BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12730.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471424 jgi|Araly1|471424|fgenesh2_kg.1__1378__AT1G12730.1 2257 0.0
Ahg475037 jgi|Araly1|475037|fgenesh2_kg.2__167__AT1G63110.1 1153 0.0
> Ahg471424 jgi|Araly1|471424|fgenesh2_kg.1__1378__AT1G12730.1
Length=1681
Score = 2257 bits (1222), Expect = 0.0
Identities = 1538/1685 (91%), Gaps = 43/1685 (3%)
Strand=Plus/Plus
Query 63 gaaggaggagaagaaagaCGACGGAGTAATGGCTGAGGAGAAGCCTTACATGTTCTGGAT 122
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 3 GAAGGAAGAGAAGAAAGACGACGGAGTAATGGCAGAGGAGGAGCCTTACATGTTCTGGAT 62
Query 123 TTGGACTTTGGCTTCTACGATTTTCCGATTATTCCTGATC---TTTTCCCCGGCAAATAT 179
|||| || ||||||||||||||||||||||||| ||||| |||| ||||| ||||||
Sbjct 63 TTGGGCTATGGCTTCTACGATTTTCCGATTATTATTGATCTTTTTTTTCCCGGAAAATAT 122
Query 180 CAAC-CTATCTTCCCGTCCGGAGGTCTCCACCCCTCACACCAGCCTTCGCCGCCTTGCTG 238
|||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 123 CAACGC-ATCTTCCCGTCCGGAGCTCTCCACCCCTCTCACCAGCCTTCGCCGCCTTGCTG 181
Query 239 AAGGTTACTGGTTGAAGCAGTCATCACTGTCGCCATACGCAGGATCAATGTATCATGGCT 298
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 182 AAGGTTACTGGTTGAAGCAGGCATCACTGTCGCCATACGCAGGGTCAATGTATCATGGCT 241
Query 299 CTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAGTTCAGAGGATCGAAGGGCAATCGA 358
||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 242 CTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAATTCAGAGGATTGAAGGGCATTCGA 301
Query 359 GTCATCATTTGTGCAGTTTGGTTTTTGTTATTGCAGATTTACTTAGTGCACTGCTTCTTC 418
|||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 302 GTCATCATTTGTGCAGCTTGGTTTTTGTTATTGCAGATATACTTAGTGCGTTGCTTCTTC 361
Query 419 GAGCTATTGGTCAGAAGCTCCAGAAGTCTTATAGAATGAATTTGAGGCCACTTGGTGTTC 478
|||||| ||||||||||||||| ||| |||| ||| |||||||||||| |||||| |||
Sbjct 362 GAGCTACTGGTCAGAAGCTCCAAAAGGCTTACAGATTGAATTTGAGGCGACTTGGCCTTC 421
Query 479 TTAGGTCATCGCAGGATAGAGGGATCCTTCCTTGTGGAGATATTGCTGCTCTTGTGTATC 538
||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |
Sbjct 422 TTACGTCATTACAGGATAGAGGTATCCTCCCTTGTGGAGATATTGCTGCTCTTGTGCACC 481
Query 539 TGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCTACTTCTCCAATAGAAAATT 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 482 TGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCAACTTCTCCAATAGAAAATT 541
Query 599 TGGCTG----TC-A---TT-------GTG-TC---TCTTTA-TGGA-G--CA-GTTAC-- 632
|||||| || | || ||| || ||| || |||| | | | |
Sbjct 542 TGGCTGTCATTCAATTGTTGGAAAAAGTGTTCTTATCTATATTGGATGAAAACCCTGCTT 601
Query 633 TC-GACGAGTTCCTCTGGCTGCATTTGGGTTAATCATGGCCACACATTTGTCTCTTTATT 691
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 602 TCGGACGAGTTCCTCTGGCTGCATTTGGGTTAGTCATGGCCACACACTTGTCTCTTTATT 661
Query 692 CAGCACCTTTAGTGTTTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTA 751
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CAGCAACTTTAGCGATTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTG 721
