BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12669.1 Length=391 Score E Sequences producing significant alignments: (Bits) Value Ahg911039 jgi|Araly1|911039|Al_scaffold_0001_1293 342 9e-94 > Ahg911039 jgi|Araly1|911039|Al_scaffold_0001_1293 Length=300 Score = 342 bits (185), Expect = 9e-94 Identities = 216/231 (94%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1 ATGGAGAGCAAAAGAGTCGCGATGTTGATGAATCTTATGATAGTGATGGTAATGGGATGT 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| Sbjct 1 ATGGAGAGCAAAAGAGTCGCTATGTTGATGAATATTATGATAGTGATGGTAATAGGATGC 60 Query 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCCATTTCAAACTTTGTTACTCAGACTGTCAT 120 |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| Sbjct 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCGATTTCAAAGTTTGTTACTCAGATTGTCAT 120 Query 121 GCC--GTGTAAATCTCATACGACATTTCCAAAGTCTCTTTTGTGTCCATTCACATGTCTC 178 ||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 121 GCCGTGTGTAAATCTCATACGACGTTTCCAAAGTCTCTCTTGTGTCCCTTCACATGTCTC 180 Query 179 ATGACTTGTCTTGTTCCTACTCTACCAACTCCTTCTCCTGCTTCTGATACG 229 ||||||||||||||||||| || |||||||||||||||| ||||||||||| Sbjct 181 ATGACTTGTCTTGTTCCTAATCAACCAACTCCTTCTCCTACTTCTGATACG 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14003101163 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5