BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12750.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471427 jgi|Araly1|471427|fgenesh2_kg.1__1381__AT1G12750.2 1550 0.0
> Ahg471427 jgi|Araly1|471427|fgenesh2_kg.1__1381__AT1G12750.2
Length=1206
Score = 1550 bits (839), Expect = 0.0
Identities = 1078/1191 (91%), Gaps = 26/1191 (2%)
Strand=Plus/Plus
Query 87 GTTTCTGCAGGAGATGAGATGAT-C-T-----CTCCTATGCGAATCTGCTATGGAGTTCA 139
|||||||||||||||| ||| || | | ||||||||||||||||| |||| ||| |
Sbjct 24 GTTTCTGCAGGAGATGGGATAATCCGTAAGCGCTCCTATGCGAATCTGCAATGGGGTTGA 83
Query 140 ATCATATCTCCAGCTTCGCAGTCCCTTG-TTCATGATA-CAGCTAAAACAGCCAACCTAG 197
||| ||||||||||| ||||||| ||| | | | || | || | | || | ||
Sbjct 84 ATCGTATCTCCAGCTACGCAGTCTTTTGCGT-AAGCTAGC-CCTTGTTC-GAGAAAC-AG 139
Query 198 --TCAGGTCTGAGATATTTATCAGAAAGTTAAAGG-AAATATCTTGAAAGAGCCTGCCAC 254
||||||||||||| |||||||||||||| |||| |||||||||||| ||| |||||||
Sbjct 140 TCTCAGGTCTGAGATTTTTATCAGAAAGTTTAAGGAAAATATCTTGAAGGAG-CTGCCAC 198
Query 255 CACCGAGAAGAGAATTGAAGAAACACCAATTCTGTTCTTCATACGACGAGAGAAGAGAAA 314
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 199 CACCGAGAAGAGAATTGAAGAAACATCAATTGTGTTCTTCATACGACGAGAGAAGAG-AA 257
Query 315 AATGAGGAGTAGAGATATGGAGAGAGGTAGGAAACACAGAGGGGACACCCAGTGGACGGC 374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 258 AATGTCGAGTAGAGATATGGAGAGAGGTAGGAAACACAGAGGGGACACCCAGTGGACGTC 317
Query 375 TTGGCTGACTCCAACAATTGTCGTGGCTAATGTCTCCATCTTCATCGTTGTCATGTACAC 434
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 318 GTGGCTGACTCCAACAATTGTCGTGGCTAATGTCACCATCTTCATCGTGGTCATGTTCAT 377
Query 435 CAACGACTGCCCTAAGACAACCACGGGAGCCAACGGAGATTGCGTTGCAAAGCTTCTCCG 494
||||||||||||||||||||||| |||||| |||| ||||||||| |||||| ||||| |
Sbjct 378 CAACGACTGCCCTAAGACAACCAGGGGAGCTAACGAAGATTGCGTGGCAAAGTTTCTCGG 437
Query 495 CAGGTTCTCGTTTCAGCCACTCAGAGAGAACCCTTTCTTGGGTCCATCTTCTTCAACATT 554
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 438 CAGGTTCTCGTTTCAGCCGCTCAGAGAGAACCCTCTCTTGGGTCCATCTTCTTCAACATT 497
Query 555 GGAGAAATTGGGAGCTTTGGATTGGAAGAAAGTCGTGCAAGGAAATGAAAAATGGAGGCT 614
||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 498 GGAGAAAATGGGAGCTTTGGATTGGAGGAAAGTTGTGCAAGGAAATGAAAAATGGAGGCT 557
Query 615 CATCACTGCTATGTGGCTCCATGCCGGTATCATTCACCTTGTTA-TGAATATGTTTGATG 673
||||||||| |||||||||||||| |||||| |||||||| ||| | ||||||||| |||
Sbjct 558 CATCACTGCAATGTGGCTCCATGCTGGTATCTTTCACCTTTTTACT-AATATGTTTAATG 616
Query 674 TGATCATCTTCGGTATCCGCCTTGAGCAACAGTTTGGCTTCATAAGGATTGGGCTCATCT 733
||||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 617 TGATCATATTCGGTATCCGCCTTGAGCAGCAGTTTGGCTTCCTAAGAATTGGGCTCATCT 676
Query 734 ATC-TGATTTCGGGATTTGGCGGAAGCATTCTCTCAGCTCTCTTCCTTCAAAAAAGCATC 792
| | |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 677 A-CTTGATATCGGGATTTGGCGGAAGCATTCTCTCAGCTCTCTACCTTCAAAATAGCATC 735
Query 793 TCTGTTGGTGCCTCGGGTGCTCTCCTTGGACTCATGGGAGCAATGTTATCTGAGCTGCTC 852
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 736 TCTGTTGGTGCCTCGGGTGCTCTCCTTGGACTCATTGGAGCAATGTTATCCGAGCTGGTC 795
Query 853 ACCAACTGGACTATCTACAAGAGCAAGCTTTGTGCTTTGTT-ATCGTTCTTGTTCATCAT 911
| |||||||||||||||| |||||||||| ||||||||||| | || |||||||||||||
Sbjct 796 ATCAACTGGACTATCTACGAGAGCAAGCTATGTGCTTTGTTCA-CGATCTTGTTCATCAT 854
Query 912 CGCAATCAATTTGGCAATAGGTTTGCTTCCTTGGGTAGACAACTTTGCTCACATTGGCGG 971
|||| || |||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 855 CGCACTCGATTTAGCAATAGGTTTGCTTCCTTGGGTTGACAACTTTGCTCACATTGGGGG 914
Query 972 TCTCTTGACTGGGTTTTGCCTTGGGTTTATCCTACTGATGCAGCCTCA-GTCTGGGTGGG 1030
||||||||||| |||| ||||||||||||||||||||| |||||||| || |||||||
Sbjct 915 GCTCTTGACTGGATTTTTCCTTGGGTTTATCCTACTGATCCAGCCTCAGGT-GGGGTGGG 973
Query 1031 AAGAGTTCCGCAACTCTTCTCAGTACGGTGCCCGTGCTAGATCAAAATATAACCCGTGCC 1090
|||||| |||||||||||||||||||||||| ||||| | |||||| |||||||||||||
Sbjct 974 AAGAGTCCCGCAACTCTTCTCAGTACGGTGCACGTGCCAAATCAAAGTATAACCCGTGCC 1033
Query 1091 AGTACGTGTTGTTCTTTGTTGCCGCTGTTTTGGTTGTCGCCGGTTTAACAGTTGGGTTGG 1150
||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1034 AGTACTTGTTGTTCTTTATTGCCGCTGTTTTGGTCGTCGCCGGTTTAACAATTGGGTTGG 1093
Query 1151 TGATGCTGTTCGACGGAGAGAATGGGAACAAGCATTGCAAATGGTGTCATCGCCTAGACT 1210
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1094 TGATGCTGTTCAAAGGAGAGAATGGGAACAAACATTGCAAATGGTGTCATCGCCTAGACT 1153
Query 1211 GTTATCCTACTTCTAAATGGTCTTGTTGATATTTCAATCATCATTACTGTA 1261
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1154 GTTATCCTACTTCTAAATGGTCTTGTTGATATTTCAATCATTTTTACTGTA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5