BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12760.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471429 jgi|Araly1|471429|fgenesh2_kg.1__1383__AT1G12760.2 2104 0.0
Ahg924663 jgi|Araly1|924663|scaffold_200224.1 562 3e-159
Ahg938835 jgi|Araly1|938835|scaffold_503026.1 217 3e-55
Ahg359273 jgi|Araly1|359273|fgenesh1_pg.C_scaffold_85000005 209 5e-53
Ahg946012 jgi|Araly1|946012|scaffold_702241.1 134 3e-30
Ahg925515 jgi|Araly1|925515|scaffold_201076.1 126 5e-28
Ahg925518 jgi|Araly1|925518|scaffold_201079.1 122 6e-27
Ahg907912 jgi|Araly1|907912|Al_scaffold_0002_993 111 1e-23
> Ahg471429 jgi|Araly1|471429|fgenesh2_kg.1__1383__AT1G12760.2
Length=1691
Score = 2104 bits (1139), Expect = 0.0
Identities = 1329/1415 (94%), Gaps = 36/1415 (3%)
Strand=Plus/Plus
Query 385 GGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGTCGTGCTAGTAGCGGACGCGTGA 444
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct 313 GGAGACAAGGGTTGAGAGAAGCCGCGAGGTTTCTAAGTCGTGCAAGTAGCGGACGTGTGA 372
Query 445 TGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGGAGCAGCTCGAGGAGAGGCAGA 504
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 373 TGCGTGAGCCTTCTATGCTTGTGAGGGAAGCCGCGGCGGAGCAGCTGGAGGAGAGGCAGA 432
Query 505 GCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTTGATATCGTTTGGAATCTGGCTTTTG 564
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 433 GCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTTGATATTGTGTGGAATCTGGCTTTTG 492
Query 565 TTTCTGTTGCTACGGCTATTTTGGTGATGAGCAGGAAAGAACATCCGATTATGCCGCTTA 624
|||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 493 TTTCGGTTGCTACGGCTATTTTGGTGATGAGCCGGAATGAACATCCGATTATGCCGCTTA 552
Query 625 GAGTTTGGCTTTTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTGTCTGTGTTG 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 GAGTTTGGCTTTTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTGTGTGTGTTG 612
Query 685 AGTATCGGAGGAGGAACAGGAGGAGAACCAATAGGACGACGACGACGACTCCTCCACGGT 744
|||||||||||||||| |||||||||||||||| | ||||||||||| ||||||| |
Sbjct 613 AGTATCGGAGGAGGAATAGGAGGAGAACCAATA-G--GACGACGACGA---CTCCACGCT 666
Query 745 CACGttcttcttcttcctcttcatcttcttcttccttGGAGGAAGAAGCTTTGGGTTCCA 804
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 667 CACGTTCTTCTTCTTCCTCTTCATCTTCTTCTTCCTTGGAGGAAGATGCTTTGGGTTCCA 726
Query 805 GGAGGAATTCAGGTGTGCAGGACTTGTCGCTTGGCCACTTGGATACCGAAAGCAGCAGTG 864
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 727 GGAGGAATTCAGGTGAGCAGGACTTGTCCCTCGGCCACTTGGATACCGAAAGCAGCAGTG 786
Query 865 TTGCTAAGCATCTGGAATCTGCCAATACGATGTTTTCTTTTATATGGTGGATCATTGGAT 924
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 787 TTGCAAAACATCTGGAATCTGCCAATACAATGTTTTCCTTTATATGGTGGATCATTGGAT 846
Query 925 TCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGC 906
Query 985 TGTCTATTGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTCTTCTGTGTTGCGTTGGCCT 1044
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 907 TGTCTATTGTCTTTCTTGGTTTCGATGTGTTTTTTGTTGTCTTCTGTGTTGCGTTGGCCT 966