Query 752 TAAAAAAGTTCCTTCAGACAAGACATGGAGGGGTTGAGACT---GGATCAACCTCTGATG 808
||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 722 TAAAAAAATTCCTTCAGACAAGACATGTTGGAGTTGAGACGACAGGATCAACCTCTGATG 781
Query 809 TTTCTAAACAAGAAAAGTTGACTCCGACTACACAACTTCCTTTCTCATGGAGAACAGTCT 868
|||| |||||||| |||||||||| ||||||||||||| || || ||||||||||||||
Sbjct 782 TTTCGAAACAAGACAAGTTGACTCAGACTACACAACTT--TT-CTTATGGAGAACAGTCT 838
Query 869 TGCATTTCGTATTTTGGGTATTGGTTTGGTCGAGCTATGTGTTGGTTTTATGCAGCTTAT 928
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 839 TGTATTTCGTATTTTGGGTATTGGTGTGGTCGAGCTATGTGTTGGTTTTGTGCAGCTTAT 898
Query 929 CATTGAAACAATATGGTGGGCTTGAGGAGATGTTCAAAAGGACTTATGGTTTCATTCTCA 988
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 899 CATTGAAACAATATGGTGGACTTGAAGAGATGTTCAAAAGGACATATGGTTTCATTCTCA 958
Query 989 GAATCGAAGATCTGTCACCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGCCTTCG 1048
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 959 GAATCGAAGATCTGTCCCCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGTCTTTG 1018
Query 1049 AGTTTTCCAGAAATTATCTCCTGATAATTTTCAACTTATATATTCTCCTTACTTCGATAC 1108
| |||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||
Sbjct 1019 ATTTTTCCAGAAATTATCTCCTGATAGTTTTTAACTTATATATTCTGCTTACGGGGATAC 1078
Query 1109 CATCTTTAATGTTCCGGTTAAAACATCGACCCTGCTTCCTTGCTTTCGCTTATTTAGCCT 1168
|| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 CACCGTTAGCCTTCCGGTTAAAACATCGGCCCTGCTTCCTTGCTTTCGCTTATTTAGCCT 1138
Query 1169 TCACTTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTAT 1228
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TCTCCTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTCT 1198
Query 1229 GGGCATTGTTTGTCAATGAATTAACAGACATGGAGTACTCGTTCTTTATCTTCTGTGGAT 1288
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1199 GGGCATTGTTTGTCAATGAATTAACAGACATGGAGCACTCGTTCTTTATCTTCTGTGGAT 1258
Query 1289 ATATCGGATTTTCGCTTCTCAGCCCTGTGATGCACAATTTCTGGATATGGAGGGGAACTG 1348
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1259 ATATTGGATTTTCGCTACTCAGCCCTGTGATGCACAATATCTGGATATGGAGGGGAACTG 1318
Query 1349 GAAATGCAAACTTCTACTTCGGAAATGCTATGGGCTATGCGTGCTTTCAGTTTATGTTTG 1408
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 GAAATGCAAACTTTTACTTCGGAAATGCTATGGGCTACGCGTGCTTTCAGTTTATGTTTG 1378
Query 1409 TGGAGAAGAGTGTAAACGCAATGCTCAACCACGACCAGGCGCTGAAGAAAGCTACTGCAG 1468
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1379 TGGAGAAAAGTGTAAACGCAATGCTCAACCATGACCAGGCGCTGAAGAACGCTACTGCAG 1438
Query 1469 AAATGACTAAGAACTGAGCCATTACAGTCA-TTTTTTAATATTCGGTGTTAAGAGTCTCT 1527
||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||
Sbjct 1439 AAATGACTAAGAACTGAGCCATTACAG-CAATTTTTTAATGTTCGGTTTTAAGAGTCTCT 1497
Query 1528 AACTATAAACTTTTGTGGCAAAATTAGTGGTCTTCTTAGGCCAAACGCAGAAGCCAAAAA 1587
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 AACCATAAACTT--GTGGCAAAATTAGTGGTCTTCTTTGGCCAAACGCAGAAGCCAAAAA 1555
Query 1588 GCGTTGAACAACATGTATTAGG-AGTCGATTGGTTTAGTGGTAAAGTGTCACATTTGCCA 1646
