BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12740.2
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312293 jgi|Araly1|312293|fgenesh1_pm.C_scaffold_1001073 2150 0.0
Ahg907117 jgi|Araly1|907117|Al_scaffold_0002_198 590 2e-167
> Ahg312293 jgi|Araly1|312293|fgenesh1_pm.C_scaffold_1001073
Length=1437
Score = 2150 bits (1164), Expect = 0.0
Identities = 1364/1455 (94%), Gaps = 36/1455 (2%)
Strand=Plus/Plus
Query 181 ATGTGGGCATTGCTCATTTGGGTTTCTTTGCTTCTCATAAGTATCACACATTGGGTTTAT 240
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGGCATTGTTCATTTGGGTTACTCTGCTTCTCATAAGTATCACACATTGGGTTTAT 60
Query 241 AGTTGGAGAAATCCTAAATGCAGAGGGAAACTTCCACCTGGTTCCATGGGTTTCCCTTTA 300
|||||||| || |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 61 AGTTGGAGGAACCCTAAATGCAGAGGTAAGCTTCCACCTGGTTCCATGGGTTTCCCGTTA 120
Query 301 CTCGGCGAGAGTATCCAATTCTTCAAGCCAAACAAAACTTCAGACATCCCTCCTTTTATC 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGGCGAGACTATCCAATTCTTCAAGCCAAACAAAACTTCAGACATCCCTCCTTTTATC 180
Query 361 AAAGAGAGAGTTAAGAATGATGTTGATATGTGCAGGTATGGCCCAATTTTCAAGACCAAT 420
||||| ||||||||| | | | || | || | ||||||||||||||||||
Sbjct 181 AAAGAAAGAGTTAAG-A--A----G-TA--T---GG--T---CCAATTTTCAAGACCAAT 222
Query 421 CTGGTGGGGAGACCAGTTATTGTATCAACAGATGCTGATTTGAGTTATTTTGTGTTTAAC 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTCGTGGGGAGACCAGTTATTGTATCAACAGATGCTGATTTGAGTTATTTTGTGTTTAAC 282
Query 481 CAAGAGGGACGTTGTTTCCAGAGTTGGTATCCAGACACTTTTACACACATCTTTGGGAAG 540
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 283 CAAGAGGGTCGTTGTTTCCAGAGTTGGTATCCAGACACTTTTACCCACATCTTTGGGGAG 342
Query 541 AAGAATGTGGGTTCATTACATGGTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACT 600
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 AAGAATGTGGGATCACTACATGGTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACT 402
Query 601 CTCTTTGGCCATGATGGTCTCAAGAAGATGCTTCCTCAAGTAGAAATGACTGCCAATAAG 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 403 CTCTTTGGCCATGATGGTCTCAAGAAGATGCTTCCTCAAGTCGAAATGACTGCTAATAAG 462
Query 661 AGGTTGGAGCTTTGGTCAAATCAAGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATG 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 AGGTTGGAGCTTTGGTCAAATCAGGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATG 522
Query 721 ATATTTGATCTCACCGCGAAGAAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ATATTTGATCTCACCGCGAAGAAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAAT 582
Query 781 CTAAGGGCAAACTTTGTTGCTTTCATACAGGGATTGATCTCTTTCCCTTTTGATATCCCA 840
||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 583 CTAAGGGCAAATTTTGTTGCTTTCATTCAGGGATTAATCTCTTTCCCTTTTGACATCCCA 642
Query 841 GGCACAGCTTATCACAAATGTCTACAGGGTAGGGCAAAGGCAATGAAAATGTTGAGGAAT 900
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 643 GGAACAGCTTATCACAAATGTCTACAGGGTAGGGAAAAGGCAATGAAAATGTTGAGGAAT 702
