BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12710.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471422 jgi|Araly1|471422|fgenesh2_kg.1__1376__AT1G12710.1 1530 0.0
> Ahg471422 jgi|Araly1|471422|fgenesh2_kg.1__1376__AT1G12710.1
Length=1013
Score = 1530 bits (828), Expect = 0.0
Identities = 899/934 (96%), Gaps = 1/934 (0%)
Strand=Plus/Plus
Query 147 TTAAGGTTTAGATGGGTGTGGCTCACTCTGATCTTCACAATGATTTGTCTTCTTCATCTT 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAAGGTTTAGATGGGTGTGGCTCACTCTGATCTTCACAATGATTTGTCTTCTTCATCTT 119
Query 207 GTTTTGGGGATCGGAATATCTTGAAGCCTGGTTTAGGAGATTTACCAGAGGCGTGTGTGG 266
||||||||||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 120 GTTTTGGGGATCGGAATCTGTTGAAGCTTGGGTTAGGGGATTTACCAGAGGCGTGTGTGG 179
Query 267 CTATAATTGTTGAGAATTTGGATCCTGTTGAGATCTGTAGATTCTCAAAGCTCAATAGAG 326
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTATGATTGTTGAGAATTTGGATCCTGTTGAGATCTGTAGATTCTCAAAGCTCAATAGAG 239
Query 327 CATTTCGCGGCGCTTCTTGGGCTGATTGTGTTTGGGAATCGAAACTTCCTCAGAATTACA 386
||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 240 CATTTCGCGGCGCTTCTTGGGCTGATTGTGTGTGGGAATCGAAGCTTCCTCCGAATTACA 299
Query 387 GAGATGTTCTCGAGAAAATCCTTGGTGGCTTCCCTGAAAATTTGCAAAAAAGACACCTTT 446
||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 300 GAGTTGTTCTCGAGAAAATCCTTGGTGGGTTCCCTGAAAATTTGCAAAAAAGAGACCTTT 359
Query 447 ATGCTTTTCTCTCCAGGATTAACTCATTCGATGATGCCACCAAGAAGGTATGGATAGATA 506
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 360 ATGCTTGTCTCTGCAGGATTAACTCATTCGATGATGGCACCAAGAAGGTATGGATTGATA 419
Query 507 AACGAACCAGTGGTGTTTGTCTATCCATTTCAGCCAAAGGATTATCCATTACAGGCATTG 566
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 420 AACGAAGCAGTGGTGTTTGTCTATCCATTTCAGCTAAAGGATTATCCATCACAGGCATTG 479
Query 567 ATGATCGTAGATATTGGAGTCATATCCCCACTGATGAATCTCGGTTTTCTTCTGTAGCTT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGATCGTAGATATTGGAGTCATATCCCCACTGATGAATCTCGGTTTTCTTCTGTAGCTT 539
Query 627 ATCTCCAACAAATCTGGTGGTTTGAAGTTGATGGTGAAATCGATTTCCCATTCCCGGTTG 686
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ATCTCCAACAAATTTGGTGGTTTGAAGTTGATGGTGAAATCGATTTCCCATTTCCGGTTG 599
Query 687 GAACCTACAGCATTTTCTTCAGGCTTCAATTAGGCCGGTCGGGCAAGTGGTTTGGTCGAC 746
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 600 GAACCTACAGCATTTTCTTCAGGCTTCAATTAGGCCGGCCTGGCAAGTGGTTTGGTCGAC 659
Query 747 GGGTCTGTAACACAGAACAAGTCCATGGTTGGGACATTAAACCGGTTCGATTTCAACTCT 806
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGTCTGTAACACCGAACAAGTCCATGGTTGGGACATTAAACCGGTTCGATTTCAACTCT 719
Query 807 GGACTGAAGATGGTCAATATTCCTCATCTCAATGTATGTTAACTGAGCGGGGAAACTGGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGACTGAAGATGGTCAATATTCCTCATCTCAATGTATGTTAACTGAGCGGGGAAACTGGA 779
Query 867 TTCATTACCACGCCGGAGACGTTGTTGTCCGGGAATCGAATAGGTCATCGACAAAGATTA 926
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 780 TTCATTACCACGCGGGAGACTTTATTGTCCGGGAATCGAATAGGTCATCGACAAAGATAA 839
Query 927 AGTTTTCGATGACTCAGATCGATTGTACACATACCAAAGGCGGGTTATCTCTAGACTCTG 986
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 840 AATTTTCGATGACTCAGATCGACTGTACCCATACCAAAGGCGGGTTATCTCTAGACTCTG 899
Query 987 TAGTCGTGTACCCGAGCTCGTGTAAAGACCAGTTGAAGCGGTTTTAATGTTTCAACCGGA 1046
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 900 TAGTCGTGTACCCGAGCTCGTGTAAAGGCCAGTTGAAGCGGTTTTAATGTTTCAATCGGA 959
Query 1047 TCCGGTTTAGTGAGAGGTTAAAGCAGGGTTTTTT 1080
||||||||||||||||||||||| ||| ||||||
Sbjct 960 TCCGGTTTAGTGAGAGGTTAAAGGAGG-TTTTTT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5