BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12640.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920110 jgi|Araly1|920110|scaffold_101391.1 2357 0.0
Ahg911026 jgi|Araly1|911026|Al_scaffold_0001_1280 1535 0.0
Ahg924677 jgi|Araly1|924677|scaffold_200238.1 1328 0.0
> Ahg920110 jgi|Araly1|920110|scaffold_101391.1
Length=1432
Score = 2357 bits (1276), Expect = 0.0
Identities = 1380/1432 (96%), Gaps = 0/1432 (0%)
Strand=Plus/Plus
Query 110 aaaaaaaaCGGGTTTTCGACACCATGGATATGAGTTCAATGGCTGGTTCAATCGGAGTTT 169
|||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 1 AAAAAAAACGGGTTTTTGACACCATGGATATGAGTTCCATGGCTGCTTCGATCGGAGTTT 60
Query 170 CGGTAGCCGTACTCCGATTCCTCCTCTGTTTCGTTGCCACGATCCCTGTTTCATTCGCTT 229
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CGGTCGCCGTTCTCCGATTCCTCCTCTGTTTCGTTGCCACGATCCCTGTTTCATCCGCTT 120
Query 230 GTCGAATCGTCCCGAGTAGACTCGGTAAACACTTGTATGCCGCTGCTTCAGGTGCTTTCC 289
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCGAATCGTCCCGAGTCGACTCGGTAAACACTTGTATGCCGCTGCTTCAGGTGCTTTCC 180
Query 290 TCTCTTACCTCTCCTTTGGCTTCTCCTCCAACCTTCACTTCCTTGTTCCGATGACGATCG 349
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTTATCTGTCCTTTGGATTCTCCTCCAACCTTCACTTCCTTGTTCCGATGACGATCG 240
Query 350 GATATGCTTCAATGGCGATTTATAGACCCAAGTGTGGAATCATCACTTTCTTCCTCGGTT 409
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTATGCTTCAATGGCGATTTATAGACCCAAGTGTGGAATCATCACTTTCTTCCTCGGTT 300
Query 410 TCGCTTATCTTATTGGCTGTCATGTGTTTTATATGAGTGGTGATGCGTGGAAAGAAGGAG 469
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGGTTATCTTATTGGCTGTCATATGTTTTATATGAGTGGTGATGCGTGGAAAGAAGGAG 360
Query 470 GAATCGATTCTACTGGAGCGTTAATGGTGTTGACGCTGAAAGTCATCTCATGTTCAATGA 529
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| | ||||
Sbjct 361 GAATCGACTCTACTGGAGCGTTAATGGTGTTAACGCTGAAAGTTATCTCATGTGCGATGA 420
Query 530 ATTACAATGATGGGATGTTGAAGGAGGAAGGTCTACGTGAAGCTCAGAAGAAAAACAGAT 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ATTACAATGATGGGATGTTGAAGGAGGAAGGTCTACGTGAAGCTCAGAAGAAAAACCGAT 480
Query 590 TGATTCAGATGCCGTCTTTGATTGAGTACTTTGGTTACTGCCTTTGTTGTGGTAGCCATT 649
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 TGATTCAGATGCCATCTTTGATTGAGTACTTTGGTTACTGCCTCTGTTGTGGTAGCCATT 540
Query 650 TTGCTGGTCCTGTTTATGAAATGAAAGATTATCTTGAATGGACCGAAGGGAAAGGGATTT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGCTGGTCCTGTTTATGAAATGAAAGATTATCTTGAATGGACCGAAGGGAAAGGGATTT 600
Query 710 GGGATACTACTGAGAAAAGAAAGAAGCCATCGCCTTATGGAGCTACAATCCGAGCTATTT 769
|||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 GGGATACTTCTGAAAAAAGAAAGCGGCCATCGCCTTATGGAGCTACAATCCGAGCTATTT 660
