BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12550.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471404 jgi|Araly1|471404|fgenesh2_kg.1__1358__AT1G12550.1 1345 0.0
> Ahg471404 jgi|Araly1|471404|fgenesh2_kg.1__1358__AT1G12550.1
Length=1036
Score = 1345 bits (728), Expect = 0.0
Identities = 914/1002 (91%), Gaps = 19/1002 (2%)
Strand=Plus/Plus
Query 54 CAATGGCGGAATCTTCAGAGCCTCCGGTTGTTCTCCTTCACCGACCACCGTCTCTAACTT 113
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CAATGACGGAATCTTCAGATCCTCCGCTTGTTCTCCTTCACCGACCACCGTCTCTAACTT 60
Query 114 TCATGGACGAGATTCTGACTCGTGAATTCCGTACTCTCATCACCGACACTTCCTCATCGG 173
|||||||||||| | | | |||||||||||| ||||||||||||||||| | |||||||
Sbjct 61 TCATGGACGAGACTATAAGTCGTGAATTCCGGACTCTCATCACCGACAC-T--TCATCGG 117
Query 174 AATCACTCCCGAGCTTCTTCCCCCGTCACGCCTCCTCCGCCAGAGCCTTCGTTA-TCAGC 232
||||||||||||| ||| || |||||||||||||||| ||||||||||||| || ||| |
Sbjct 118 AATCACTCCCGAGTTTCCTCTCCCGTCACGCCTCCTCAGCCAGAGCCTTCG-TAGTCATC 176
Query 233 GGCAGACTTCCGGTAACCGATGAACTCCTTTCTCATCTCCCTTCTCTCCAGATTCTCGTC 292
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GGTAGACTTCCGGTAACCGAAGAACTCCTTTCTCATCTCCCTTCTCTCCAGATACTCGTC 236
Query 293 TGCACTAGCGTCGGCATCGATCACATCGATCTCGCCGCATGCAAGCGTCGCG-GCATCGT 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 237 TGCACTAGCGTCGGCATCGATCACATCGATCTCGCCGCATGCAAGCGTCGCGATC-TCGT 295
Query 352 TATCACCAACGCTGGCAACGCGTTTTCCGATGACGTTGCTGATTGTGCCGTCGGTTTGCT 411
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 296 TATCACGAACGCTGGCAACGCGTTTTCCGATGACGTTGCGGATTGTGCCGTCGGTTTGCT 355
Query 412 TATT-AGCGTTCTCCGTCGTATTCCTGCCGCCGATCGTTACGTCCGGTCTGGTAATTGGG 470
| || | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 T-TTAAATGTCCTCCGTCGTATTCCTGCCGCCGATCGTTACGTCCGGTCTGGTAATTGGG 414
Query 471 CGAAATTTGGGGATTTTCAATTAGGGTCCAAGGTAAGTGGGAAGAGAGT-TGGGATAGTT 529
|||||||||||||||||||||||||||||||||| || ||||| ||| | | | |||
Sbjct 415 CGAAATTTGGGGATTTTCAATTAGGGTCCAAGGTTTGTTCGAAGAAAGTCTTTG-TGGTT 473
Query 530 G-GATTGGGGAGCATTGGATCATTTGTTGCTAAAAGACTTGAATCATTTGGCTGTGTTAT 588
| | || || |||||||| |||||||| |||||||||||||| ||||| ||| | ||
Sbjct 474 GTTACAGGTAAG-ATTGGATCCTTTGTTGCCAAAAGACTTGAATCCTTTGGTTGTATCAT 532
Query 589 CTCTTACAACTCAAGGAGTCAGAAACAGAGTAGTCCATACCGGTATTACTCTGACATTCT 648
||||||||||||||| |||||||||||||| |||||||||||||||||| | || |||||
Sbjct 533 CTCTTACAACTCAAGAAGTCAGAAACAGAGCAGTCCATACCGGTATTACCCCGATATTCT 592
Query 649 CTCGTTAGCAG-AGAACAACGATGTACTTGTCCTCTGCTGCTCTTTGACAGACGAAACGC 707
||| ||||||| | |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 593 CTCTTTAGCAGCTG-ACAACGATGTCCTCGTCCTCTGCTGCTCTTTGACAGACGAAACGC 651
Query 708 ACCATATTGTGAATAGAGAAGTGATGGAGTTGCTTGGTAAGGATGGGGTTGTGA-TCAAT 766
|||| ||||||||||||||||||||||||| ||||||| ||||||||||| | | |||||
Sbjct 652 ACCACATTGTGAATAGAGAAGTGATGGAGTCGCTTGGTGAGGATGGGGTTAT-AGTCAAT 710
Query 767 GTGGGACGAGGAAAG-TTGATTGATGAGAAGGAGATGGTCAAGTGTTTGGTTGACGGTGT 825
||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 711 GTGGGACGAGG-AGGTTTGATTGATGAGAAGGAGATGGTGAAGTGTTTGGTTGAAGGTGT 769
Query 826 GATTGGTGGTGCTGGTTTAGATGTGTTTGAGAATGAACCGGCAGTTCCTCAGGAGTTGTT 885
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 770 GATTGGTGGTGCCGGTTTAGATGTGTTTGAGAACGAACCGGCAGTTCCTGAGGAGTTGTT 829
Query 886 TGGTTTGGATAATGTAGTGTTGTCTCCTCATTTTGCTGTGGCTACACCAGGGTCTTTGGA 945
||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 830 TGGTTTGGACAATGTTGTGTTGTCTCCACATTTAGCTGTGGCTACCCCAGGGTCTTTGGA 889
Query 946 CAATGTTGCACAGATTGCTTTAGCTAACTTGAAGGCGTTTTTCTCGAACCGGCCTTTGCT 1005
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CAATGTTGCAGAGATCGCTTTAGCTAACTTGAAGGCGTTTTTCTCGAACCGGCCTTTGCT 949
Query 1006 TTCTCCGGTTCAATTGGATTGAGAGAGCGCCCGGTTTGATCA 1047
||||||||||||||||||||||||||||| |||||||||||
Sbjct 950 TTCTCCGGTTCAATTGGATTGAGAGAGCGTACGGTTTGATCA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5