BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12560.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312278 jgi|Araly1|312278|fgenesh1_pm.C_scaffold_1001058 1227 0.0
> Ahg312278 jgi|Araly1|312278|fgenesh1_pm.C_scaffold_1001058
Length=789
Score = 1227 bits (664), Expect = 0.0
Identities = 748/789 (95%), Gaps = 4/789 (1%)
Strand=Plus/Plus
Query 39 ATGGGTCCAATCTCAAGTTCTTGGAGCTTT-AACAAATTCTTCTCAATAGTTTTCGTTGT 97
||||||||| |||||||||||||||| ||| |||||||||||| | ||||||| ||||||
Sbjct 1 ATGGGTCCAGTCTCAAGTTCTTGGAG-TTTCAACAAATTCTTCGCTATAGTTTGCGTTGT 59
Query 98 TTTCGCCATCTCCGGCGAGTTCGTCGCTGGATACTATCGACCAGGCCCATGGAGATATGC 157
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TTTCGCCATATCCGGTGAGTTCGTCGCCGGATACTATCGACCAGGCCCATGGAGATATGC 119
Query 158 TCACGCCACTTTCTACGGTGACGAGACCGGTGGTGAAACCATGGGTGGTGCATGTGGGTA 217
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TCACGCCACTTTCTACGGTGATGAGACCGGTAGTGAAACCATGGGTGGTGCATGTGGGTA 179
Query 218 CGGAAACCTTTTTAACAGCGGCTACGGACTGTCCACGGCGGCGCTAAGCACGACATTGTT 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGAAACCTTTTTAACAGCGGCTACGGACTGTCCACGGCGGCGCTAAGCACGACATTGTT 239
Query 278 CAATGATGGTTACGGATGCGGCCAATGTTTTCAGATAACATGTTCGAAATCACCGCATTG 337
||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 240 CAAAGATGGTTACGGATGTGGCCAATGTTTTCAAATAACATGTTCGAAATCACCTCATTG 299
Query 338 TTACT-CTGGAAAATCAACAGTGGTCACAGCCACCAATCTTTGCCCTCCTAATTGGTACC 396
||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 TTACTAC-GGAAAATCAACCGTTGTCACAGCCACCAATCTTTGCCCTCCTAATTGGTACC 358
Query 397 AAGACTCCAACGCTGGTGGTTGGTGCAATCCTCCTAGAACCCATTTCGATATGGCTAAAC 456
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGACTCCAACAATGGTGGTTGGTGCAATCCTCCTAGAACCCATTTCGATATGGCTAAAC 418
Query 457 CAGCTTTCATGAAACTCGCTTACTGGAGGGCCGGTATCATCCCAGTTGCATACCGAAGAG 516
| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||
Sbjct 419 CGGCTTTCATGAAACTCGCTAACTGGAAGGCCGGTATCATCCCAGTTGCCTACCGAAGAG 478
Query 517 TGCCATGCCAAAGGAGTGGAGGTATGAGGTTTCAATTCCAAGGTAATTCTTATTGGCTTC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGCCATGCCAAAGGAGTGGAGGTATGAGGTTTCAATTCCAAGGTAATTCTTATTGGCTTC 538
Query 577 TTATCTTCGTCATGAACGTTGGTGGCGCCGGAGACATCAAGAGCATGGCCGTTAAAGGTA 636
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TCGTCTTCGTCATGAACGTTGGTGGCGCCGGAGACATCAAGAGCATGGCCGTGAAAGGTA 598
Query 637 GCCGGACGAATTGGATAAGCATGAGCCACAATTGGGGAGCCTCTTACCAAGCTTTTTCCT 696
|||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 599 GCCGCACAAATTGGATAAGTATGAGCCATAACTGGGGAGCCTCTTACCAAGCTTTTTCCT 658
Query 697 CTCTCTATGGTCAATCTCTCTCTTTCCGGGTCACTTCTTACACCACCGGTGAAACCATCT 756
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 659 CTCTTTACGGTCAATCTCTCTCTTTCCGGGTCACTTCATACACCACCGGTGAAACCGTCT 718
Query 757 ATGCTTGGAACGTTGCTCCGGCTAACTGGAGCGGCGGTAAGACTTACAAGAGCACCGCTA 816
|||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 719 ATGCTTGGAACGTTGCTCCGGCTAACTGGAACGCCGGTATGACTTACAAGAGCACCGCCA 778
Query 817 ATTTCCGTT 825
|||||||||
Sbjct 779 ATTTCCGTT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5