Query 901 ATGCTTCAAGAGAGGCGTGAGAACCCTCGGAAGAATCCAAGTGATTTCTTTGATTATGTT 960
|||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||
Sbjct 703 ATGCTTCAAGAGAGGCGTAAGAAACCGCGGAAGAACCCAAGTGATTTCTTTGATTATGTT 762
Query 961 ATTGAAGAGATTCAGAAAGAAGGGACAATTCTGACAGAAGAGATTGCACTGGATTTGATG 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATTGAAGAGATTCAGAAAGAGGGGACAATTCTGACAGAAGAGATTGCACTGGATTTGATG 822
Query 1021 TTTGTCTTGCTATTTGCCAGCTTTGAAACAACTTCTTTGGCTCTAACTTTAGCTATCAAG 1080
|||||||| |||||||| |||||||||||||| ||| ||||| |||||||||| ||||||
Sbjct 823 TTTGTCTTACTATTTGCTAGCTTTGAAACAACATCTCTGGCTATAACTTTAGCCATCAAG 882
Query 1081 TTTCTCTCAGATGACCCTGAAGTCCTAAAGCGTTTAACGGAAGAACATGAGACAATTCTG 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTTCTCTCAGATGACCCTGCAGTCCTAAAGCGTTTAACGGAAGAACATGAGACAATTCTG 942
Query 1141 AGAAACCGGGAAGATGCAGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACTTAC 1200
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AGAAACCGGGAAGATGCTGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACTTAC 1002
Query 1201 ACATTTCAGTTCATAAACGAAACCGCGAGACTAGCAAATATAGTTCCTGCAATCTTCAGA 1260
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1003 ACATTTCAGTTCATAAACGAAACAGCGCGACTAGCAAATATAGTTCCTGCAATCTTCAGA 1062
Query 1261 AAGGCGTTGAGAGATATAAAATTCAAAGA-TT----A-T-A--C-GATT---C----C-A 1302
|||||| ||| |||||||||||||||||| || | | | | |||| | | |
Sbjct 1063 AAGGCGCTGATAGATATAAAATTCAAAGAGTTTGTCAATGATGCAGATTATACAATTCCA 1122
Query 1303 GCCGGCTGGGCGGTGATGGTCTGTCCACCAGCTGTACATTTGAATCCCGAAATGTATAAA 1362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1123 GCCGGCTGGGCGGTGATGGTCTGTCCACCAGCTGTACATTTGAATCCAGAAATGTATAAA 1182
Query 1363 GATCCTTTAGTCTTTAATCCATCAAGATGGGAGGGATCAAAAGTTACAAACGCATCAAAG 1422
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1183 GATCCTTTAGTCTTTAATCCATCAAGATGGGAGGGATCAAAAGTTACTAATGCATCAAAG 1242
Query 1423 CACTTCATGGCGTTTGGTGGAGGTATGAGGTTCTGCGTTGGAACCGACTTCACAAAATTG 1482
||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1243 CACTTCATGGCCTTTGGTGGCGGTATGAGGTTCTGTGTTGGAACCGACTTCACGAAATTG 1302
Query 1483 CAGATGGCTGCGTTTCTTCACAGCTTGGTAACAAAATACAGGTGGGAGGAGATAAAAGGA 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1303 CAGATGGCTGCGTTTCTTCACAGCTTGGTAACAAAATACAGGTGGGAGGAGATTAAAGGA 1362
Query 1543 GGGAATATAACTCGAACGCCTGGATTACAGTTTCCAAATGGTTACCATGTCAAACTCCAT 1602
||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GGGAATATAGTTCGAACTCCAGGATTACAGTTTCCAAATGGTTACCATGTCAAACTCCAT 1422
Query 1603 AAGAAGAGAGACTAG 1617
|| ||||||||||||
Sbjct 1423 AAAAAGAGAGACTAG 1437
> Ahg907117 jgi|Araly1|907117|Al_scaffold_0002_198
Length=987
Score = 590 bits (319), Expect = 2e-167
Identities = 630/773 (82%), Gaps = 49/773 (6%)
Strand=Plus/Plus
Query 446 CAACAGATGCTGATTTGAGTTATTTTGTGTT-TAACCAAG-AGGGACGTTGTTTCCAGAG 503
