BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12780.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471431 jgi|Araly1|471431|fgenesh2_kg.1__1385__AT1G12780.1 2287 0.0
Ahg475030 jgi|Araly1|475030|fgenesh2_kg.2__160__AT1G63180.1 1190 0.0
Ahg920122 jgi|Araly1|920122|scaffold_101403.1 809 0.0
Ahg920123 jgi|Araly1|920123|scaffold_101404.1 69.4 7e-11
> Ahg471431 jgi|Araly1|471431|fgenesh2_kg.1__1385__AT1G12780.1
Length=1435
Score = 2287 bits (1238), Expect = 0.0
Identities = 1373/1435 (96%), Gaps = 22/1435 (2%)
Strand=Plus/Plus
Query 1 CCACTCATTTTTCCTATTTTTCGCTTTGCGTGCCTTCTTATCAACTTGTAAACAAAGCTA 60
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCACTCTTTTTTTCTATTTTTCGCTTTGCGTGCCTTCTTATCAACTTGTAAACAAAGCTA 60
Query 61 C-AA-ATATCTTTAAATAAGGACCCAACTCTTTTTCAATTCCTCCCATCAATCTTCTTCA 118
| || ||||| |||||||||||||||||||| ||| || | | ||||||||||||||
Sbjct 61 CAAATATATCAATAAATAAGGACCCAACTCTTCTTC--TT--T-CTATCAATCTTCTTCA 115
Query 119 TTTGTTCTTCTGTTGGTGGTGGTGATCTAGTTTTCAAAGAATCGATTTTGCCAAGTGGGT 178
| |||||||| | |||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct 116 --T-TTCTTCTG-T--TGGTGGTGATTTAG-TTTAAAAGAATCGATTTTGCGAAGTGGGT 168
Query 179 TCTTCTTGAT-AACCTTTCTTCTTCTTTGAAATGGGTTCTTCTGTGGAGCAGAACATTCT 237
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TC-TCTTGATAAATCTTTCTTCTTCTTTGAAATGGGTTCTTCTGTGGAGCAGAACATTCT 227
Query 238 TGTTACTGGTGGTGCTGGCTTTATCGGGACGCATACTGTTGTTCAACTTCTCAAAGATGG 297
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 228 TGTTACTGGTGGTGCTGGATTTATCGGCACGCATACTGTTGTTCAACTTCTGAAAGATGG 287
Query 298 TTTTAAGGTTTCGATCATCGATAATTTTGATAACTCTGTTATCGAAGCTGTTGATAGAGT 357
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 288 TTTTAAGGTTTCGATCATCGATAATCTTGATAACTCTGTTATCGAAGCTGTCGATAGAGT 347
Query 358 TAGGGAGCTTGTTGGTCCTGATCTCTCCAAGAAGCTCGACTTCAATCTGGGTGATCTAAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TAGGGAGCTTGTTGGTCCTGATCTCTCCAAGAAGCTCGACTTCAATCTGGGTGATCTAAG 407
Query 418 AAACAAAGGGGACATTGAGAAACTATTCTCCAAGCAGAGATTTGATGCTGTGATTCATTT 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 408 AAACAAAGGGGACATTGAGAAACTCTTCTCCAAGCAGAGATTTGATGCTGTGATTCATTT 467
Query 478 TGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGAAAACCCTCGCCGCTACTTTGACAATAA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 468 TGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGGAAACCCTCGCCGCTACTTTGACAATAA 527
Query 538 CTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAAGTACAACTGCAAAATGATGGT 597
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 528 CTTGGTTGGAACAATCAATCTGTATGAGACCATGGCAAAGTACAACTGCAAAAGGATGGT 587
Query 598 GTTTTCATCTTCTGCCACTGTTTATGGACAACCTGAAAAGATTCCATGCATGGAAGACTT 657
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 588 GTTTTCATCATCTGCAACTGTTTATGGACAACCTGAAACGATTCCATGCATGGAAGACTT 647
Query 658 TGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAG 707
Query 718 AGATATTCAAAAGGCAGAACCGGAATGGAGAATTATTCTGCTGAGGTACTTCAATCCTGT 777
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 708 AGATATTCAAAGGGCAGAACCGGAATGGAGAATTGTTCTGCTGAGGTACTTCAATCCTGT 767
Query 778 AGGAGCACATGAGAGTGGCAGTATTGGTGAGGATCCAAAAGGCATCCCCAATAACCTCAT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 AGGAGCACATGAGAGTGGCAGTATTGGTGAGGATCCAAAAGGCATCCCCAATAATCTCAT 827
Query 838 GCCTTACATCCAACAAGTGGCCGTTGGACGTTTACCGGAACTCAATGTCTATGGACATGA 897
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 GCCTTACATCCAACAAGTGGCCGTTGGACGTTTACCAGAACTCAATGTCTATGGACATGA 887
Query 898 CTATCCCACCGAGGATGGTAGTGCGGTAAGAGACTACATCCATGTGATGGATTTAGCAGA 957
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 888 CTATCCCACCAAGGATGGTAGTGCGGTAAGAGACTACATCCATGTGATGGATTTAGCGGA 947
Query 958 TGGCCATATCGCTGCGCTCAGGAAGCTATTTGCTGATCCAAAGATTGGTTGTACTGCTTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGGCCATATCGCTGCGCTCAGGAAGCTATTTGCTGATCCAAAGATTGGTTGTACTGCTTA 1007
Query 1018 CAATCTAGGGACTGGTCAAGGAACGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGC 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CAATCTAGGCACTGGTCAAGGAACGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGC 1067
Query 1078 TTCCGGCAAGAAAATCCCGATTAAGCTCTGTCCGAGAAGGTCAGGAGATGCAACAGCAGT 1137
