BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12650.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471412 jgi|Araly1|471412|fgenesh2_kg.1__1366__AT1G12650.3 1580 0.0
> Ahg471412 jgi|Araly1|471412|fgenesh2_kg.1__1366__AT1G12650.3
Length=1082
Score = 1580 bits (855), Expect = 0.0
Identities = 981/1039 (94%), Gaps = 19/1039 (2%)
Strand=Plus/Plus
Query 92 TGTGATCTTTATTGATTAGGTTCACGTGTCGACATGAAAGGAGCTGGTAAGTTTGAAGGG 151
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 56 TGTGCTCTTTATTGATTAGGTTCACGTGTCGACATGAAGGGAGCTGGTAAGTTTGAAGGG 115
Query 152 AGCTCAAGTAAGATAGTTTTTGAGGATAGTGAAGAAGATGAAGATCTCTCGTGTTCATCT 211
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 116 AGCTCGAGTAAGATAGTTTTTGAGGATAGTGAAGAAGATGAAGATCTGTCGTATTCATCT 175
Query 212 GTGTCTTCTTCAGATGAGGAAGAAGAAACAGAAAAAGAGTTAACCTTTGAGGAGATTCAT 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 176 GTGTCTTCTTCAGATGAGGAAGAAGAAACAGAAAAAGAGTTAACCTTTGAGGAGATACAT 235
Query 272 AAATTACGAGCTGATGGGTCTAAAGCTGTTCCATGGAAACCAAATCAAGTGAAGAAAACA 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 236 AAATTACGAGCTGATGGGTCTAAAGCTGTTCCATGGAAACCAAATCAAGTGAAGAAGACA 295
Query 332 GGTCGTGCTCGTGCTAACAAAAACAGACCAATGGAAG-TGAGTTCTAAGAAACCTGTGAG 390
| | |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 296 ----G-G-TCGTGCTAACAAAAACAGACCAATGG-AGTTGAGTTCTAAGAAACCTGTGAG 348
Query 391 TCGTTATAGAGAGGTGGTTCACGTTCCAAAGAAGGAGGTTCGTGATCCTCGCTTTAACCA 450
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 349 TCGTTATAGAGAGGTAGTTCAAGTTCCAAAGAAGGAGGTTCGTGATCCTCGCTTCAATCA 408
Query 451 ATTGGGTGGAACACTTGACGTCGAGGGGTTCAGGAAGCGATATAATTTCTTTTTTGAGGA 510
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 409 ATTGGGTGGAACACTTGACGTCGAGGGGTTCAGGAAGCGATACAATTTCTTTTTTGAAGA 468
Query 511 CAAACTTCCTGTGgaaagagaggaattgaaaaagaagttaaagaaaacaaagaatccaga 570
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 469 CAAACTTCCTGTGGAAAGAGAGGAATTGAAAAAGAAGCTAAAGAAAACAAAGAATCCAGA 528
Query 571 agaaatcgacgaattgaagaaCCAGTTAACTTACGTTGAGAAAATGTTGAAGTATGAGCC 630
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 529 AGAGGTCAACGAATTGAAGAACCAGTTAACTTACGTTGAGAAAATGTTGAAATATGAGCC 588
Query 631 ATCAACACAGAACAAAGGAGCAGCAATACTAACAGAACACaaaaagaaagaacgagaagc 690
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATCAACAAAGAACAAAGGAGCAGCAATACTAACAGAACACAAAAAGAAAGAACGAGAAGC 648
Query 691 cgcaaaagaaggaaaaaggccttactatctcaaaaaatcggaaaTCCGAAAGCAAACACT 750
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 649 CGCAAAAGAAGGGAAAAGGCCTTACTATCTAAAAAAATCGGAAATCCGAAAGCAAACACT 708
Query 751 CATCGAAAAGTACAACAGTCTCAAGGAATCTGGGAAGCTTACATCGTATCTTGACAAACG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CATCGAAAAGTACAACAGTCTCAAGGAATCTGGGAAGCTTACATCGTATCTTGACAAACG 768
Query 811 GAGGAAGAAGAATGCAACAAAGGATCATAGGTTCATGCCCTATCGTCGAGCAGAGGAATA 870
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 769 GAGGAAGAAGAATGCGACAAAGGATCATAGGTTTATGCCCTATCGTCGAGCAGAGGAATA 828
Query 871 GAGATAAGCAGTTTTGCTTTAAGACCTGT-CTCTTACCTTGGTCCATGACAAATTTTGTG 929
| || ||||||||||||||||||| | | ||||||||||||||||||||| |||||||
Sbjct 829 GTGAGAAGCAGTTTTGCTTTAAGAAC-GAACTCTTACCTTGGTCCATGACAGTTTTTGTG 887
Query 930 GCGGTCTTTGTGAT--ACTGATCTAAAATTCATGTTTGAGGTTTGAAAGCCAAATGCAGC 987
|| ||||||||||| | | | |||||||| ||| ||||| ||||||||||||||||||
Sbjct 888 GCAGTCTTTGTGATGTAGT-A-CTAAAATTTATGCTTGAGAATTGAAAGCCAAATGCAGC 945
Query 988 TTTACATTTT--GTTTTTGCAATTGAAAGCCAAATCGAATACAAAGGCTGCTTAGTTTGC 1045
| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TAAACTTTTTTTGTTTTT-CAATTGAAAGCCAAATCGAATACAAAGGCTGCTTAGTTTGC 1004
Query 1046 TGTTGGTTCTGTGAAGACATGAGAGACTCTAGACCTTTCAGAGGGTTCAAATCTACAT-T 1104
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1005 TGTTGTTTCTGTGAAGACATGAGAGACTCTAGACCTTTCAGAGGGTTCAAATCTAC-TGT 1063
Query 1105 ACTTTTCTTATGTTACTTA 1123
|||||||||||||||||||
Sbjct 1064 ACTTTTCTTATGTTACTTA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5