Query 770 TGCAAGCTGCGATTTGCATGGCTCTGTATCTCTATTTAGTGCCTCAATATCCGTTAACTC 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCAAGCTGCGATTTGCATGGCTCTGTATCTCTATTTAGTGCCTCAATATCCGTTAACTC 720
Query 830 GGTTCACAGAACCAGTGTATCAAGAATGGGGATTCTTGAGAAAATTTAGTTACCAATACA 889
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 GGTTCACAGAACCCGTGTATCAAGAATGGGGTTTCTTGAGAAAATTTAGTTACCAATACA 780
Query 890 TGGCTGGATTCACGGCTCGTTGGAAGTATTACTTCATCTGGTCAATTTCAGAGGCTTCTA 949
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TGGCGGGATTCACGGCCCGTTGGAAATATTACTTCATCTGGTCAATTTCAGAGGCTTCTA 840
Query 950 TTATCATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATGATGCTTCACCAAAGCCCAAAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTATCATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATGATGCTTCACCAAAGCCCAAAT 900
Query 1010 GGGACCGTGCCAAGAACGTAGATATTCTCGGTGTTGAACTAGCTAAGAGCGCGGTTCAGA 1069
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 901 GGGACCGTGCCAAGAACGTAGACATTCTCGGTGTCGAACTAGCTAAGAGCGCTGTTCAGA 960
Query 1070 TTCCACTTGTGTGGAACATACAAGTCAGCACGTGGCTCCGTCACTATGTGTATGAGAGAC 1129
|||| ||||| |||||||||||||||||||||||| | |||||||| ||||| || ||||
Sbjct 961 TTCCGCTTGTATGGAACATACAAGTCAGCACGTGGTTGCGTCACTACGTGTACGAAAGAC 1020
Query 1130 TTGTGCAGAACGGAAAGAAAGCGGGTTTCTTCCAGTTACTAGCTACACAAACCGTCAGCG 1189
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1021 TTGTGCAGAACGGAAAGAAAGCGGGTTTCTTCCAGTTATTAGCTACACAAACCGTCAGTG 1080
Query 1190 CGGTTTGGCATGGACTGTATCCTGGATATATGATGTTCTTTGTTCAGTCAGCTTTGATGA 1249
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGGTTTGGCATGGACTATATCCTGGATATATGATGTTCTTTGTTCAGTCAGCTTTGATGA 1140
Query 1250 TCGCAGGCTCACGGGTTATTTACCGGTGGCAACAAGCGATCAGTCCGAAAATGGCAATGC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCGCAGGCTCACGGGTTATTTACCGGTGGCAACAAGCGATCAGTCCGAAAATGGCAATGC 1200
Query 1310 TGAGAAATATAATGGTCTTCATCAACTTCCTTTACACTGTTTTGGTTCTCAACTACTCAG 1369
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1201 TGAGAAATATACTGGTCTTCATCAACTTCCTTTACACCGTTTTGGTTCTCAACTACTCAG 1260
Query 1370 CCGTCGGTTTCATGGTGTTAAGCTTGCACGAAACACTTACCGCCTACGGAAGCGTATATT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCGTCGGTTTCATGGTGTTAAGCTTGCACGAAACACTTACCGCCTACGGAAGCGTATATT 1320
Query 1430 ACATTGGAACAATCATACCTGTTGGATTGATTCTCCTCAGTTACGTTGTGCCTGCAAAAC 1489
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1321 ACATTGGAACAATCATACCTGTTGTATTGATTCTCCTCAGTTACGTTGTGCCTGCAAAAC 1380
Query 1490 CTTCAAGACCAAAACCGCGTAAAGAAGAATAAGCAGTTATCTTCTTCTCTTA 1541
