BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12680.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471419 jgi|Araly1|471419|fgenesh2_kg.1__1373__AT1G12680.1 3142 0.0
> Ahg471419 jgi|Araly1|471419|fgenesh2_kg.1__1373__AT1G12680.1
Length=1929
Score = 3142 bits (1701), Expect = 0.0
Identities = 1859/1934 (96%), Gaps = 16/1934 (1%)
Strand=Plus/Plus
Query 10 TCTATCTGCATGATTTGGGCTTAGCTTTTTCGTCCCCAAATATTGCGCTTCATCGAGATT 69
|||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||
Sbjct 1 TCTATCTGCATGATTTGGGCGTAGCTTTTTCTTCCCCAAATA-T-CGCTTCATCGAGATT 58
Query 70 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCTCATCAACATCTATTGATTCAATTTTCGT 129
||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||
Sbjct 59 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCGCATCAACATCTATTGGTTCGA-TTTCGT 117
Query 130 GCTATTGTTTCCCTCTCTGATTTCTTAATCGGAAATTTCGTCTCGATTCGATTCATTAGG 189
||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 118 GCTGTTATTTCCCTCTCTGATTTATTGATCGGAAATTTCGTCTCGATTCGATTCATTAGG 177
Query 190 TTCCATCACTCTTTTCTGATCGGTGAAAGGAGGAGAAGA-CCTGTTGTTTTCTTATGTAA 248
||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 178 TTCCATCACTCTTCTCTGATCGGTGAAAGGAGGAGAAGATCC-GTTATTTTCTTATGTAA 236
Query 249 GTGATTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGAGTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 296
Query 309 AAACTGAGGGTTGGGAGAATTTACCAGATGATTTATCATGTTCAACTGCATCACGATCAT 368
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 297 AAACTGAGGGTTGGGAGAATTTACCAGAGGATTTATTATGTTCAACTGCATCACGATCAT 356
Query 369 CCAACTTCAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAACGGTGTAAGG 428
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 357 CCAACTTTAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAGCGGTGTAAGG 416
Query 429 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 476
Query 489 CACCTCCTTGTGGTGCATCATCTTTGGTTTCGTCAGGAAGAGGTTTGAAGAGGAAGATAG 548
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 CACCTCCTTGTGGTGCATCATCTTTGGTTTCATCAGGAAGAGGTTTGAAGAGGAAGATAG 536
Query 549 GGTGCATAGATGTTTCCACACAGACTGGTAGGAAGAATAAAATAGACGATGACTATGTTT 608
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 537 GGTGCATAGATGTTTCCACGCAGACTGGTAGGAAGAATAAGATAGGCGATGACTATGTTT 596
Query 609 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 656
Query 669 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 716
Query 729 TTGAGATAATGCAACATTTGTCTGGTCATCCTCGGGTTGTCACATTGCATGCTGTGTATG 788
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 717 TTGAGATAATGCAACATTTATCTGGTCATCCTCGGGTTGTCACGTTGCATGCTGTATATG 776
Query 789 AAGAGTCAGACTGTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 848
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGAGTCAGACTCTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 836
Query 849 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAACGAGCAGCTAATATATTCAAGGACCTTA 908
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 837 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAGCGAGCAGCTAATATATTCAAGGACCTCA 896
Query 909 TGCTAGTGATCAATTATTGCCATGAGATGGGAGTTGTGCATAGAGATATAAAACCTGAGA 968
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 897 TGCTAGTCATCAATTATTGCCACGAGATGGGAGTTGTGCACAGAGACATAAAACCAGAGA 956
Query 969 ATATTCTCCTAACAGCTGCTGGGAAGATACAGCTGGCTGATTTTGGCCTCGCCATGAGAA 1028
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 957 ATATTCTACTAACAGCTGCTGGGAAGATACAGCTAGCTGATTTTGGCCTCGCCATGAGAA 1016
Query 1029 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1076
Query 1089 TTCTTTCCGAAAATTATTCAGAGAAGGTTGACGTTTGGAGTGCAGGTGTCCTCTTATACG 1148
||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
Sbjct 1077 TTCTTTCTGAAAATTATTCAGAGAAGGTCGACATTTGGAGTGCAGGTGTCCTATTATATG 1136
Query 1149 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGATGCTATTTTCGAAGCAA 1208
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1137 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGACGCTATTTTCGAAGCAA 1196
Query 1209 TCAAAAACGTGAAGCTTGATTTCAACACGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 TCAAAAACGTGAAGCTTGATTTCAACTCGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1256
Query 1269 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1316
Query 1329 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1376
Query 1389 AGTCGAAGCACAAGAGTCAAGCAGGATCTTCTAC-GTGTCTCCAGAATCGCAGTCCCACA 1447
|||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||
Sbjct 1377 AGTCGAAGCACAAGAGTCAAGCAGCATCT-CTTCCGTGCCTCCAGAATCGCAGTCCCACA 1435
Query 1448 GAGAAAACTGACCTAAACAGAGCTGACAGGGAAAAGAAGATACCATCTGATTCACCGACT 1507
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1436 GAGAAAACTGACCTAAACAGAGCTAACAGAGAAAAGAAGATACCATCTGATTCACCGACT 1495
Query 1508 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1555
Query 1568 GTTGCAATCGCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1627
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTTGCAATCTCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1615
Query 1628 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAGTACACTCTGTCGA 1687
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1616 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAATACACTCTGTCGA 1675
Query 1688 GCTTTCTGACAAAACCA--C-A-A-ACGCAGATGGGCATTGTCCAAGCGACAAGCTATGG 1742
|| |||||||||||||| | | | ||||| ||||||||||||||||| |||||||| ||
Sbjct 1676 GCGTTCTGACAAAACCAGACCACACACGCACATGGGCATTGTCCAAGCCACAAGCTACGG 1735
Query 1743 TTTCTCCACGATCTTAGTGACCTTTCTGTTATAATAGTTGG-T--GATATGATTCTGTGT 1799
||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||| |
Sbjct 1736 TTTCTCCACGATCTTAGTGACTTTTCTGTCATAATAGTTGGATTTGATATGATTCTGGGC 1795
Query 1800 TTTTTCCTCTTCTATATCTCTTACTTTGACCATGTACAGATCATGTAAATAGAATATGCT 1859
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1796 TTTTTCCTCTTCTACATCTCTGACTATGACCATGTACAGATCATGTAAATAGAATATGCT 1855
Query 1860 AAACAAATGATTGATCCGATTT-GGATCGGAGTTATAAGGTGTTGTTTCTAGTCCCTTCA 1918
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1856 AAACAAATGATTGATCCGATTTTGGATCGGAGTTATAAGGTGTTGTTTCTAGCCCCTTCA 1915
Query 1919 TAAAATTTTGGAAG 1932
||||||||||||||
Sbjct 1916 TAAAATTTTGGAAG 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5