BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12665.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920114 jgi|Araly1|920114|scaffold_101395.1 348 3e-95
> Ahg920114 jgi|Araly1|920114|scaffold_101395.1
Length=310
Score = 348 bits (188), Expect = 3e-95
Identities = 236/259 (91%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 50 TTCTCCCTaaaaaaaaGAATGGAGGGTAAAAGCCTAGTTGCGATTTTGGTGACAATGATG 109
|||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 4 TTCT-CCTTGAAAAAAGAATGGAGGGTAAAAGCCTAGTTGCGGTTTTGGTGACAATGATG 62
Query 110 GTGATAGGAAACCTTCTTCCTCAAACAGAGGCTCAAAAGATACCTTTTATGCAATGTTTT 169
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 63 GTGATGGGAAACCTTCTTCCTCAAACAGAGGCTCAAAAGATACCATTTATGCAATGTTAT 122
Query 170 CCAGCTTGTAT-GATAGTGTGTAAGAGTGAGTCAAAGTTTCCAAAGTTTCTTACTTGTCC 228
||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 123 CCAGCTTGTATTG-TAGTGTGTAAGAGTGAGTCAACGTTTCCAAAGTTTCTTAAATGTCC 181
Query 229 AATAACATGTCTCAAAACATGtcttcatcctccgtctccgcctccttccccgcccccgtc 288
| |||||||||| |||||||||||||||||||||||| |||||||| || | |||||
Sbjct 182 TTTTACATGTCTCAGAACATGTCTTCATCCTCCGTCTCCTCCTCCTTCTCCTTCTCCGTC 241
Query 289 tccttctccttctccttct 307
||||| ||||||||||||
Sbjct 242 CCCTTCGCCTTCTCCTTCT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5