BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12540.1

Length=1000
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471403 jgi|Araly1|471403|fgenesh2_kg.1__1357__AT1G12540.1         494    6e-139


> Ahg471403 jgi|Araly1|471403|fgenesh2_kg.1__1357__AT1G12540.1
Length=682

 Score =  494 bits (267),  Expect = 6e-139
 Identities = 318/341 (93%), Gaps = 10/341 (3%)
 Strand=Plus/Plus

Query  186  AAGCGAAATCATGAAAGGAGACGATGAGCCGAAGAACAAGAGAGCTAAACATAAAGAGCT  245
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  9    AAGCGAAATCAGGGAAGGAGACGATGAGCCGAAGAACAAGAGAGCTAAACATAAAGAGCT  68

Query  246  TGAGAGACAAAGAAGGCAAGAAAACACATCTCTATTCAAGA-TTCTAAGATATTTATTGC  304
            ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct  69   TGAGAGACAAAGAAGGCAAGAAATCACGTCTCTATTCAAGAATT-TAAGATATTTATTGC  127

Query  305  CATCTCAATACA-TAAAGGGTAAACGTTCCTCGGCAGATCACGTTCTAGAAGCAGTGAAT  363
            |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct  128  CATCTCAATACACTAA-GGGTAAACGTTCTTCGGCAGATCACGTTCTAGAAGCTGTGAAC  186

Query  364  TACATCAAAGACTTACAGAAGAAGATCAAAGAGGTCAGCGAAAAAAGAGATAGAATCAAG  423
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  187  TACATCAAAGACTTACAGAAGAAGATCAAAGAGGTCAGCAAAAAAAGAGATAGAATCAAG  246

Query  424  AGATCTATTACTCATCCATCATCAAGAGGAGAATTTTCAATAAGATCATTAGCATCATCA  483
            |||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||||||
Sbjct  247  AGATCTATTACTCATCCATCTTCAACAGGAGAATGTTCAATAATATCATTAACATCATCA  306

Query  484  ACTTGTTCTTGT----GTTGGAGACACGA-ACATTGCTGTT  519
            ||||||||||||    ||||||||||| | |||||||||||
Sbjct  307  ACTTGTTCTTGTACATGTTGGAGACAC-ACACATTGCTGTT  346


 Score =  132 bits (71),  Expect = 6e-30
 Identities = 79/83 (95%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  671  TACACACCATTGCTTCTGAGGTCGAGGAGGGAATAGAGGTTTATTTCTCAGAGCTTCAAG  730
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  440  TACACACCATTGTTTCTGAGGTCGAGGAGGGAATAGAGGTTTATTACTCAGAGCTTCAAG  499

Query  731  AAAAGATAATCAAAATTGGAACC  753
            |||| ||||||||||| ||||||
Sbjct  500  AAAACATAATCAAAATGGGAACC  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37169844075


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5