BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12770.1
Length=2069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471430 jgi|Araly1|471430|fgenesh2_kg.1__1384__AT1G12770.1 3086 0.0
> Ahg471430 jgi|Araly1|471430|fgenesh2_kg.1__1384__AT1G12770.1
Length=2023
Score = 3086 bits (1671), Expect = 0.0
Identities = 1923/2041 (94%), Gaps = 32/2041 (2%)
Strand=Plus/Plus
Query 43 TAAAGAAAACCGAGAATGTACCGGTTTATCTTCAGACCCGGTTG-TTTGTCCGGTTTGGT 101
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1 TAAAGAAAACCGAGAATGTACCGGTTTATCTGCAGACCCGGTTGTTTTGTCCGGTTTGGT 60
Query 102 AAAATTAGAACCTAACCTTTTTATCCAG-AACTGGAGACTTTG-GAAG-AACTATA-G-A 156
|||||||| | | || |||||||||| |||| | | | | |||| || | | | |
Sbjct 61 GAAATTAGAGCAGATCC-TTTTATCCAGAAACT-GTG--TGAGAGAAGTAA--AGACGCA 114
Query 157 AGTGTTGTTCTCTTCGTATCGTCCTCAATCCTCATGGAGACTATTATCAGGCTGTTTT-- 214
|| |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 115 AGAGTTGTTCTCTTCGTATCG-------T--TCATGGAGACTATTATCAGGCTGTTTTGA 165
Query 215 GAGCAAACGCTGTGATAAAGAGGCTTTCTTTCTTGCTAGCAAGTACACACGAGTGACATG 274
||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||
Sbjct 166 GAGCAAACGCTGTGATAAATAGGCTTTCTTCCTTGTTAGCAAGCACACACGAGTGACATG 225
Query 275 GCGGCATCAACTTCAACCCGATTCCTTGTTCTGCTCAAAGATTTTTCTGCCTTCAGAAAG 334
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 226 GCGGCATCTGCTTCAACCCGATTCCTTGTTCTGCTCAAAGAGTTTTCTGCCTTCAGAAAG 285
Query 335 ATATCATGGACTTGTGCTGCAACTAATTTTC-ACCGCCAATCTCGTTTTTTATGCCATGT 393
||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 286 ATATCTTGGACTTCTGCTGCAACTAA-TTTCTACCGCCAATCTCGTTTTTTATGCCATGT 344
Query 394 TGCGAAAGAAGACGGGTCTCTTACTCTTGCAAGCCTTGATTTGGGGAACAAACCACGGAA 453
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 345 TGCGAAAGAAGACGGGTCTCTTACTCTTGCAAGCCTTGATTTGGGGAACAAACCTCGTAA 404
Query 454 ATTTGGGAAGGGTAAGGCGATGAAGCTTGAGGGAAGTTTTGTTACTGAAATGGGTCAAGG 513
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 ATTTGGGAAGAGTAAGGCGATGAAGCTTGAGGGAAGTTTTGTTACTGAAATGGGTCAAGG 464
Query 514 TAAGGTAAGAGCGGTAAAGAACGATAAAATGAAAGTTGTCAAGGaaaa-aaaGCCAGCTG 572
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 465 TAAGGTAAAAGCGGTAAAGAACGATAAAATGAAAGTAGTCAAGGAAAAGAAA-CCAGCTG 523
Query 573 AGATAGTGTCTCCTTTGTTTTCTGCAAAATCCTTTGAGGAGCTTGGCCTCCCGGATTCCT 632
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 524 AGATTGTGTCGCCTTTGTTTTCTGCAAAATCCTTTGAGGAGCTTGGCCTCCCAGATTCAT 583
Query 633 TGTTAGACAGTTTGGAAAGAGAAGGTTTCTCTGTCCCAACAGATGTCCAATCAGCAGCTG 692
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 584 TGTTAGACAGCTTGGAAAGAGAAGGTTTCTCTGTTCCAACAGATGTCCAATCCGCAGCTG 643
Query 693 TCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTCTTACACAGGATCTGGCAAAA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTCTTACACAGGATCTGGCAAAA 703
Query 753 CATTAGCTTATCTGCTTCCAATATTGTCCGAAATTGGTCCTCTAGCAGAAAAATCTAGAA 812
| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 704 CCTTAGCTTATCTACTTCCTATATTATCCGAAATTGGTCCTCTAGCAGAAAAATCTAGAA 763
Query 813 GTTCGCACAGTGAAAATGATAAGAGGACTGAGATTCAGGCAATGATCGTGGCTCCATCAA 872
| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 764 GCTCGCACAGTGAAAATGATAAGAGGACAGATATTCAGGCAATGATCGTAGCTCCATCAA 823
Query 873 GAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACTGCTCGGACCTGTTCACCGTA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACTGCTCGGACCTGTTCACCGTA 883
Query 933 GAATGGTTCAGCAGTTGGTAGGAGGTGCAAACCGAATGAGGCAAGAAGAGGCCCTTAAGA 992
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 884 GAATGGTTCAGCAGTTGGTTGGAGGTGCGAACCGAATGAGGCAAGAAGAGGCCCTTAAGA 943
Query 993 AAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAATTGCAGAGATAAGCAAAGGTG 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 944 AAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAATTGCAGAGATAAGCAAAAGTG 1003