Query 1045 GCGTTATTGGAATTGCGGTTTGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTG 1104
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GTGTTATTGGAATTGCTGTTTGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTG 1026
Query 1105 TTGCTGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTC 1164
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TTGCAGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTC 1086
Query 1165 GCAAACTAGGTGATGCCAACAAACACACTAATGATGAAGCCCAAGGAACTACCGAGGGAA 1224
||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1087 GCAAAGTAGGTGATGCTAACAGACACACTGGTGATGAAGCCCAAGGAACTACCGAGGGAA 1146
Query 1225 TAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTCTTTTGCAAGAAGATGCAG 1284
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1147 TAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTCTATTGCAAGAGGATGCAG 1206
Query 1285 AATGTTGCATCTGTCTCTCTGCATATGAAGACGGAACAGAGCTAAGGGAACTACCTTGTG 1344
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1207 AATGTTGCATCTGTCTCTCTGCATATGAAGATGGAACAGAGCTAAGGGAACTACCTTGTG 1266
Query 1345 GACACCATTTCCACTGTTCATGCGTAGACAAATGGCTATACATCAACGCGACTTGCCCAC 1404
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GACACCATTTCCACTGTTCGTGCGTAGACAAATGGCTATACATCAACGCGACTTGCCCAC 1326
Query 1405 TCTGCAAATACAACATCCTCAAGAGTAGCAACTTGGATCGAGAGGAAGTCTAGAGGAAAC 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1327 TCTGCAAATACAACATCCTCAAGAGTAGCAACTTGGATCGAGAGGAAGTCTAGAAAAAAC 1386
Query 1465 AACTTTACGTGTTCATGACCCACGACATTTGATCAGGAGACTTTGGGTTAAGGTAAAAAA 1524
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1387 AGCTTTACGTGTTCATGACCCACAACATTTGATCAGGAGACTTGGGGTTAAGGTAAAAAA 1446
Query 1525 CAAGACTGGTTTGtttttttAGATACGATGCATTGTTTGTGAAATGATAATGATATCTAT 1584
||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 1447 CAAGACTGGTTTGTTTTTT-AGATATGATGCATTGTTTGTGATATGATAATGATATCTAT 1505
Query 1585 ACGAAATTATTACACttttgtttgtttttgatttttggtttgGAAACTAATCAGGTCTGT 1644
|| || |||| ||| | | ||||||||||||||||||||||
Sbjct 1506 AC----TT-----------GTTT-TTT--G------G-TTTGGAAACTAATCAGGTCTGT 1540
Query 1645 ACATCTATCTGTATCTATCTTCTTTTACTTGAAACCAATGTTTTGTAGTTTGTATTACCT 1704
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1541 ACATCTATCTGTATCTATCTTCTTTCACTTGAAACCAATGTTTTGTAGTTTGTACTACCT 1600
Query 1705 CTTTCTTTCTCAGTCGACCTCGAATTGTTAGAGATTTCCATCATCGTAGATCTTTAGTCA 1764
|||||| | |||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1601 CTTTCT--C--AGTCGACCTCGAATTGTTAGAGATTTTCATCATCTTAGATCTTTAGTTA 1656
Query 1765 TGTCTCAATGACGATTTTGATTGTTACTTTAAAGT 1799
||| |||||||||||||||||||||| ||||||||
Sbjct 1657 TGTGTCAATGACGATTTTGATTGTTAATTTAAAGT 1691
> Ahg924663 jgi|Araly1|924663|scaffold_200224.1
Length=1163
Score = 562 bits (304), Expect = 3e-159
Identities = 574/703 (82%), Gaps = 24/703 (3%)
Strand=Plus/Plus
Query 771 tcttcttcct-tGGAGGAAG-A-A-GCTTTGGGTTCCAGGAGGAATTCAGGTG-TGCAG- 824
||||||| || ||||||||| | | | |||||||| || || || |||| || | | |
Sbjct 450 TCTTCTT-CTATGGAGGAAGAAGATGGTTTGGGTTTGAGTAGAAACTCAGATGAT-C-GT 506
Query 825 GACTTGTCGCTTGGCCACTTGGATACCGAAAGCAGCAGTGTTGCTAAGCATCTGGAATCT 884