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TTCCGGCAAGAAAATCCCGATCAAGCTCTGTCCGAGAAGGTCAGGAGATGCAACAGCAGT 1127
Query 1138 TTATGCTTCAACAGAGAAGGCTGAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TTATGCTTCAACAGAGAAGGCTGAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGA 1187
Query 1198 TGAGATGTGCAGAGATCAGTGGAAATGGGCAAACAATAATCCATGGGGTTACCAGAATAA 1257
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1188 TGAGATGTGCAGAGATCAGTGGAATTGGGCAAACAACAATCCATGGGGTTACCAGAAGAA 1247
Query 1258 GCTTTGAATTTACTTC-TTTTGTTT-GGAGTTACCATTTCTAATTACTCAAATCTAAAAG 1315
|||||||||||||||| |||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct 1248 GCTTTGAATTTACTTCCTTTTTTTTTGGAGTTGCCATTTCTGATTACTCAAATCTAAAAG 1307
Query 1316 AAAGAAATATACATACATATGATGATATAGTTGTGCTTTATATTCCACATGTATCGAACT 1375
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AAAGAA-T-TA--TACATATGATGATATAGTTGTGCTTTATATTCCACATGTATCGAACT 1363
Query 1376 GATCTCTTACTTCGATGAATAAAATGGAAAGTTGATTTGATTGAATTTTTAGTTT 1430
| |||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1364 GGTCTCTTACTTTGATGAATAAAATGGAAAGTTGATTTTATTGAATTTTCAGTTT 1418
> Ahg475030 jgi|Araly1|475030|fgenesh2_kg.2__160__AT1G63180.1
Length=1422
Score = 1190 bits (644), Expect = 0.0
Identities = 939/1083 (87%), Gaps = 14/1083 (1%)
Strand=Plus/Plus
Query 207 AAATGGGTTCTTCTGTGGAGCAGAACATTCTT-GTTACTGGTGGTGCTGGCTTTATCGGG 265
||||||||||||||||||| ||||||||| || || |||||||||||||| || || ||
Sbjct 215 AAATGGGTTCTTCTGTGGAACAGAACATT-TTGGTGACTGGTGGTGCTGGATTCATTGGA 273
Query 266 ACGCATACTGTTGTTCAACTTCTCAAAGATGGTTTTAAGGTTTCGATCATCGATAATTTT 325
|| |||||||||||||| ||| | || | |||||||||||| ||||||| |||||| ||
Sbjct 274 ACACATACTGTTGTTCAGCTTTTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTT 333
Query 326 GATAACTCTGTTATCGAAGCTGTTGATAGAGTTAGGGAGCTTGTTGGTCCTGATCTCTCC 385
||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 334 GATAACTCTGTCGTTGAAGCTGTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCT 393
Query 386 AAGAAGCTCGACTTCAATCTGGGTGATCTAAGAAACAAAGGGGACATTGAGAAACTATTC 445
| ||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 394 ACCAAGCTTGAATTCAATCTGGGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTT 453
Query 446 TCCAAGCAGAGATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGT 505
|| || ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 454 TCTAATCAGAGATTTGATGCTGTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGT 513
Query 506 GTTGAAAACCCTCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAG 565
|||| ||||||||| || |||||||| |||||||| |||||||| ||||||||||||||
Sbjct 514 GTTGGAAACCCTCGTCGTTACTTTGATAATAACTTAGTTGGAACTATCAATCTATATGAA 573
Query 566 ACCATGGCAAAGTACAACTGCAAAATGATGGTGTTTTCATCTTCTGCCACTGTTTATGGA 625
||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 574 ACCATGGCAAAATACAACTGCAAAATGATGGTGTTTTCGTCGTCTGCAACGGTTTATGGC 633
Query 626 CAACCTGAAA-AGATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATGG 684
|||||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 634 CAACCTGAAATAG-TCCCATGTGTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGG 692
Query 685 TCGTACTAAGCTCTTTCTTGAAGAAATAGCTAGAGATATTCAAAAGGCAGAACCGGAATG 744
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 693 TCGTACTAAGCTGTTTCTTGAAGAGATAGCTAGAGACATTCATGCTGCAGAACCAGAATG 752
Query 745 GA-GAATTATTCTGCTGAGGTACTTCAATCCTGTAGGAGCACATGAGAGTGGCAGTATTG 803
|| || | ||||| ||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 753 GAAGA-TAATTCTTCTGAGGTACTTCAATCCGGTTGGAGCTCATGAGAGTGGAAGAATTG 811
Query 804 GTGAGGATCCAAAAGGCATCCCCAATAACCTCATGCCTTACATCCAACAAGTGGCCGTTG 863
| || |||||||| ||||| || ||||| ||||||||||| ||||||||||| || ||||
Sbjct 812 GAGAAGATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTTGCGGTTG 871
Query 864 GACGTTTACCGGAACTCAATGTCTATGGACATGACTATCCCACCGA-GGATGGTAGTGCG 922
|||| ||||| ||||||||||| ||||||||||||||||| || | |||||| || |||
Sbjct 872 GACGATTACCTGAACTCAATGTATATGGACATGACTATCCTACT-ATGGATGGCAGCGCG 930
Query 923 GTAAGAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAG 982
|| ||||||||||||||||| ||||||||||||||||||||| | ||||| | | |||
Sbjct 931 GTCAGAGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCATTAAACAAG 990
