BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12580.1
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471407 jgi|Araly1|471407|fgenesh2_kg.1__1361__AT1G12580.1 2833 0.0
> Ahg471407 jgi|Araly1|471407|fgenesh2_kg.1__1361__AT1G12580.1
Length=1933
Score = 2833 bits (1534), Expect = 0.0
Identities = 1834/1973 (93%), Gaps = 44/1973 (2%)
Strand=Plus/Plus
Query 4 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTG-TTTGCTCTTCGACGGG 62
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTGTTTTGCTCTTCGACGGG 60
Query 63 ATTCTCACTACTCTTTTGCCaaaaaaaaGAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 122
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 61 ATTCTCACTACTCTTTTGCAAAAAAAAAAAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 120
Query 123 GCGATTTCATAGAAAAGAAGATTCGTTTGCTGGATTAGGCTTATTTGTGTATCATAGCTT 182
|||||||||| ||| ||||||||| ||| |||||||||||| ||| |||| ||| ||
Sbjct 121 GCGATTTCATCGAAGAGAAGATTCACCTGCCGGATTAGGCTTAATTGGGTATTATAACTG 180
Query 183 TGAGGTTTTAACTGAGATTTATTGATAGTGGAACTTAGGTTTTCGAGAGGTGTGAACAGT 242
| || || || |||||| | || || | | | |||| | || | || |
Sbjct 181 TAAGATTGTACCTGAGA--T-TT-AT--T-G--C-TAGG---T-GA-A--CGT------T 217
Query 243 TGGGTATATGGGTATGGACATAGCTGATAAGGAGAATACGAGCCCGCTTTTATTTGAATT 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 218 TGGGTATATGGGTATGGACATAGCTGATAAAGAGAATACGAGCCCGCTTTTATTTGAATT 277
Query 303 CTGCAATTGCTATAAAGTTGCAAGCCTTACTGAAACCATTCTAAACCCTGTAAATGTTTC 362
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 278 CTGCAATTGTTATAAAGTTGCTAGCCTTACTGAAACCATTCTAAACCCGGTAAATGTTTC 337
Query 363 CAACTTAAAAGATAGATATGTACTTGGAGAACAGTTAGGCTGGGGTCAGTTTGGTGTGAT 422
||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 338 CAACTTAAAAGATCGATATGTGCTTGGAGAACAGTTAGGTTGGGGTCAGTTTGGTGTGAT 397
Query 423 AAGAGTATGTTCTGATAAGTTAACTGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 398 AAGAGTATGTTCTGATAAGTTAACAGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 457
Query 483 CAGACTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATAATGGCCAA 542
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 458 CAGATTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATTATGGCCAA 517
Query 543 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTACGAGGAGAAAGATTCTGT 602
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 518 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTATGAGGAGAAAGATTATGT 577
Query 603 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTCGAGAAATATGG 662
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 578 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTTGAGAAATATGG 637
Query 663 AAGGTATTCTGAGGTTCGTGCTAGGGTGCTCTTCAAGCACTTGATGCAAGTGGTCAAGTT 722
||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 638 AAGGTATTCAGAGTTTCGTGCTAGGGTACTCTTCAAGCATTTGATGCAAGTGGTCAAGTT 697
Query 723 TTGTCATGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 782
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTGTCACGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 757
Query 783 AATGTCTTCTTCGTCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 842
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AATGTCTTCTTCATCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 817
Query 843 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCGGAAGTGTTAGC 902
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 818 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCTGAAGTGTTATC 877
Query 903 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTATATTCTTCT 962
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 878 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTACATTCTTCT 937
Query 963 CAGTGGAGCGCCGCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 1022
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CAGTGGAGTGCCTCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 997
Query 1023 TGCCGATTTGAGATTTTCTGCAGAGCCATGGGACAATATAACTTCATACGCCAAGGATTT 1082
||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 998 TGCAGATTTGAGATTTTCTGCAGAGCCATGGGACCATATAACTTCATATGCTAAGGATTT 1057
Query 1083 GATTCGCGGGATGCTTTGTGTGGATCCTTCCCAAAGGTTATCAGCTGACGAAGTTCTAGC 1142
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 1058 GATCCGCGGGATGCTTTGTGTTGATCCTTCCCAAAGATTATCAGCTGATGAAGTTCTGGC 1117
Query 1143 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1177
Query 1203 TGGTTGTGAAGGATTGGAGAATGGGGGATGTTCTTTCTCCACACAATGCGTTTCTCGGGA 1262
|||||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| ||
Sbjct 1178 TGGTTGTGAAGGATTGGATAATGGGGGTTGTTCTTTTTCCACCCAATGCATTTCTCGCGA 1237
Query 1263 ACAAGACTATAGCTTTAGCGTTGGCCAGTTAGAGCAATCAACAGATAACGATTTTAAATC 1322
|||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||
Sbjct 1238 ACAAGACTATAGCTTTAGTGTTGGTCAGTTAGAGCAATCAACAGATAACGAGTGTAAATC 1297
Query 1323 ATCGTTCTCGACATTCCTACCTGCGGATAACACACTGCCAAATTCCGGTTTTGATGGGTT 1382
|||||||||| | |||||||||| |||| | |||||||||||||||||||||| ||||||
Sbjct 1298 ATCGTTCTCGTCTTTCCTACCTGTGGATGATACACTGCCAAATTCCGGTTTTGGTGGGTT 1357
Query 1383 TTCTTTTGATGGGAAACAACCGGAATCAACCACAGCTGGCTTCTCATCAACTGGAATTCC 1442
|||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1358 TTCTTTTGATGGAAAACAACCGGAATCAACCTCAGCTTGCTTCACATCAACTGGAATTCC 1417
Query 1443 CTCTATGCCAAGCTTTACCtttttttGTACAAGCCCAGCAAGGACACAGAACAACGACAT 1502
||||||||||||||||||||||||| || ||| |||||| | ||||||||||||| ||||
Sbjct 1418 CTCTATGCCAAGCTTTACCTTTTTTAGTCCAATCCCAGCGACGACACAGAACAACAACAT 1477
Query 1503 AA-CTGAAATAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1561
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 AAGC-GAAACAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1536
Query 1562 ATTCTTCTTCACAACTTGAGAGGCGTGATGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1621
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1537 ATTCTTCTTCACAACTTGAGAGACGCGAGGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1596
Query 1622 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTACACAGCA 1681
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1597 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTCCACAGCA 1656
Query 1682 AAAGGAACAGAACAATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1741
|||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 AAAGAAACCGGACCATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1716
Query 1742 CAGAGTCGATAATCAGATGGGCATCTTGCACGCATATTCCCACCGCTCCATCTCTCAGAT 1801
||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1717 CAGCGTCGATAATCAGATGGGCATCTTGCACCCATATTCCCACGGCTCCATCCCTCAGAT 1776
Query 1802 TGTCGCTCGTCTGCTAGAAGAAGAAAACGAAGAAGACAACTGTTATCAGTAAAATATTGT 1861
||||||||||||||||||| | || | || | ||||||||||| ||||| |
Sbjct 1777 TGTCGCTCGTCTGCTAGAA-A-GA---C-AA-----C---TGTTATCAGTATAATATA-T 1821
Query 1862 ATGTACACATCTGATTTTGTCCCTGCAATGTCTTTGTTTTTGTAGTAAAACTTTTCCATG 1921
||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 1822 -TGTACACATCTGATTTTGTTCGTGCAATGTCTTTGTTTTTGTAGTAAAACATTTCCATG 1880
Query 1922 GAAACTGACCTCAAC-TGTATAAACCAA-CGGAAATAGAGTGTGATTTTGATC 1972
||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1881 GAAACTGACCTCAACCTGTATAAACCAAGCGGAAATAGAGTGTGATTTTGATC 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74123616770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5