|||||||||||||||| || ||||| |||||| ||||| |||||||||||||
Sbjct 1381 CTTCAAGACCAAAACCACGGAAAGAGGAATAAACAGTTCTCTTCTTCTCTTA 1432
> Ahg911026 jgi|Araly1|911026|Al_scaffold_0001_1280
Length=1344
Score = 1535 bits (831), Expect = 0.0
Identities = 908/946 (96%), Gaps = 1/946 (0%)
Strand=Plus/Plus
Query 577 AAG-AAAAACAGATTGATTCAGATGCCGTCTTTGATTGAGTACTTTGGTTACTGCCTTTG 635
||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 399 AAGAAAAAACCGATTGGTTCAGATGCCATCTTTGATTGAGTACTTTGGTTACTGCCTTTG 458
Query 636 TTGTGGTAGCCATTTTGCTGGTCCTGTTTATGAAATGAAAGATTATCTTGAATGGACCGA 695
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 459 TTGCGGTAGCCATTTTGCTGGTCCTGTTTATGAAATGAAAGATTATCTCCAATGGACCGA 518
Query 696 AGGGAAAGGGATTTGGGATACTACTGAGAAAAGAAAGAAGCCATCGCCTTATGGAGCTAC 755
||| |||||||||||||||||| | || ||||||||| |||||||||||| |||||||||
Sbjct 519 AGGAAAAGGGATTTGGGATACTTCAGAAAAAAGAAAGCAGCCATCGCCTTTTGGAGCTAC 578
Query 756 AATCCGAGCTATTTTGCAAGCTGCGATTTGCATGGCTCTGTATCTCTATTTAGTGCCTCA 815
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 AATCCGAGCTATTTTGCAAGCTGCGATCTGCATGGCTCTGTATCTCTATTTAGTGCCTCA 638
Query 816 ATATCCGTTAACTCGGTTCACAGAACCAGTGTATCAAGAATGGGGATTCTTGAGAAAATT 875
||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 639 GTATCCGTTAACCCGGTTCACTGAACCCGTGTACCAAGAATGGGGATTCTTGAGAAAATT 698
Query 876 TAGTTACCAATACATGGCTGGATTCACGGCTCGTTGGAAGTATTACTTCATCTGGTCAAT 935
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 699 TAGTTATCAATACATGGCCGGATTCACGGCCCGTTGGAAGTATTACTTCATCTGGTCAAT 758
Query 936 TTCAGAGGCTTCTATTATCATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATGATGCTTC 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TTCAGAGGCTTCTATTATCATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATGATGCTTC 818
Query 996 ACCAAAGCCCAAATGGGACCGTGCCAAGAACGTAGATATTCTCGGTGTTGAACTAGCTAA 1055
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 819 ACCAAAGCCTAAATGGGACCGTGCCAAGAACGTAGACATTCTCGGTGTTGAACTAGCTAA 878
Query 1056 GAGCGCGGTTCAGATTCCACTTGTGTGGAACATACAAGTCAGCACGTGGCTCCGTCACTA 1115
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 879 GAGCGCGGTTCAGATTCCACTAGTATGGAACATACAAGTCAGCACATGGCTCCGTCACTA 938
Query 1116 TGTGTATGAGAGACTTGTGCAGAACGGAAAGAAAGCGGGTTTCTTCCAGTTACTAGCTAC 1175
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 939 CGTGTATGAAAGACTTGTGCAGAACGGAAAGAAAGCGGGTTTCTTCCAGTTATTAGCTAC 998
Query 1176 ACAAACCGTCAGCGCGGTTTGGCATGGACTGTATCCTGGATATATGATGTTCTTTGTTCA 1235
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 999 ACAAACCGTCAGTGCGGTTTGGCATGGACTATATCCTGGATATATGATGTTCTTTGTTCA 1058
