 361 ACATCAGCTAGA-AAAGTGGAACATAAGATTCCAACACCATTCCCAGAAACAAGAGCTGA 419
Query 439 TTTCAACACCAGTCCAGCGAGTAAACAGAAGCAAGAGCTGATT-AAAGGAGCTGTAGAAG 497
|| |||||| ||||||||||||||||||||||||||| || || |||| || ||||||||
Sbjct 420 TTCCAACACTAGTCCAGCGAGTAAACAGAAGCAAGAGGTGGTTCAAAG-AGTTGTAGAAG 478
Query 498 ATAACAAAGGAGAGGCATGTAGTGATGAT 526
||||||||||||| |||||||||||||||
Sbjct 479 ATAACAAAGGAGAAGCATGTAGTGATGAT 507
Score = 99.0 bits (53), Expect = 4e-20
Identities = 69/76 (91%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 526 TGTACAAGATAACAAAGGAGAAGCATATAATGATGAT---GAAGAAGATCCTGAACTCCC 582
|||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct 471 TGTAGAAGATAACAAAGGAGAAGCATGTAGTGATGATAATGAAGAAGATCCTGAACTCCC 530
Query 583 TCCTGGCTTTGGCTAA 598
|||||| |||||||||
Sbjct 531 TCCTGGTTTTGGCTAA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5