||||||| ||| ||| |||||||||||||| || |||| ||| | | ||||||||| |
Sbjct 1 CAACAGACCCTGGTTTTAGTTATTTTGTGTTCCAA-CAAGAAGGTA-GATGTTTCCAGTG 58
Query 504 TTGGTATCCAGACACTTTTACACACATCTTTGG-GAAGAAGAATGTGGGTTCATTACATG 562
||||||||| |||||||| || | |||||||| ||| |||||||||| ||||||||||
Sbjct 59 TTGGTATCCTGACACTTTCACTGAGATCTTTGGAAAAGCAGAATGTGGGATCATTACATG 118
Query 563 GTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACTCTCTTTGGCCATGATGGTCTCA 622
| |||||| | |||||||| || ||||||| |||| || | || ||| | ||
Sbjct 119 GGTTCATGCATAAGTACCTCAAGCACATGGTCTTGA--GTC--T----AT-TTGG-C-CA 167
Query 623 AGAAGATGCTTCCTCAAGTAGAAATGACTGCCAATAAGAGGTTGGAGCTTTGGTCAAATC 682
||| | | | |||||| | | ||| || || | || || || | || || ||
Sbjct 168 TGAA-A-G--T-CTCAAG-A-AGATG-CTTCC--T--GAAATT-GAAC-AAAGT-AACTC 212
Query 683 AAGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATGATATTTGATCTCACCGCGAAGA 742
|| | | | || || |||||| || |||||| |||||||||||||||||||||| |
Sbjct 213 AA-A-T--G-AG--CTGAAAGATTCAGTGGCAAGCTTGATATTTGATCTCACCGCGAAAA 265
Query 743 AGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAATCTAAGGGCAA-ACTTTGTTGCT 801
||||||| ||||||||| |||| ||||| |||||||||||||||| || ||||||||||
Sbjct 266 AGTTGATAAGCCATGATACAGAGAAGTCCTCAGAGAATCTAAGGG-AATACTTTGTTGCG 324
Query 802 TTCATACAGGGATTGATCTCTTTCCCTTTTGATATCCCAGGCACAGCTTATCACAAATGT 861
||||| || || |||||||| |||||| |||| |||||||| |||||||||||||| ||
Sbjct 325 TTCATCCACGGTTTGATCTCCTTCCCTATTGACATCCCAGGGACAGCTTATCACAAGTGC 384
Query 862 CTACAGGGTAGGGCAAAG-GCAATGAAAATGTTGAGGAATATGCTTCAAGAGAGGCGTGA 920
||| ||||||||| |||| || |||||||||||||||||||||||||||||| || ||||
Sbjct 385 CTAAAGGGTAGGG-AAAGTGCGATGAAAATGTTGAGGAATATGCTTCAAGAGCGGTGTGA 443
Query 921 GAACCCTCGGAAGAATCCAAGTGATTTCTTTGATTATGTTATTGAAGAGATTCAGAAAGA 980
||| || || ||||||| ||||| |||||||||||||| || |||||| || |||||||
Sbjct 444 GAAGCCAAGGGAGAATCCGAGTGACTTCTTTGATTATGTCATCGAAGAGCTTAAGAAAGA 503
Query 981 AGGGACAATTCTGACAGAAG-AGATTGCACTGGATTTGATGTTTGTCTTGCTATTTGCCA 1039
||| |||||||||||||||| | |||||||| || |||||||||| |||||| ||||| |
Sbjct 504 AGGCACAATTCTGACAGAAGCA-ATTGCACTAGACTTGATGTTTGCCTTGCTTTTTGCTA 562
Query 1040 GCTTTGAAACAACTTCT-TTGGCTCTAACTTTAGCTATCAAGTTTCTCTCAGATGACCCT 1098
|||| |||||||||||| || || |||| |||||||||||||| |||||||| |||||
Sbjct 563 GCTTCGAAACAACTTCTCTTT-CTTTAACATTAGCTATCAAGTTCCTCTCAGACAACCCT 621
Query 1099 GAAGTCCTAAAGCGTTTAACGGAAGAACATGAG-ACAATTCTGAGAAACCGGGAAGATGC 1157
||||||||| ||| |||||||||| |||||| | |||| || ||||||| ||||||||
Sbjct 622 TCAGTCCTAAAACGTCTAACGGAAGAGCATGAGGA-AATTTTGGGAAACCGTGAAGATGC 680
Query 1158 AGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACT-TACACATTTCAG 1209
|||||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 681 TGACTCTGGACTTACATGGAAAGAATACAAATCAATGACTATACACATTTCAG 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5