BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12672.2

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471418 jgi|Araly1|471418|fgenesh2_kg.1__1372__AT1G12672.1         300    9e-81


> Ahg471418 jgi|Araly1|471418|fgenesh2_kg.1__1372__AT1G12672.1
Length=502

 Score =  300 bits (162),  Expect = 9e-81
 Identities = 187/198 (94%), Gaps = 6/198 (3%)
 Strand=Plus/Plus

Query  187  TGTATCAAGACTTGTCTTGAACCTCCTTCTTCACAGATGGATTCCACAAACGAAATCAAT  246
            |||||||||||||||||||||||| |  |||||||||||||||  |||||||||||||||
Sbjct  308  TGTATCAAGACTTGTCTTGAACCT-C--CTTCACAGATGGATTTAACAAACGAAATCAAT  364

Query  247  CATAATGATTATTACTGCAAACTAGGTTGTTCTACTCATCACTGCGCTTCCCTTTCCTCT  306
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  365  CATAATGAGTATTACTGCAAACTAGGTTGTTCTACTCATCACTGTGCTTCCCTTTCCTCT  424

Query  307  ATCCAAAATCCG--A-ATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG  363
            ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  ATCCAAAATCCGACAGATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG  484

Query  364  TGCTCGAACAAGAACTAG  381
            ||||| ||||||||||||
Sbjct  485  TGCTCCAACAAGAACTAG  502


 Score =  174 bits (94),  Expect = 6e-43
 Identities = 108/115 (94%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  67   ATGGAGAGCAACAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC  126
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAGCAAAAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC  60

Query  127  CTTCTGATTGAAACAGAAGCTGATGCTCCACCTCAACCTTCTCCTTTTAAAACTT  181
            ||||||||| | ||||||||| | |||| | ||||||||||||||||||||||||
Sbjct  61   CTTCTGATTCAGACAGAAGCTCAAGCTCAAGCTCAACCTTCTCCTTTTAAAACTT  115



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5