||||| ||| || || || || | |||| || |||| ||||||||||||| ||||||
Sbjct 507 TACTTGGAGCTAGGTCAATTAGAGAATGAAAACAACAGTTTTGCTAAGCATCTAGAATCT 566
Query 885 GCCAATACGATGTTTTCTTTTATATGGTGGATCATTGGATTCTACTGGGTATCTGCTGGT 944
|| ||||||||| | || |||||||||||| | ||||||||||||||||||||| |||||
Sbjct 567 GCAAATACGATGATCTCATTTATATGGTGGGTTATTGGATTCTACTGGGTATCTTCTGGT 626
Query 945 GGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGCTGTCTATTGTCTTTCTTGGT 1004
||||||||||| || |||| |||||||| | |||| ||| | | ||| ||||||||||||
Sbjct 627 GGCCAAGAGTTAGCGCAAGGATCCCCTCAGCTTTATTGGTTATGTATAGTCTTTCTTGGT 686
Query 1005 TTCGATGTGTTCTTTGTTGTCTTCTGTGTTGCGTTGGCCTGCGTTATTGGAATTGCGGTT 1064
||||||||||||||||| || ||||| ||||| ||||| || |||||||| ||||| |||
Sbjct 687 TTCGATGTGTTCTTTGTGGTTTTCTGCGTTGCATTGGCTTGTGTTATTGGCATTGCTGTT 746
Query 1065 TGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTGTTGCTGATCAGGAAGGGGCT 1124
||||| ||| |||| ||||||||||||||| | ||||| ||||| || |||||||| |||
Sbjct 747 TGCTGCTGCTTGCCTTGCATCATTGCAGTTCTATACGCCGTTGCAGAACAGGAAGGAGCT 806
Query 1125 TCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTCGCAAA-CTAGGTGATGCCAA 1183
|| |||||||||||||| || || || |||||||| || || ||| | |||||| |
Sbjct 807 TCGAAAGAAGACATTGACCAACTTACTAAATTCAAATTCCG-AAAGGTTGGTGATTCTGT 865
Query 1184 CAAACACACTAATGATGAAGCCCAAGGA-ACTAC-CGAGGGAATAATGACTGAGTGTGGT 1241
||||||||| |||||||| |||||| | | | || ||| | |||||||| ||||||
Sbjct 866 GAAACACACTGTTGATGAAGAACAAGGAGA-TTCAGGA-GGAGTGATGACTGAATGTGGT 923
Query 1242 ACAGATTCACCCATTGAACATACTCTT-TTGCAAGAAGATGCAGAATGTTGCATCTGTCT 1300
|||||||||||| | |||||||||||| | || || ||||||||||| ||||| |||||
Sbjct 924 ACAGATTCACCCGTCGAACATACTCTTCCT-CATGAGGATGCAGAATGCTGCATTTGTCT 982
Query 1301 CTCTGCATATGAAGACGGA-ACAGAGCTAAGGGAACTACCTTGTGGACACCATTTCCACT 1359
|| || ||||||||| || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 983 TTCGGCGTATGAAGAC-GAGACAGAGCTTAGAGAACTTCCTTGTGGCCACCATTTCCATT 1041
Query 1360 GTTCATGCGTAGACAAATGGCTATACATCAACGCGACTTG-CCCACTCTGCAAATACAAC 1418
|| || || ||||||||||| ||||| ||||| ||||| ||| |||||||||||||||
Sbjct 1042 GTGGTTGTGTGGACAAATGGCTTTACATAAACGCTACTTGTCCC-CTCTGCAAATACAAC 1100
Query 1419 ATCCTCAAGAGTAGCAACTT-G--GATCGAGAGGAAGTCTAGA 1458
||||||||||||||||||| | || | |||||||||||||
Sbjct 1101 ATCCTCAAGAGTAGCAACTACGAAGAAGGCGAGGAAGTCTAGA 1143
> Ahg938835 jgi|Araly1|938835|scaffold_503026.1
Length=468
Score = 217 bits (117), Expect = 3e-55
Identities = 149/165 (90%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 363 GGTGGGGAACGGAGATCTGTCAGGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGT 422
|||||||||||||||||||| ||||||||||| |||| |||| | ||||||||||| |||
Sbjct 100 GGTGGGGAACGGAGATCTGTTAGGAGACAAGGTTTGATAGAATCGGCGAGGTTTCTGAGT 159
Query 423 CGTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCG 482
|||| ||||||||||| |||||| | |||||||||||||||||||| || || ||||||
Sbjct 160 TGTGCGAGTAGCGGACGTGTGATGAGGGAGCCATCTATGCTTGTGAGGGAGGCTGCGGCG 219
Query 483 GAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT 527
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 220 GAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT 264