Query 1236 GTCAGCTTTGATGATCGCAGGCTCACGGGTTATTTACCGGTGGCAACAAGCGATCAGTCC 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GTCAGCTTTGATGATCGCAGGCTCACGGGTTATTTACCGGTGGCAACAAGCGATCAGTCC 1118
Query 1296 GAAAATGGCAATGCTGAGAAATATAATGGTCTTCATCAACTTCCTTTACACTGTTTTGGT 1355
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1119 GAAAATGGCAATGCTGAGAAATATACTGGTCTTCATCAACTTCCTTTACACCGTTTTGGT 1178
Query 1356 TCTCAACTACTCAGCCGTCGGTTTCATGGTGTTAAGCTTGCACGAAACACTTACCGCCTA 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TCTCAACTACTCAGCCGTCGGTTTCATGGTGTTAAGCTTGCACGAAACACTTACCGCCTA 1238
Query 1416 CGGAAGCGTATATTACATTGGAACAATCATACCTGTTGGATTGATTCTCCTCAGTTACGT 1475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1239 CGGAAGCGTATATTACATTGGAACAATCATACCTGTTGTATTGATTCTCCTCAGTTACGT 1298
Query 1476 TGTGCCTGCAAAACCTTCAAGACCAAAACCGCGTAAAGAAGAATAA 1521
||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1299 TGTTCCTGCAAAACCCTCAAGACCAAAACCGCGTAAGGAAGAATAA 1344
Score = 569 bits (308), Expect = 2e-161
Identities = 369/399 (92%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 148 ATGGCTGGTTCAATCGGAGTTTCGGTAGCCGTACTCCGATTCCTCCTCTGTTTCGTTGCC 207
||||||| ||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 1 ATGGCTGCTTCGATCGGAGTTTCGGTCGCCGTTCTCCGTTTCCTCCTCTGTTTCGTCGCC 60
Query 208 ACGATCCCTGTTTCATTCGCTTGTCGAATCGTCCCGAGTAGACTCGGTAAACACTTGTAT 267
||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 61 ACGATTCCTGTTTCTTTCGCCTGGAGAATCGTCCCGAGTCGACTCGGTAAACACTTGTAT 120
Query 268 GCCGCTGCTTCAGGTGCTT-TCCTCTCTTACCTCTCCTTTGGCTTCTCCTCCAACCTTCA 326
|||||||||||||||| || | ||||||||||| |||||||| |||||||||||||| ||
Sbjct 121 GCCGCTGCTTCAGGTG-TTCTACTCTCTTACCTTTCCTTTGGATTCTCCTCCAACCTCCA 179
Query 327 CTTCCTTGTTCCGATGACGATCGGATATGCTTCAATGGCGATTTATAGACCCAAGTGTGG 386
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 180 CTTCCTCGTTCCGATGACGATCGGTTATGCTTCAATGGCGATTTATCGACCCAAGTGTGG 239
Query 387 AATCATCACTTTCTTCCTCGGTTTCGCTTATCTTATTGGCTGTCATGTGTTTTATATGAG 446
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AATCATCACTTTCTTCCTCGGTTTCGCTTATCTCATTGGCTGTCATGTGTTTTATATGAG 299
Query 447 TGGTGATGCGTGGAAAGAAGGAGGAATCGATTCTACTGGAGCGTTAATGGTGTTGACGCT 506
||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 300 TGGAGATGCGTGGAAAGAAGGAGGAATTGATGCTACTGGAGCGTTAATGGTGTTAACGCT 359
Query 507 GAAAGTCATCTCATGTTCAATGAATTACAATGATGGGAT 545
|||||| ||||| ||| | ||||||||||||||||||||
Sbjct 360 GAAAGTTATCTCGTGTGCCATGAATTACAATGATGGGAT 398
> Ahg924677 jgi|Araly1|924677|scaffold_200238.1
Length=1438
Score = 1328 bits (719), Expect = 0.0