Query 983 CTATTTGCTGA-TCCAAAGATTGGTTGTACTGCTTACAATCTAGGGACTGGTCAAGGAAC 1041
| ||| | || || ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 991 TTGTTTTCAGACTC-AAAGATTGGCTGTACTGCTTATAATCTTGGGACTGGTCAAGGAAC 1049
Query 1042 GTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATTAA 1101
||||| |||||||||||| | ||||||||||||||||| |||||||||||||| || ||
Sbjct 1050 TTCTGTCTTAGAAATGGTTTCTGCTTTTGAAAAAGCTTCTGGCAAGAAAATCCCTATCAA 1109
Query 1102 GCTCTGTCCGAGAAG-GTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCTG 1160
||| ||||| ||||| | | |||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1110 GCTATGTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTGAGAAAGCTG 1168
Query 1161 AGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGA 1220
|||||||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1169 AGAAAGAACTCGGATGGAAGGCAAAGTATGGAGTTGATGAGATGTGCAGAGATCAATGGA 1228
Query 1221 AATGGGCAAACAATAATCCATGGGGTTACCAGAATAAGCTTTGAA-T-TTACTTCTTTTG 1278
| |||||| | || ||||||||||||| |||||| |||| ||||| | || || |||||
Sbjct 1229 ACTGGGCAGATAAGAATCCATGGGGTTTCCAGAAAAAGCCTTGAAATGTTTTTTTTTTTG 1288
Query 1279 TTT 1281
|||
Sbjct 1289 TTT 1291
> Ahg920122 jgi|Araly1|920122|scaffold_101403.1
Length=841
Score = 809 bits (438), Expect = 0.0
Identities = 465/478 (97%), Gaps = 1/478 (0%)
Strand=Plus/Plus
Query 807 AGGATCCAAAAGGCATCCCCAATAACCTCATGCCTTACATCCAACAAGTGGCCGTTGGAC 866
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 364 AGGATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGTTGGAC 423
Query 867 GTTTACCGGAACTCAATGTCTATGGACATGACTATCCCACCGAGGATGGTAGTGCGGTAA 926
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 424 GTTTACTGGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGCGGTAA 483
Query 927 GAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTAT 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GAGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTAT 543
Query 987 TTGCTGATCCAAAGATTGGTTGTACTGCTTACAATCTAGGGACTGGTCAAGGAACGTCTG 1046
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 544 TTGCTGATCCAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAACGTCTG 603
Query 1047 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATTAAGCTCT 1106
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 604 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAAAAAATCCCGATCAAGCTTT 663
Query 1107 GTCCGAGAAGGTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCTGAGAAAG 1166
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 664 GTCCGAGAAGGTCAGGAGATGCAACAGGAGTTTATGCTTCAACAGAGAAGGCTGAGAAAG 723
Query 1167 AACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAAATGGG 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 AACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAATTGGG 783
Query 1227 CAAACAATAATCCATGGGGTTACCAGAATAAGCTTTGAATTTACTTCTTTTGTTTGGA 1284
||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 784 CAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGAATTTACTTCCTTT-TTTGGA 840
Score = 401 bits (217), Expect = 6e-111
Identities = 231/238 (97%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 457 ATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGAAAACCC 516
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 128 ATTTGATACTGCGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGGCAACCC 187
Query 517 TCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAA 247
Query 577 GTACAACTGCAAAATGATGGTGTTTTCATCTTCTGCCACTGTTTATGGACAACCTGAAAA 636
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 248 GTACAACTGCAAAATGATGGTGTTTTCATCATCTGCAACTGTTTATGGACAACCTGAAAA 307
Query 637 GATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAG 694
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 308 GATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTTTGGTCGTACTAAG 365
> Ahg920123 jgi|Araly1|920123|scaffold_101404.1
Length=632
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 1346 TTGTGCTTTATATTCCACATGTATCGAACTGATCTCTTAC 1385
||||||||||||||||||||||||||||||| ||||||||
Sbjct 619 TTGTGCTTTATATTCCACATGTATCGAACTGGTCTCTTAC 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5