> Ahg359273 jgi|Araly1|359273|fgenesh1_pg.C_scaffold_85000005
Length=642
Score = 209 bits (113), Expect = 5e-53
Identities = 147/164 (90%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 364 GTGGGGAACGGAGATCTGTCAGGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGTC 423
||||||||||||||||||| ||||||||||| |||| |||| | ||||||||||| |||
Sbjct 212 GTGGGGAACGGAGATCTGTTAGGAGACAAGGTTTGATAGAATCGGCGAGGTTTCTGAGTT 271
Query 424 GTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGG 483
|||| ||||||||||| |||||| | ||||| |||||||||||||| || || |||||||
Sbjct 272 GTGCAAGTAGCGGACGTGTGATGAGGGAGCCGTCTATGCTTGTGAGGGAGGCTGCGGCGG 331
Query 484 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT 527
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 332 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT 375
> Ahg946012 jgi|Araly1|946012|scaffold_702241.1
Length=343
Score = 134 bits (72), Expect = 3e-30
Identities = 88/96 (92%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 424 GTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGG 483
|||| ||||||||||| |||||| | ||||| |||||||||||||| || || |||||||
Sbjct 3 GTGCGAGTAGCGGACGTGTGATGAGGGAGCCGTCTATGCTTGTGAGGGAGGCTGCGGCGG 62
Query 484 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATT 519
||||||||||||||||||||||||||||||||||||
Sbjct 63 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATT 98
> Ahg925515 jgi|Araly1|925515|scaffold_201076.1
Length=310
Score = 126 bits (68), Expect = 5e-28
Identities = 92/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 424 GTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGG 483
|||| |||||| |||| |||||| | |||||||||||| ||||||| || || ||| |||
Sbjct 3 GTGCGAGTAGCAGACGTGTGATGAGGGAGCCATCTATGATTGTGAGGGAGGCTGCGACGG 62
Query 484 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT 527
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 63 AGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT 106
> Ahg925518 jgi|Araly1|925518|scaffold_201079.1
Length=308
Score = 122 bits (66), Expect = 6e-27
Identities = 88/99 (89%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 429 AGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGGAGCAG 488
|||||||||| |||||| | |||||||||||| ||||||| || | ||||||||||||
Sbjct 6 AGTAGCGGACATGTGATGAGGGAGCCATCTATGATTGTGAGGGAGGTTGCGGCGGAGCAG 65
Query 489 CTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCT 527
||||||||||||||||||||||||||||||| ||||||
Sbjct 66 CTCGAGGAGAGGCAGAGCGATTGGGCTTATTTTAAGCCT 104
> Ahg907912 jgi|Araly1|907912|Al_scaffold_0002_993
Length=336
Score = 111 bits (60), Expect = 1e-23
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 450 GAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGAT 509
|||||||||||| ||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 7 GAGCCATCTATGATTGTGAGGGAGGCTGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGAT 66
Query 510 TGGGCTTATTCGAAGCCT 527
|||||||||| ||||||
Sbjct 67 TGGGCTTATTTTAAGCCT 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5