Query 1053 GAAAATTGCACACTCATGGGTGTAGATTCTTGGTGCTAGACGAAGTCGATGAGCTTTTAT 1112
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1004 GGAAATTGCACACTCATGGTTGTAGATTCTTGGTGCTAGATGAAGTCGATGAGCTTTTAT 1063
Query 1113 CGTTTAATTTCCGAGAAGATATCCATCGAATACTAGAACATGTAGGAAAGAGATCTGGGG 1172
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1064 CGTTTAATTTCCGAGAAGATATCCATCGAATACTTGAACATGTAGGAAAGAGATCTGGGG 1123
Query 1173 CTGGTCCTAAAGGAGAAGTCGATGAACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAA 1232
||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1124 CTGGTCCTAAAGGGGAAGTGGATGAACGTGCTAACCGGCAGACAATTCTAGTCTCTGCAA 1183
Query 1233 CTGTGCCATTCTCGGTTATCCGAGCAGCTAAAAGCTGGAGTCACGAGCCGGTTCTTGTCC 1292
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1184 CTGTGCCATTCTCTGTTATCCGAGCAGCTAAGAGCTGGAGTCACGAGCCCGTTCTTGTCC 1243
Query 1293 AAGCCAACAAAGTCACTCCTCTTGATACCGTTCAACCATCTGCACCGGTAATGAGCTTGA 1352
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1244 AAGCCAACAAAGTCACGCCTCTTGATACCGTTCAACCATCTGCACCAGTAATAAGCTTAA 1303
Query 1353 CTCCCACAACTTCTGAAGCTGATGGCCAGATTCAGACTACTATTCAGAGCTTACCTCCAG 1412
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1304 CTCCCACAACTTCTGAGGCTAATGGCCAGATTCAGACTACTATTCAGAGCTTACCTCCAG 1363
Query 1413 CTTTAAAACACTATTACTGCATCTCAAAGCATCAACACAAAGTCGACACGTTAAGGAGAT 1472
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1364 CTTTAAAACACTATTACTGCATCTCAAAACATCAACACAAAGTCGACACGTTAAGGAGAT 1423
Query 1473 GCGTTCACGCCCTCGATGCCCAATCGGTTATAGCTTTCATGAACCACTCAAGGCAGCTCA 1532
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 GCGTTCACGCCCTCGACGCCCAATCGGTTATAGCTTTCATGAATCACTCAAGGCAGCTCA 1483
Query 1533 AAGATGTGGTCTACAAACTCGAAGCTCGTGGTATGAATTCAGCTGAGATGCACGGAGATC 1592
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1484 AAGACGTGGTCTACAAACTCGAAGCTCGTGGTATGAATTCAGCGGAGATGCACGGAGATC 1543
Query 1593 TCGGGAAGCTAGGGAGATCAACAGTTCTAAAGAAGTTCAAGAACGGGGAAATCAAGGTAC 1652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1544 TCGGGAAGCTAGGGAGATCAACAGTTCTAAAGAAGTTCAAGAACGGGGAAATCAAGGTGC 1603
Query 1653 TTGTGACAAACGAGCTCTCTGCCCGGGGTCTGGATGTTGCGGAATGTGATCTGGTGGTGA 1712
| ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1604 TCGTGACTAACGAGCTCTCTGCTCGGGGTCTTGATGTTGCAGAATGTGATCTGGTGGTGA 1663
Query 1713 ATCTTGAGCTTCCAACTGATGCGGTTCACTATGCTCATCGAGCTGGGAGAACAGGGAGGC 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ATCTTGAGCTTCCAACTGATGCGGTTCACTATGCTCATCGAGCTGGGAGAACAGGGAGGC 1723
Query 1773 TGGGAAGGAAAGGGACGGTGGTAACAGTGTGCGAGGAATCACAAGTGTTTATAGTGAAGA 1832
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1724 TGGGAAGGAAAGGGACGGTGGTAACAGTGTGTGAGGAATCACAAGTGTTCATAGTGAAGA 1783
Query 1833 AGATGGAGAAGCAGCTTGGTTTGCCTTTCTTGTATTGTGAGTTTGTTGATGGAGAGCTTG 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 AGATGGAGAAGCAGCTTGGTTTGCCTTTCTTGTATTGTGAGTTTGTTGATGGAGAGCTTG 1843
Query 1893 TTGTCACTGAGGAAGATAAAGCTATTATAAGGTGAAAATCTAAAGATGTAATTTTCAGAT 1952
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1844 TTGTCACTGAGGAAGATAAAGCTATTATAAGGTGAAGATCTAAAGATGTAATTTTCAGAT 1903
Query 1953 ACTATTATTACTA-TTGAAAATTCAGAGTCTTGTCCCTTTTTCTTATATATTGTAAACAT 2011
||||||||||||| || ||| |||||||| ||||||||||||| ||||||| |||||||
Sbjct 1904 ACTATTATTACTAATTTAAA-TTCAGAGTTTTGTCCCTTTTTCATATATATCATAAACAT 1962
Query 2012 ATTTTTACCAGACGAAGAACATCTAAAACCAGTGTCG---AATTTACTCCAGTTTTGACC 2068
|||| ||| |||||||||||| || |||||||||| | ||||| ||| ||||||||||
Sbjct 1963 ATTTGTACTAGACGAAGAACAACTTAAACCAGTGTTGTTGAATTTGCTCTAGTTTTGACC 2022
Query 2069 G 2069
|
Sbjct 2023 G 2023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77818370535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5