Identities = 1173/1391 (84%), Gaps = 36/1391 (3%)
Strand=Plus/Plus
Query 149 TGGCTGGTTCAATCGGAGTTTCGGTAGCCGTACTCCGATTCCTCCTCTGTTTCGTTGCCA 208
||||| ||||||| | || || || ||||| ||||| ||||||||||||||||| || |
Sbjct 46 TGGCTTCTTCAATCTGCGTCTCCGTCGCCGTTCTCCGTTTCCTCCTCTGTTTCGTCGCAA 105
Query 209 CGATCCCTGTTTCATTCGCT-TGTCGAATCGTCCCGAGTAGACTCGGTAAACACTTGTA- 266
|||| || | || ||| | || ||| ||||||||||| |||||||||||||| ||
Sbjct 106 CGATACCAATCTCGTTC-TTATGGCGATTCGTCCCGAGTCGACTCGGTAAACACACCTAC 164
Query 267 TGCCGCTGCTTCAGGTGCTTTCCTCTCTTACCTCTCCTTTGGCTTCTCCTCCAACCTTCA 326
| | |||||||| || |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 165 T-CAGCTGCTTCTGGAGCTTTCCTCTCTTATCTCTCCTTTGGCTTCTCCTCAAATCTTCA 223
Query 327 CTTCCTTGTTCCGATGACGATCGGATATGCTTCAATGGCGATTTATAGACCCAAGTGTGG 386
||||||||| || |||||||| || || |||||||||||||||||| ||||| || |||
Sbjct 224 CTTCCTTGTCCCAATGACGATTGGTTACGCTTCAATGGCGATTTATCGACCCTTGTCTGG 283
Query 387 AATCATCACTTTCTTCCTCGGTTTCGCTTATCTTATTGGCTGTCATGTGTTTTATATGAG 446
| | || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 284 ATTGATTACTTTCTTCCTGGGCTTCGCTTATCTCATTGGCTGTCATGTGTTTTATATGAG 343
Query 447 TGGTGATGCGTGGAAAGAAGGAGGAATCGATTCTACTGGAGCGTTAATGGTGTTGACGCT 506
||| ||||| ||||||||||||||||| || ||||||||||| || |||||||| || ||
Sbjct 344 TGGAGATGCTTGGAAAGAAGGAGGAATTGACTCTACTGGAGCTTTGATGGTGTTAACACT 403
Query 507 GAAAGTCATCTCATGTTCAATGAATTACAATGATGGGATGTTGAAGGAGGAAGGTCTACG 566
|||||| || || ||||| || |||||||| ||||| |||||||| || |||||||| ||
Sbjct 404 GAAAGTGATTTCGTGTTCGATAAATTACAACGATGGAATGTTGAAAGAAGAAGGTCTCCG 463
Query 567 TGAAGCTCAGAAGAAAAACAGATTGATTCAGATGCCGTCTTTGATTGAGTACTTTGGTTA 626
||| ||||||||||| ||| | |||||||||| ||| ||| | |||||||||||||||||
Sbjct 464 TGAGGCTCAGAAGAAGAACCGTTTGATTCAGAGGCCTTCTCTAATTGAGTACTTTGGTTA 523
Query 627 CTGCCTTTGTTGTGGTAGCCATTTTGCTGGTCCTGTTTAT-GAAATGAAAGATTATCTTG 685
|||||||||||||| |||||||| ||||| || |||| | |||||||||||||||||||
Sbjct 524 TTGCCTTTGTTGTGGAAGCCATTTCGCTGGCCCGGTTT-TCGAAATGAAAGATTATCTTG 582
Query 686 AATGGACCGAAGGGAAAGGGATTTGGGATACTACTGAGAAAA-GAAAGAAG-CCATCGCC 743
||||||| |||| |||||| ||||||||| | ||| |||| ||||| | ||||||||
Sbjct 583 AATGGACTGAAGAGAAAGGAATTTGGGATGTTTCTG-TAAAAGGAAAG-CGACCATCGCC 640
Query 744 TTATGGAGCTACAATCCGAGCTAT-TTTGCAAGCTGCGATTTGCATGGCTCTGTATCTCT 802
||||||||| || || |||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 641 TTATGGAGCAACGATTCGAGCTATATTT-CAAGCTGCGATTTGTATGGCTCTGTATCTCT 699
Query 803 ATTTAGTGCCTCAATATCCGTTAACTCGGTTCACAGAACCAGTGTATCAAGAATGGGGAT 862