||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||| | |
Sbjct 1556 ACGTCGAACAACATGTATTAGGGAGTAGATTGGTTTAGTCGTAAAGTGTCACATTTACTA 1615
Query 1647 GTGATTGTAGTTGCACAGTTTAAACAAGACCTCAAACTCGGACATCCAAACCAAATGAGA 1706
||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||
Sbjct 1616 GTGATTGTAGTTGCACAGTTTTAACAAGGCTTCAAACTCGGAGATCCAAACCAAATGAGA 1675
Query 1707 CGACA 1711
|||||
Sbjct 1676 CGACA 1680
> Ahg475037 jgi|Araly1|475037|fgenesh2_kg.2__167__AT1G63110.1
Length=1719
Score = 1153 bits (624), Expect = 0.0
Identities = 1172/1428 (82%), Gaps = 72/1428 (5%)
Strand=Plus/Plus
Query 67 gaggagaa-gaaagaCGACGGAGTAATGGCTGA-G-G-AGAAG--CCT-T-ACATGTTCT 118
||| |||| ||||||||||||| |||||| || | | ||||| || | | | ||||
Sbjct 24 GAGAAGAACAAAAGACGACGGAGAAATGGCGGAGGAGCAGAAGAAGCTATGCCGT-TTCT 82
Query 119 GGATTTGGACTTTGGCTTCTACGAT--TTTCCGATT-ATTCCTGATCT-TTTCCCCGGCA 174
|||||||| |||| |||| || | ||||||||| | || |||||| || ||||| |
Sbjct 83 GGATTTGGGCTTTATCTTC--CGTTGCTTTCCGATTGA-TCTTGATCTCCTT-CCCGGGA 138
Query 175 AATATCAACCTATCTTCCCGTCCGGAGGTCTCCACCCCTCACACCAGCCTTCGCCGCCTT 234
||| |||| || |||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 139 AATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACCCCTCTCACCAGCATTCGCCGCCTT 198
Query 235 GCTGAAGGTTACTGGTTGAAGC-AGTCATCACTGTCGCCATACGCAGGATCAATGTATCA 293
||||||||||| |||||||||| || ||||| |||| |||||||||||||| ||||||||
Sbjct 199 GCTGAAGGTTATTGGTTGAAGCAAG-CATCAATGTCACCATACGCAGGATCTATGTATCA 257
Query 294 TGGCTCTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAGTTCAGAGGATCGAAGGGCA 353
||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 258 TGGCTCTCCATTGCTGCTCTCGATTCTTGGACCTCTCACAGTTCAGAGGATTAAAGGGCA 317
Query 354 ATCGAGTCATCAT-TTGTGCAGTTTGGTTTTTGTTATTGCAGATTTACTT-AGTGC-ACT 410
| | ||||| | | |||||||| ||||||||||||||||||||| || || ||||| | |
Sbjct 318 ACCAAGTCA-CCTCTTGTGCAGCTTGGTTTTTGTTATTGCAGATATA-TTAAGTGCGA-T 374
Query 411 GCTTCTTCGAGCTATTGGTCAGAAGCTCCAGAAGTCTTATAGAATGAATTTGAGGCCACT 470
||||||||||| |||||||||||| ||||||| | ||||| || ||||| ||||| |||
Sbjct 375 GCTTCTTCGAGGTATTGGTCAGAAACTCCAGATGGCTTATGGACTGAATGCGAGGCTACT 434
Query 471 TGG-TGTTCTTAGGTCATCGCAG-GATAGAGGGATCCTTCCTTGTGGAGATATTGCTGCT 528
|| | |||||| |||||| || |||| || |||||| |||||||| ||||||||||||
Sbjct 435 CGGCT-TTCTTAAGTCATC-AAGAGATAAAGTGATCCTACCTTGTGGTGATATTGCTGCT 492
Query 529 CTTGTGTATCTGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCTACTTCTCCA 588
||||||||| |||||||||||||||| ||| |||||||||| |||||||| ||||||||
Sbjct 493 CTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTGGGCTTATCAACTTCTCCC 552
Query 589 ATAGAAAATTTGGCTGTCAT-TGTGTCTCTTTATGGAGCAGTTACTCGACGAGTTCCTCT 647
|| |||||| |||||||||| | || | |||| |||||||||||| ||||||||||||||
Sbjct 553 ATCGAAAATCTGGCTGTCATAT-TGGCGCTTTTTGGAGCAGTTACCCGACGAGTTCCTCT 611
Query 648 GGCTGCATTTGGGTTAATCATGGCCACACATTTGTCTCTTTATTCAGC-ACCT-TTAGTG 705
|||||||||||| ||| |||| ||||||||||| ||||||||| | || | || | |
