BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12663.1

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911037 jgi|Araly1|911037|Al_scaffold_0001_1291                    490    3e-138


> Ahg911037 jgi|Araly1|911037|Al_scaffold_0001_1291
Length=357

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 319/344 (93%), Gaps = 7/344 (2%)
 Strand=Plus/Plus

Query  1    ATGTTGGTGGCAGTAATGATAGTGATGGTGATAGGGAACCTTCTGGCTC--A-GACAGCG  57
            ||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||| |
Sbjct  1    ATGTTGGTGGCAGTAATGATAGTGATGGTGATAGGGAACCTCCTGGCTCAGACGACAGAG  60

Query  58   GCTCAAAAAATCCCATTTAAAGAATGTTATCCAGCTTGTCTTGTGGAGTGTAAAGCTG-G  116
            ||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
Sbjct  61   GCTCAGAAAATCCCATTTAAAGATTGTTATCCAGCTTGTCTTATAGAGTGTAAAGCTGAG  120

Query  117  TTCAAAGTTTCCAAAGTATCTTAAGTGTCCATTTACGTGTACCAAAGA-ATGTCTTCAAC  175
             ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  121  -TCAAATTTTCCAAAGTATCTTAAGTGTCCATTTACGTGTACCAAA-ACATGTCTTCAAC  178

Query  176  AACCTTCTCCACCATCTGTTTCTTCAAACAATATCGATGAATCTGATTATTTCTGCAAAC  235
            ||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  179  AACCTCCTCTACCATCTGTTTCTTCAGACAATATCGATGATTCTGATTATTTCTGCAAAC  238

Query  236  TCGGATGTGCAACTTATCATTGTGTTTCTCTTTCTTCCATCCAAAATCCGAATGTGGAAA  295
            |||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||
Sbjct  239  TCGGATGTGCAACTTATCATTGTGTTTCTCTTTCTTCCCTTCAAAACCCGAATATGGAAA  298

Query  296  GAGTATCAGCATGTGTGGATTCATGCTCAAACAAGTGTACCAAG  339
            | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct  299  GCGTATCAGCCTGTGTCGATTCATGCTCAAACAAGTGTACCAAG  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12362410836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5