BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12570.1
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911021 jgi|Araly1|911021|Al_scaffold_0001_1275 2771 0.0
> Ahg911021 jgi|Araly1|911021|Al_scaffold_0001_1275
Length=1719
Score = 2771 bits (1500), Expect = 0.0
Identities = 1647/1720 (96%), Gaps = 2/1720 (0%)
Strand=Plus/Plus
Query 110 ATGATGGATAGATTTTGGTCATGGAGATTGTTTGTTGCTC-TCTCTCTTTTTCTCCATTC 168
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 1 ATGATGGATAGATTTTGGTCATGGAGATTGTTTGTTGCTCTTC-CTCTTTTCCTCCATTC 59
Query 169 TCCAATTTGTTCTTCTGACAAAGCTCCGAACTACTCCTTCATGCGGGACGCGACAGGAAG 228
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TCCAATTTGTTCTTCTGACAAAGCTCCAAACTACTCCTTCATGCGGGACGCGACAGGAAG 119
Query 229 TCCTACAACGTCGTACTACGACTATATCATCATCGGTGGTGGGACTGCCGGGTGCCCTCT 288
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 120 TCCAACAACGTCGTACTACGACTATATCATCATCGGTGGTGGGACCGCAGGGTGCCCTCT 179
Query 289 AGCCGCAACGCTGTCTCAAAACGCCAGCGTTTTGCTGCTCGAACGCGGTGACTCACCGTA 348
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 180 AGCCGCAACGCTGTCTCAAAACGCTAGCGTTTTGCTGCTCGAACGCGGTGGCGCACCGTA 239
Query 349 CAATAACCCCAACATCACGAGGCTCTCGGCTTTCGGAGCCGCTCTCTCTGACCTGTCTGA 408
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 240 CAATAACCCTAACATCACGAGCCTATCGGCTTTCGGAGCCGCTCTTTCTGACCTGTCTGA 299
Query 409 GTCCTCACCATCTCAGCGTTTTGTATCAGAAGATGGTGTCATTAATGCACGTGCTCGGGT 468
| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||
Sbjct 300 GACCTCACCATCTCAGCGTTTTGTATCGGAAGACGGCGTCATTAATGCACGTGCTCGAGT 359
Query 469 TCTCGGTGGCGGAAGCGCTCTCAACGCCGGCTTCTATACACGTGCGGGCACTAAATACGT 528
||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 360 TCTGGGCGGCGGAAGCGCTCTCAACGCCGGGTTCTATACACGTGCCGGCACCAAATACGT 419
Query 529 TAGGAACATGGGTTGGGACGGAGCGCTAGCGAACGAGTCGTACCAGTGGGTTGAAGCTAA 588
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TAGGAACATGGGTTGGGACGGAGCGCTAGCGAACGAGTCGTACCAGTGGGTAGAAGCTAA 479
Query 589 GGTGGCGTTTCAGCCTCCGATGGGGCGGTGGCAAACGGCCGTGAGAGACGGCTTATTGGA 648
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGTGGCGTTTCAGCCTCCGATGGGGCGGTGGCAAACCGCCGTGAGAGACGGCTTATTGGA 539
Query 649 GGCTGGGATTGTCCCTAATAATGGTTTCACCTATGATCATATCAATGGCACCAAATTTGG 708
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GGCTGGGATTGTCCCTAATAATGGTTTCACTTATGATCATATCAATGGCACCAAATTTGG 599
Query 709 CGGTACTATTTTTGACCGCAACGGCAATAGACACACCGCCGCCGATTTGTTAGAGTATGC 768
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTACTATTTTTGACCGCAACGGCCATAGACACACCGCCGCCGATTTGTTAGAGTATGC 659
Query 769 CGATCCTAAGGGTATTACCGTCCTTTTGCATGCCACCGTCCACCGGATCTTGTTTCGTAC 828
||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 660 CGACCCTAAGGATATTACCGTCCTTTTGCATGCCACCGTACATCGGATCTTGTTTCGTAC 719
Query 829 TCGAGGTACGACCAAGCCAATAGCCAACGGAGTTGTGTACCGAGACCGGACCGGTCAGGC 888
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TCGAGGTACGACCAAGCCAATAGCCAACGGAGTTGTGTACCGAGACCGGACTGGTCAGGC 779
Query 889 TCATAGAGCTTACCTAAAGGAAGGCGCCTTGAGTGAGATCATCCTATCGGCCGGAACCCT 948
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TCACCGAGCTTACCTAAAGGAAGGCGCATTGAGTGAGATCATCCTATCGGCCGGAACCCT 839
