BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12669.1

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911039 jgi|Araly1|911039|Al_scaffold_0001_1293                    342    9e-94


> Ahg911039 jgi|Araly1|911039|Al_scaffold_0001_1293
Length=300

 Score =  342 bits (185),  Expect = 9e-94
 Identities = 216/231 (94%), Gaps = 2/231 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCAAAAGAGTCGCGATGTTGATGAATCTTATGATAGTGATGGTAATGGGATGT  60
            |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| 
Sbjct  1    ATGGAGAGCAAAAGAGTCGCTATGTTGATGAATATTATGATAGTGATGGTAATAGGATGC  60

Query  61   CTTCTGGTTCAGACAGAGGCTAAGTCTAGCCATTTCAAACTTTGTTACTCAGACTGTCAT  120
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct  61   CTTCTGGTTCAGACAGAGGCTAAGTCTAGCGATTTCAAAGTTTGTTACTCAGATTGTCAT  120

Query  121  GCC--GTGTAAATCTCATACGACATTTCCAAAGTCTCTTTTGTGTCCATTCACATGTCTC  178
            |||  |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct  121  GCCGTGTGTAAATCTCATACGACGTTTCCAAAGTCTCTCTTGTGTCCCTTCACATGTCTC  180

Query  179  ATGACTTGTCTTGTTCCTACTCTACCAACTCCTTCTCCTGCTTCTGATACG  229
            ||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct  181  ATGACTTGTCTTGTTCCTAATCAACCAACTCCTTCTCCTACTTCTGATACG  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14003101163


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5