BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12610.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471409 jgi|Araly1|471409|fgenesh2_kg.1__1363__AT1G12610.1 1024 0.0
> Ahg471409 jgi|Araly1|471409|fgenesh2_kg.1__1363__AT1G12610.1
Length=889
Score = 1024 bits (554), Expect = 0.0
Identities = 664/717 (93%), Gaps = 8/717 (1%)
Strand=Plus/Plus
Query 154 TTTTCCGGCGAATTTTTGGTACTT-TGAGTTATGAATAATGATGATATTATTCTGGCGGA 212
|||||||||| |||||| | |||| ||||||||||| |||||||| ||||| |||||||
Sbjct 97 TTTTCCGGCG-ATTTTTTGCACTTCTGAGTTATGAACAATGATGAGCTTATTTTGGCGGA 155
Query 213 GATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTA 272
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 GATGAGACCAAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTA 215
Query 273 CAGAGGCATAAGGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCA 332
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 216 CAGAGGAATAAGGCGGAGGAACGGCGACAAATGGGTCTGCGAAGTCAGAGAGCCGACGCA 275
Query 333 CCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCGTGCACACGA 392
||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 276 CCAACGCCGCATTTGGCTCGGGACTTATCCCACCGCGGATATGGCGGCGCGTGCTCACGA 335
Query 393 CGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTG 452
||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 336 CGTGGCGGTTTTAGCTCTGCGCGGGAGATCTGCGTGTTTGAATTTCGCAGACTCCGCTTG 395
Query 453 GCGGCTTCCGGTGCCGGAATCCAATGATCCGGATGTGATAAGAAGAGTTGCGGCGGAAGC 512
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GCGGCTCCCGGTGCCGGAATCCAATGATCCGGATGTGATAAGAAGAGTTGCGGCGGAAGC 455
Query 513 TGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGG 572
|||||||||||||||||||| ||||||| ||||||||||||||||||||| | | |||
Sbjct 456 AGCGGAGATGTTTAGGCCGGTAGATTTAGGAAGTGGAATTACGGTTTTGCCCTCTTTGGG 515
Query 573 AGATGATGTGGATTTGGGTTTTGGTTCGGGTTCCGGCTCTGGTTCGGGATCGGAGGAGAG 632
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 516 AGATGATGTGGATTTGGGTTTTGGTTCGGGTTCTGGCTCTGGTTCGGGATCAGAGGAGAG 575
Query 633 GAATTCTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGATGATGAGACT 692
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 576 GAATTCTTCTTCGTATGCATTTGGAGACTACGAAGAAGTGTCCACGACGATGATGAGACT 635
Query 693 CGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAA 752
|||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 636 CGCGGAGGAGCCATTAATGTCGCCTCCGCGATCGTATACGGAAGACATGACTCCTAGTAA 695
Query 753 TGTTTACACGGAAGAAGAGATGTGTTATGAAGATATGTCATTGTGGAGTTACAGATATTA 812
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 696 TGTTTACACGGAAGAAGAGATGTGTTATGAAGATATATCACTGTGGAGTTACAGTTATTA 755
Query 813 AGTGGGACTCAC--A--TATCTACTATACATAATATTTAGCTTTTATGTAAGA-GGT 864
|||||||||||| | ||||||||||| ||| ||| ||| ||||| || ||| |||
Sbjct 756 AGTGGGACTCACTCACATATCTACTATATATATTATATAGTTTTTA-GTTAGAAGGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5