BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12630.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value Ahg312283 jgi|Araly1|312283|fgenesh1_pm.C_scaffold_1001063 859 0.0 Ahg920109 jgi|Araly1|920109|scaffold_101390.1 846 0.0 > Ahg312283 jgi|Araly1|312283|fgenesh1_pm.C_scaffold_1001063 Length=579 Score = 859 bits (465), Expect = 0.0 Identities = 542/580 (93%), Gaps = 2/580 (0%) Strand=Plus/Plus Query 9 ATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGA 68 ||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGAATAATACAATGGCTTCTTCCGGCTTAGGTAGCCGGAGAAAGGATCCGGCGTACAGA 60 Query 69 GGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGAAAACCACG 128 |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct 61 GGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGAAAACCACG 120 Query 129 AGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCT 188 ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| Sbjct 121 AGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACGATGTGGCT 180 Query 189 GCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATAC 248 ||| |||||||||||||||||| ||| |||||||||||||||||||||| | ||||||| Sbjct 181 GCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCCAGTCATAC 240 Query 249 CCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCA 308 |||||||||||||||| ||| ||||| ||||||||| |||| |||||||| ||||||||| Sbjct 241 CCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTGCAGCAGCA 300 Query 309 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGAGTAGTAGT 368 ||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||| Sbjct 301 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGATGAATAGTAGTAGT 360 Query 369 TCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTCGTCGTGGTG 427 ||| ||| ||||||||||||| |||||||| ||||||||| ||| |||||||| ||||| Sbjct 361 TCGCAGTTGAGAGCGCGTGAGAGCCACGTAAATAATGATG-TGGCTTCTTCGTCATGGTG 419 Query 428 TGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATAT 487 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 420 TGGGACAGAGTTTATGGACGAAGAAGAAGTCTTAAATATGCCTAATCTGCTGGCTAATAT 479 Query 488 GGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 547 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 GGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 539 Query 548 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA 587 |||||||||||||||||||||||||||||||||||| ||| Sbjct 540 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTACTGA 579 > Ahg920109 jgi|Araly1|920109|scaffold_101390.1 Length=609 Score = 846 bits (458), Expect = 0.0 Identities = 546/589 (93%), Gaps = 4/589 (1%) Strand=Plus/Plus Query 1 CTAATAGTATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGG 60 ||||||||||||||| | |||||| |||| || ||||||||||||||||||||||||||| Sbjct 1 CTAATAGTATGAATAATACAATGGGTTCTTCCAGCTTAGGTAGCCGGAGAAAGGATCCGG 60 Query 61 TGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGA 120 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 61 CGTACAGAGGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGA 120 Query 121 AAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATG 180 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | Sbjct 121 AAACCACGAGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACG 180 Query 181 ATGTGGCTGCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCG 240 ||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | Sbjct 181 ATGTGGCTGCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCC 240 Query 241 GGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCG 300 ||||||||||||||||||||||| ||| ||||| ||||||||| |||| |||||||| | Sbjct 241 AGTCATACCCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTG 300 Query 301 CAGCAGCAATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGA 360 ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| | Sbjct 301 CAGCAGCAATGAAGGGATGCGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGAAGAATA 360 Query 361 GTAGTAGTTCGAAG-TCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTC 418 |||||| |||| || || |||||||||||| ||||||| ||||||| | ||| ||||| Sbjct 361 GTAGTATTTCGCAGTTC-AGAGCGCGTGAGAACCACGTAAATAATGA-GGTGGCGTCTTC 418 Query 419 GTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT 478 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 419 GTCATGGTGTGGGACAGAGTTTATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT 478 Query 479 GGCTAATATGGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTC 538 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 479 GGCTAATATGGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTC 538 Query 539 GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA 587 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 539 GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGGTATTGA 587 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21481596607 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5