Query 949 AGGGAGCCCACAACTTCTTATGCTAAGTGGTGTTGGCCCATCGGCTCAATTACAGGCCCA 1008
||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||
Sbjct 840 AGGGAGCCCACAACTTCTTATGCTAAGCGGTGTCGGCCCATTGGCTCAATTAGAGGCCCA 899
Query 1009 AAACATCACGGTGGTGATGGACCAGCCTCATGTGGGTCAAGGCATGTATGACAACCCTAT 1068
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 AAACATCACGGTGGTGATGGACCAGCCTCATGTGGGTCAAGACATGTATGACAACCCTAT 959
Query 1069 GAATGCCGTGTTCGTTCCTTCTCCAGTCCCCGTTGAGGTCTCACTCATTGAGGTTGTTGG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAATGCCGTGTTCGTTCCTTCTCCAGTCCCCGTTGAGGTCTCACTCATTGAGGTTGTTGG 1019
Query 1129 GATTACCGGGGAAGGAACATATGTCGAAGCCGCCGGTGGTGAAAATTTTGGCGGAGGTGG 1188
|||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||||||
Sbjct 1020 CATTACCGGCGAAGGAACATATATCGAAGCTGCCGGTGGCGAAAATTTTGGAGGAGGTGG 1079
Query 1189 TGGTGGTTCTAGTGGATCGTCCTCCACTAGAGACTACTATGCAATGTTTTCACCAAGGGC 1248
||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGTGGTTCTACTGGATCCTCCAGTACTAGAGACTACTATGCAATGTTTTCACCAAGGGC 1139
Query 1249 AACATTATTAGAGTCAAATTCAATGACCAAATTATCATCAGCCCAACCTTTTCAAGGAGG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AACATTATTAGAGTCAAATTCAATGACCAAATTATCATCAGCCCAACCTTTTCAAGGAGG 1199
Query 1309 CTTCCTTTTAGAGAAAGTAATGGGCCCATTATCAACGGGTCATTTAGAGCTCAAGACCCG 1368
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1200 CTTCCTTTTAGAGAAAGTAATGGGCCCACTATCAACGGGTCATTTAGAGCTCAAGACTCG 1259
Query 1369 AAACCCAAAAGATAACCCGATTGTGACTTTCAACTATTTCCAACATCCTGACGACCTAAA 1428
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 AAACCCAAAAGATAACCCGGTTGTGACTTTCAACTATTTCCAACATCCGGACGACCTAAA 1319
Query 1429 ACGTTGTGTTCGAGGAATCCAAACCATAGAGAGAGTCGTGCAATCTAAAGCTTTTTCGAG 1488
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1320 ACGTTGTGTTCGAGGGATCCAAACCATAGAGAGAGTCGTGCAATCTAAAGCGTTTGCGAG 1379
Query 1489 GTATAAGTACGCAGATGTGTCATTTGAGTATTTACTTAACCTCACGGCGAGTACTCCTGT 1548
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1380 GTATAAGTACGCAGATATGTCATTTGAGTATTTACTTAACCTCACCGCGAGTACCCCGGT 1439
Query 1549 CAATCTAAGGCCGCCTCGCAGTGGTCCTGGAGCCTCGTTGCCTCCATCCGCAGAGGAATT 1608
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 CAATCTAAGGCCGCCTCGTAGCGGTCCTGGAGCCTCGTTGCCTCCATCCGCTGAGGAATT 1499
Query 1609 TTGCCAACATACAGTTACAACCATTTGGCATTACCATGGAGGATGCGTTGTGGGCAGAGT 1668
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1500 TTGCCAGCATACAGTTACAACCATTTGGCATTACCATGGAGGATGCATTGTGGGCAGAGT 1559
Query 1669 GGTCGATGGGGATTATAAAGTTATTGGTATCGACCGGCTTAGAGTCATTGATATGTCGAC 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGTCGATGGGGATTATAAAGTTATTGGTATCGACCGGCTTAGAGTCATTGATATGTCGAC 1619
Query 1729 CGTTGGTTATTGTCCCGGGACAAATCCTCAAGCCACGGTTATGATGCTTGGCAGGTATAT 1788
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1620 CGTTGGTTATTGTCCCGGGACAAACCCTCAAGCCACGGTTATGATGCTTGGCAGGTACAT 1679
Query 1789 GGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAG 1828
|||||||| |||| ||||||||||||||||||||||||||
Sbjct 1680 GGGTGTGAGGATCCTGAGAGAGAGACTCACCAAGAAGTAG 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76218580245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5