BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12660.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911036 jgi|Araly1|911036|Al_scaffold_0001_1290                    435    2e-121


> Ahg911036 jgi|Araly1|911036|Al_scaffold_0001_1290
Length=372

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 285/308 (93%), Gaps = 8/308 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGGACAAAAGAGTGGCCATGTTAGTGGTGATGATGTTGGTGATGGGGAACATGTTA  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  
Sbjct  1    ATGGAGAACAAAAGAGTGGCCATGTTAGTGGTGATGATGTTGGTGATGGGGAACACGTCG  60

Query  61   ATTGAGGCAGAGG--CT---G-TTATGTCTTTTAAATTATGTTACGGAGGTTGTCTTGTG  114
            |||||||||| ||  ||   |   |||||||||||| |||||||||||||||||||||||
Sbjct  61   ATTGAGGCAGTGGCTCTGCCGAAAATGTCTTTTAAAGTATGTTACGGAGGTTGTCTTGTG  120

Query  115  GCGTGTGCTCTAATAGCGCCTCCGATTAAAAAACttttttgtccttttttGTGTATCAAG  174
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  121  GCGTGTGCTCTAATAGCGCCTGCGATTAAAAAACCTTTTTGTCCTTTTTTGTGTATCAAG  180

Query  175  GATTGTAAACGTCGACCTATGCTTTCTTTTGAGGCAAATC-TAAATGAAATTGACCAAAC  233
            |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||
Sbjct  181  GATTGTAAACGTCGACCTATACTTTCTTTTGAGGCAAATCTTAAA-GAAATTGACCAGAC  239

Query  234  TGGTTCTTACTGCGAACTCGGATGTGCTACCGATCGTTGTGTTTCATCCTCCTCAATTGA  293
            || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGATTCTTTCTGCGAAGTCGGATGTGCTACCGATCGTTGTGTTTCATCCTCCTCAATTGA  299

Query  294  TGATAAGG  301
            ||||||||
Sbjct  300  TGATAAGG  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5