BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12630.1
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312283 jgi|Araly1|312283|fgenesh1_pm.C_scaffold_1001063 859 0.0
Ahg920109 jgi|Araly1|920109|scaffold_101390.1 846 0.0
> Ahg312283 jgi|Araly1|312283|fgenesh1_pm.C_scaffold_1001063
Length=579
Score = 859 bits (465), Expect = 0.0
Identities = 542/580 (93%), Gaps = 2/580 (0%)
Strand=Plus/Plus
Query 9 ATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGGTGTACAGA 68
||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAATAATACAATGGCTTCTTCCGGCTTAGGTAGCCGGAGAAAGGATCCGGCGTACAGA 60
Query 69 GGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGAAAACCACG 128
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 61 GGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGAAAACCACG 120
Query 129 AGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATGATGTGGCT 188
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 121 AGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACGATGTGGCT 180
Query 189 GCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCGGGTCATAC 248
||| |||||||||||||||||| ||| |||||||||||||||||||||| | |||||||
Sbjct 181 GCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCCAGTCATAC 240
Query 249 CCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCGCAGCAGCA 308
|||||||||||||||| ||| ||||| ||||||||| |||| |||||||| |||||||||
Sbjct 241 CCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTGCAGCAGCA 300
Query 309 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGAGTAGTAGT 368
||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||
Sbjct 301 ATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGATGAATAGTAGTAGT 360
Query 369 TCGAAGTCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTCGTCGTGGTG 427
||| ||| ||||||||||||| |||||||| ||||||||| ||| |||||||| |||||
Sbjct 361 TCGCAGTTGAGAGCGCGTGAGAGCCACGTAAATAATGATG-TGGCTTCTTCGTCATGGTG 419
Query 428 TGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCTGGCTAATAT 487
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TGGGACAGAGTTTATGGACGAAGAAGAAGTCTTAAATATGCCTAATCTGCTGGCTAATAT 479
Query 488 GGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 547
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTCGGATGACTC 539
Query 548 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA 587
|||||||||||||||||||||||||||||||||||| |||
Sbjct 540 TCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTACTGA 579
> Ahg920109 jgi|Araly1|920109|scaffold_101390.1
Length=609
Score = 846 bits (458), Expect = 0.0
Identities = 546/589 (93%), Gaps = 4/589 (1%)
Strand=Plus/Plus
Query 1 CTAATAGTATGAATAGTTCAATGGCTTCTGCCGGCTTAGGTAGCCGGAGAAAGGATCCGG 60
||||||||||||||| | |||||| |||| || |||||||||||||||||||||||||||
Sbjct 1 CTAATAGTATGAATAATACAATGGGTTCTTCCAGCTTAGGTAGCCGGAGAAAGGATCCGG 60
Query 61 TGTACAGAGGAATCCGGTGCCGAAGTGGGAAATGGGTCTCCGAGATTCGTGAGCCGAGGA 120
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 61 CGTACAGAGGAATCCGGTGCCGAAGTGGTAAATGGGTCTCCGAGATTCGTGAGCCTAAGA 120
Query 121 AAACCACGAGAATCTGGCTTGGAACTTACCCCATGGCAGAGATGGCAGCAGCCGCCTATG 180
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 121 AAACCACGAGAATCTGGCTTGGAACTTACCCCACGGCAGAGATGGCAGCCGCCGCCTACG 180
Query 181 ATGTGGCTGCTATGGCTCTTAAAGGAAGAGAAGCTGTCTTGAACTTCCCTGGATCCGTCG 240
||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 181 ATGTGGCTGCTCTGGCTCTTAAAGGAAGAGGAGCCGTCTTGAACTTCCCTGGATCCGCCC 240
Query 241 GGTCATACCCGGTTCCTGAATCAACATCCGCAGCAGATATACGAGCCGCTGCGGCAGCCG 300
||||||||||||||||||||||| ||| ||||| ||||||||| |||| |||||||| |
Sbjct 241 AGTCATACCCGGTTCCTGAATCAAAATCGGCAGCGGATATACGAACCGCGGCGGCAGCTG 300
Query 301 CAGCAGCAATGAAGGGATGTGAGGAAGGGGAGGAGGAGAAAAAGGCAAAGGAGAAGAAGA 360
||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
Sbjct 301 CAGCAGCAATGAAGGGATGCGAGGAAGGGGAGGAGGAGAAAGAGGCAACGGAGAAGAATA 360
Query 361 GTAGTAGTTCGAAG-TCGAGAGCGCGTGAGTGCCACGTAGATAATGATGTTGG-ATCTTC 418
|||||| |||| || || |||||||||||| ||||||| ||||||| | ||| |||||
Sbjct 361 GTAGTATTTCGCAGTTC-AGAGCGCGTGAGAACCACGTAAATAATGA-GGTGGCGTCTTC 418
Query 419 GTCGTGGTGTGGGACAGAGTTCATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT 478
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTCATGGTGTGGGACAGAGTTTATGGACGAAGAAGAAGTCTTGAATATGCCTAATCTGCT 478
Query 479 GGCTAATATGGCAGAAGGGATGATGGTTGCGCCGCCGTCGTGGATGGGTTCTCGGCCGTC 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 GGCTAATATGGCAGAAGGGATGATGGTTGCGCCACCGTCGTGGATGGGTTCTCGGCCGTC 538
Query 539 GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGCTATTGA 587
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 GGATGACTCTCCGGAGAATTCAAATGATGAGGACTTGTGGGGGTATTGA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21481596607
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5