||||||| ||||| | ||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 700 ATTTAGTACCTCAGTTTCCGTTAACCCGGTTCACTGAACCAGTCTACCAAGAATGGGGAT 759
Query 863 TCTTGAGAA-A-ATTTAGTTACCAATACATGGCTGGATTCACGGCTCGTTGGAAGTATTA 920
|| || ||| | |||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 760 TC-TG-GAAGAGATTTGGTTACCAATACATGGCGGGTTTCACGGCTCGTTGGAAGTATTA 817
Query 921 CTTCATCTGGTCAATTTCAGAGGCTTCTATTATCATCTCTGGTTTGGGTTTCAGTGGTTG 980
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 818 CTTCATATGGTCTATTTCAGAGGCTTCTATTATTATCTCTGGTTTGGGTTTCAGTGGTTG 877
Query 981 GACTGATGATGCTTCAC-CAAAGCCCAAATGGGACCGTGCCAAGAACGTAGATATTCTCG 1039
||||||||| || || ||||| | |||||||||||||| || || || |||||| | |
Sbjct 878 GACTGATGAAACT-CAAACAAAGGCGAAATGGGACCGTGCGAAAAATGTCGATATTTTGG 936
Query 1040 GTGTTGAACTAGCTAAGAGCGCGGTTCAGATTCCACTTGTGTGGAACATACAAGTCAGCA 1099
| ||||| || || ||||| |||||||||||||| ||| | |||||||||||||||||||
Sbjct 937 GGGTTGAGCTTGCCAAGAGTGCGGTTCAGATTCCGCTTTTCTGGAACATACAAGTCAGCA 996
Query 1100 CGTGGCTCCGTCACTATGTGTATGAGAGACTTGTGCAGAACGGAAAGAAAGCGGGTTTCT 1159
| |||||||||||||| || ||||||||| ||||| || ||| |||||||| |||||||
Sbjct 997 CATGGCTCCGTCACTACGTATATGAGAGAATTGTGAAGCCCGGGAAGAAAGCAGGTTTCT 1056
Query 1160 TCCAGTTACTAGCTACACAAACCGTCAGCGCGGTTTGGCATGGACTGTATCCTGGATATA 1219
|||| || |||||||| ||||||||||| || || ||||||||||||||||||||||| |
Sbjct 1057 TCCAATTGCTAGCTACGCAAACCGTCAGTGCTGTCTGGCATGGACTGTATCCTGGATACA 1116
Query 1220 TGATGTTCTTTGTTCAGTCAGCTTTGATGATCGCA-GGCTC-ACGGGTTATTTACCGGTG 1277
| || |||||||| || ||||| |||||||||| | || || | | | |||||||| ||
Sbjct 1117 TTATATTCTTTGTGCAATCAGCATTGATGATCG-ATGGTTCGAAAGCT-ATTTACCGATG 1174
Query 1278 GCAACAAGCGATCAGTCCGAAAATGGCAATGCTGAGAAATATAATGGT-CTTCATCAACT 1336
||||||||| ||| ||||||||||||||||||||||||| | |||| || |||||| |
Sbjct 1175 GCAACAAGCAATCCCTCCGAAAATGGCAATGCTGAGAAATGTTTTGGTTCT-CATCAATT 1233
Query 1337 TCCTTTACACTGTTTTGGTTCTCAACTACTCAGCCGTCGGTTTCATGGTGTTAAGCTTGC 1396
|||| ||||| || ||||||||||| |||||| |||| ||||||||||| ||||||||||
Sbjct 1234 TCCTCTACACAGTATTGGTTCTCAATTACTCATCCGTTGGTTTCATGGTTTTAAGCTTGC 1293
Query 1397 ACGAAACACTTACCGCCTACG-GAAGCGTATATTACATTGGAACAATCATACCTGTTGGA 1455
| |||||| | ||||| | || | |||||||||||||||||| | |||||| | |
Sbjct 1294 ATGAAACAATCGTCGCCTTCAAGA-GTGTATATTACATTGGAACAGTTATACCTATCGC- 1351
Query 1456 T-TGATTCTCCTCAGTTACGTT-GTGCCTGCAAAACCT-TCAAGACCAAA-ACCGCGTAA 1511
| || |||| ||||| ||| || || |||| || ||| | | ||||||| || | | ||
Sbjct 1352 TGTGCTTCTTCTCAGCTAC-TTAGTTCCTGTGAAGCCTGTTA-GACCAAAGAC-GAG-AA 1407
Query 1512 AGAA-GAATAA 1521
|| | ||||||
Sbjct 1408 AGGACGAATAA 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5