Sbjct 612 GGCTGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTATCCTGCTA-CTCTGA-CA 669
Query 706 TTTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTATAAAAAAGTTCCTT 765
||||| | |||||||| ||||||| |||||| ||||| |||||||| ||| |||||||
Sbjct 670 ATTCCAATAATCTTTCTATTGGGATGTGGTTTGGATGCTCCTCCTATTAAATTGTTCCTT 729
Query 766 CAGA-CAAGACATG--G-AGGGGTTGAGACTGGATCAACCTCTGA-TGTTTCTAAACAAG 820
|||| || || || | | || |||||| || || ||| | ||||||||||||||
Sbjct 730 CAGACCAGGA-GTGTAGAAAAGGAGGAGACT---TCTACATCT-ACTGTTTCTAAACAAG 784
Query 821 AAAAGTTGACTCCGAC--TACACAACTTCCTTTCTCATGGAGAACAGTCTTGCATTTCGT 878
||||||| | ||| | | | | ||||||||| ||||| ||||||| ||| || |
Sbjct 785 CCAAGTTGAAACAGACAATGCGC-A-TTCCTTTCTTATGGAAAACAGTCGCACATATCTT 842
Query 879 ATTTTGGGTA-TTGGTTTGGTCGAGCTATGTGTTGGTTTTATGCAGC-TTATCATTGAA- 935
|| |||||| || | |||||| |||||||||||| ||| | || |||||| ||||
Sbjct 843 GTTCTGGGTACTT-CTGTGGTCGCTCTATGTGTTGGTCTTAAG-TGCTTTATCACTGAAT 900
Query 936 ACAATATGGTGGGCTTGAGGAGATGTTCAAAAGGACTTATGGTTTCATTCTCAGAATCGA 995
| || ||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 901 A-AACATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTCAGTATTGA 959
Query 996 AGATCTGTCACCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGCCTTCGAGTT-TT 1054
|||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| || ||
Sbjct 960 AGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTCTTCGACTTCTT 1019
Query 1055 CCAGAAA-TTATCTCCTGATAATTTTCAACTTATATATTCTCCTTACTTCGATACCATCT 1113
|||||| || | |||||||| ||||| || || ||||||| ||| | | ||| |
Sbjct 1020 -CAGAAACTT-TTTCCTGATAGTTTTCCACGTAAATATTCTGTTTA--T-GTTACTGCCC 1074
Query 1114 TTAATGTTCCGGTTAAAACATCGACCCTGCTTCCTTGCTTTCGCT-TATTTAGCCTTCAC 1172
||| | ||||| |||||||| || |||||||| |||||| | || ||||| || |
Sbjct 1075 TTAGCCATACGGTTGAAACATCGGCCATGCTTCCTAGCTTTC-ATATACTTAGCGATCTC 1133
Query 1173 TTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTATGGGC 1232
|||||||||||||||||||| ||||| |||||| | || ||||||||||| ||||||||
Sbjct 1134 CTCGATTCTTAAATCTTATCCCTCAGTCGGAGATTCGGCATTATACTTGAGCTTATGGGC 1193
Query 1233 ATTGTTTGTCAATGAATTAACAGACATGGAGTACTCGTTCTTTATCTTCTGTGGATATAT 1292
|||||||||||||||||||| ||| ||| ||| ||| ||||| |||||||||||||| |
Sbjct 1194 ATTGTTTGTCAATGAATTAATAGATATGAAGTTCTCATTCTTCCTCTTCTGTGGATATCT 1253
Query 1293 CGG-ATTTTCGCTTCTCAGCCCTGTGATGCACAATTTCTGGATATGGAGGGGAACTGGAA 1351
||| |||| | || ||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 1254 CGGGATTT-CTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAA 1312
Query 1352 ATGCAAACTTCTACTTCGGAAATGCTATGGGCTATGCGTGCTTTCAGTTTATGTTT-GTG 1410
| ||||| |||||||| ||||| ||||| ||||| || ||||||||| || | ||| |||
Sbjct 1313 ACGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCATGCTTTCAGATTGT-TTTCGTG 1371
Query 1411 GA-GAAGAGTGTAAACGCAATGCTCAACCACGACCAGG-CGCTGAAGA 1456
| || ||| |||| ||||||||| ||||| ||| ||| |||||||||
Sbjct 1372 GTTGA-GAGCGTAAGCGCAATGCTAAACCATGAC-AGGGCGCTGAAGA 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5