BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12600.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920096 jgi|Araly1|920096|scaffold_101377.1 1740 0.0
> Ahg920096 jgi|Araly1|920096|scaffold_101377.1
Length=1091
Score = 1740 bits (942), Expect = 0.0
Identities = 1037/1083 (96%), Gaps = 6/1083 (1%)
Strand=Plus/Plus
Query 1 TATTCtttttttCAAGATCATGAAGACTAACAGCGAAGAACAAATGATAAAACTGTTTGG 60
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 TATT-TTTCTTTCAAGATCATGAAGATTAACAGCGAAGAACAAATGATAAAACTGTTTGG 61
Query 61 AATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGG-TTTCT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 62 AATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGGATTT-T 120
Query 120 TCTTTGGTTACCTCGTTAATGGCATCTGCGAGGAATATGTGTACAACCGGCTTAAATTCA 179
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TCTTTGGTTATCTTGTTAATGGCATCTGTGAGGAATATGTGTACAACCGGCTTAAATTCA 180
Query 180 GTTATGGATGGTATTTCACGTTTGCGCAAGGATTGGTGTACATTGCCT-TGATTTACATG 238
||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 181 GTTATGGATGGTATTTCACGTTTGCGCAAGGATTGGTGTACATTG-CTCTCATTTACATA 239
Query 239 TATGGCTTCAGGACGAAGCAAATGGTTAATCCATGGAAGACTTACGTGAAACTATCTGGT 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TATGGCTTCAGGACGAAGCAAATGGTGAATCCATGGAAGACTTACGTGAAACTATCTGGT 299
Query 299 GTTCTTATGGGTTCTCATGGCCTCACCAAAGGCTCCTTGGCTTATCTCAATTATCCTGCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTCTTATGGGTTCTCATGGCCTCACCAAAGGCTCCTTGGCTTATCTCAATTATCCTGCT 359
Query 359 CAAATCATGTTCAAATCCACTAAGGTTTTGCCGGTTATGGTTATGGGAGCTTTTATACCA 418
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 360 CAAATCATGTTCAAATCCACTAAGGTTTTACCGGTTATGGTAATGGGAGCTTTTATACCA 419
Query 419 GGGTTGAGAAGAAAATACCCTGTCCACGAGTACATATCTGCTATGTTACTTGTAATTGGT 478
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 420 GGGTTGAGAAGAAAATACCCTGTCCACGAGTACATATCGGCTATGCTACTTGTAATTGGT 479
Query 479 CTCATCTTATTCACATTGGCTGATGCCCATACCTCCCCAAACTTCAGTATAATTGGGGTT 538
|| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CTGATCATATTCACATTAGCTGATGCCCATACCTCCCCAAACTTCAGTATAGTTGGGGTT 539
Query 539 ATGATGATCTCGGGCGCTCTCATCATGGACGCTTTTCTTGGTAACTTACAAGAAGCTATC 598
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 540 GTGATGATCTCGGGCGCTCTCATCATGGACGCTTTTCTCGGTAACTTGCAAGAAGCTATC 599
Query 599 TTCACGATGAATCCTGAGACAACACAAATGGAGATGTTGTTTTGCTCGACGGTAGTTGGC 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 TTCACGATGAATCCTGAGACAACACAAATGGAGATGTTGTTCTGCTCGACGGTAGTTGGC 659
Query 659 TTACCGTTCTTACTTGCACCGATGATTCTTACTGGAGAGCTTTTCACAGCTTGGAATTCA 718
|||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||
Sbjct 660 TTACCGTTCTTACTTGCACCAATGTTTCTTACCGGAGAGCTTTTCAGAGCTTGGAATTCA 719
Query 719 TGTGCTCAACATCCATATGTGTATGGAGTGTTGGTGTTCGAAGCCATGGCTACATTTATC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTGCTCAACATCCATATGTGTATGGAGTGTTGGTGTTCGAAGCCATGGCTACATTTATC 779
Query 779 GGACAAGTCTCCGTTCTATCCCTCATTGCACTCTTTGGCGCAGCCACAACCGCTATGATA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGACAAGTCTCCGTTCTATCCCTCATTGCACTCTTTGGCGCAGCCACAACCGCTATGATA 839
Query 839 ACGACGGCGAGAAAAGCGGTAACGCTGTTACTGTCCTATTTGATATTCACAAAGCCTTTA 898
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 ACGACGGCGAGAAAAGCGGTAACGCTGTTACTGTCCTACTTGATATTCACAAAGCCTTTA 899
Query 899 ACTGAACAGCACGGTACGGGATTGTTACTCATCTTTATGGGCATTATTCTCAAGATGGTT 958
|| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 ACGGAACAGCACGGCACAGGATTGTTACTCATCTCTATGGGCATTATTCTCAAGATGGTT 959
Query 959 CCGGATCCAAACCCAAACCCCAAATCTTCGGGTTCGGGTCAGACACCCGGAAAATTGGAA 1018
|| |||||||| |||||| | ||||||||||||||| ||||||||||||| || ||||||
Sbjct 960 CCTGATCCAAATCCAAACACGAAATCTTCGGGTTCGAGTCAGACACCCGGGAAGTTGGAA 1019
Query 1019 CGGGTTAAGTTTGAGAAGGAAGACGATGAAGAGAGTCGTCCATTGGTCTAATAAACGACG 1078
||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 1020 CGGGTTAAGTTTGAGAAGGAAGACGATGAAGAGAGCCGGCCTTTGGTCTAATAC-CGACG 1078
Query 1079 AGA 1081
|||
Sbjct 1079 AGA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5